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Transcript Overview
Name | MDP0000230993 |
Unique Name | MDP0000230993 |
Type | mRNA |
Organism | Malus x domestica (Apple) |
Sequence length | 3872 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
MDP0000230993 | MDP0000230993 | Malus x domestica | polypeptide |
InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000195 | Rab-GTPase-TBC domain | PFAM | PF00566 | RabGAP-TBC | coord: 146..314 score: 1.3 |
IPR000195 | Rab-GTPase-TBC domain | SMART | SM00164 | Domain in Tre-2, BUB2p, and Cdc16p. Probable | coord: 66..344 score: 2.4 |
IPR000195 | Rab-GTPase-TBC domain | PROFILE | PS50086 | TBC_RABGAP | coord: 69..314 score: 34 |
IPR000195 | Rab-GTPase-TBC domain | SUPERFAMILY | 47923 | Ypt/Rab-GAP domain of gyp1p | coord: 38..274 score: 4.6e-50coord: 249..415 score: 1.8 |
None | No IPR available | GENE3D | 1.10.8.270 | no description | coord: 164..237 score: 1 |
None | No IPR available | PANTHER | PTHR22957 | FAMILY NOT NAMED | coord: 5..417 score: 4.7e |
None | No IPR available | PANTHER | PTHR22957:SF30 | GTPASE ACTIVATING PROTEIN-RELATED | coord: 5..417 score: 4.7e |
None | No IPR available | SEG | seg | seg | coord: 94..109 score |
None | No IPR available | COIL | coil | coiled-coil | coord: 3..8 score: NAcoord: 9..24 score |
None | No IPR available | SEG | seg | seg | coord: 3..17 score |
Sequences
The
following sequences are available for this feature:
mRNA sequence >MDP0000230993 ID=MDP0000230993; Name=MDP0000230993; organism=Malus x domestica; type=mRNA; length=3872bp ATGGCGTTGTTTTTTATGAAGAAAGCTTCAACAGCTGAGTTRGATGCTTT CTATCCTATTAAACCAGAATGCCAAGTTGACATCCCGAAGACGCGCTTTA GGCTCAGGGTATGCCCTTTTCACTTCATTTTGTTGCTAATTTATCTTTTA GCTCTGTCTAACAGAATTGAGTTCAACCACCTTATGGAACAGTTTAATTA TTGCTGCTAAGATAAYTTCCTAGTGTTTTTCCATTGAAAAGATATGGTTA TGCACCACCAATGCTCAATCGCAAGATTCACAACATGATTACTTTMTTGT ACTTGTGAYAAACACGTGTGATTTATGCTTATAAGYATCGCCTTTTGCAG GCGGGGAAAACTCTTAGTGAAAGAAGATGGCATGCTGCCTTCTCTGAAGA TGGTCATTTGGATATAGCTAAAGTGCTTAGACGAATCCAACGAGGGGTAA CCATCYGTTCATTTGTAACTTCTTTTTGAGTTAGGATCTATTGTTGGAGG TGGGGGATTGTTWTATGTTTCTATGTGTGTTTCGTCACTTGTGATATTGA GTTGTGTCCCCAACAAAAGAAAAAAAGTAGAYGTTAAATTCTGCGTGTAG GATATAGCAAACACATCATATATAATTTTTAGCCTTGCTGGTGTTAGATA CACCATATAATGCTCCTTTGGTKCACTCAAATTTCAAATTGTATGTGTAA GATATATAGTATATATCTTCTTACTTCATTTGTTATTCTAGGGTGTCCAT CCTGCAATCAARGGTGTAGTTTGGGAGTTCTTGTTAGGTTGCTTTGATCC AAATAGCACCTTYGATGAACGAAATCAGCTCAGGCAGCGCCGGAGGTAAA ACATTTTTGTTTTTTGCAATCTAATATGTAGAAGAYGGCTCWCAAWTTGA ACATAACCTCATGATKCTGGATCCATGGAAAGATCCTGGTTCTTTAAGTT TTGAATTGCTCTAGAGTAATATATTTTRGTAGCATGGATGGTTACGAGAT GGGGTTGTAYGATTTTTTCCTTCACTTGGTTTTGGGTGTTAGACCTAAGT ATGTGCTGTAGTTTTTTGGTAGATAAAGAGGGGTGCAGGTGAAATGTGAG GTTAGWGAGGCTTGGAAGGGGTAAAGATTTTWTTTCTAGTCTGGCATCAC TAGRTGGTTTTTCATATTCTAGTTTCCCCTTACATTATTTCCCKTAACAA AAAAAAGTCCCAGTGGTATGCTGTCCATCGACCCCATCTTACATTATTTT AATTTAATATGGTGAYTTAATGTATAACATACAATTTTAGGGAGCAGTAT AACAGATTGAAAGCTGAATGCCAGAAGATGGTTCCAGTTATTGGCAGTGG AAAATTTATTACAACGCCAATCATCACRGACGATGGCCAACCAACAGAAG AATCAGAAAATGGCAATATGACAGGGGCTGCAAACCATGCTTCTTCAGAC AAGAAAGTGATTCAGTGGAAGCTTTTYTTGCATCAAATTGGTACATATCT GCTGCATATGTGTTGCAAAACTACAWAATTTGGATAAGTTGTGAACCATA CACGTTTGAGTATCTTATGYTTATTTTACCAAGTGTTCACTTTTAGRTTT TTTCTTTTTCAATACTTTAAGTTCTGAACCTTTATCTATTTTGGTATCTC ATGGTTATTTTAACTTATGTTAACCATTAGAAGTGGTTACTCAACTGGGG GGTTTGGCTTGTAGGTTTGGATGTTGTTCGCACGGATCGAGCACTTGTCT TTTATGAAAGTCAAGCTAATCAGGCAAAACTTTGGGACATTCTTTCAATT TATGCTTGGGTGGACAATGATATTGGTTATGTTCAAGGTGAATGTCTCTG AATCTCAAGTGATATTCTATCAAAGTTGAACAGTATTAAGTGACATTTTA TAATGGGCACTTTTGAGCAGGAATGAATGATATATGCTCGCCAATGGTAA TTCTTATTGAAAATGAAGCAGATGCCTATTGGTGTTTCGAACGTGCTATG CGAAGGCTGGTATGTTTTACTTCTTACCTTGATGGTACTATTATCGGTTG GCTTGTTTTGATAGAGCAGTGTTAACTGCCACTTTTTTACTGTCCATTAT CCATGAACTTGTTATGAGTGATTCCGAACAGGTAGGATAGTGTGACYAGT TTAAACTGAGATCTAGTATTTGACTAGAGCAATTTCGGTTGTCKTATTCT TTSTGTAGTCTGAGTCCTGRCTACTCAAATTGATCATGTRGACTAGAATG GACRGTTGAGAAAGGTGTACCGAGAATGGATGTGAGGGTGTTAARAATTA AGATGGATGATTGGCAGACCTAGAAGGTATTTAGGAAATTGACTCTCTAT AAAACAYTGTAAATGGATTCCTAAAATATAATTAGCRKAAGTTCTCTAGC CAACAGATACATGAATGTTGGCTGTGCTGAATCTGTCAGGCGCTGCACTA GTAAATAAAGGCAACATATTCAGCATTAGGCATCAAAAGTCAGATACAAG TTACAATTAGGCAAGTTTCAATGGTTAWATCAACTCTTWAACTTATAGTC AAGTTAAATGTGGCATACTTRACCTTAAATTATACTGGAAAAGGAGTTCT AACTTTGTTCTGCTGAACTGGATCGGATTCCAACATCTACTAAAGACTCA TCTGGTTTCATCGATGGTGTGTTTAATTCCCTTCTGATAGAGATCATGCA TGACAAGAAACTAAGAAGTGTTAAGTTGTCTTTTGGGGGTCTTGAGGCTG ATTATTTGTCTTGTTCATTTTTATTATTTACYGATGACAAATTTTCTTTA AATGATTTGTTAGATGATTTGTGCTTGTGATATGCTTCTGTTAGGGTATA ATTCAGATTCCTGCTTTTGTTTTGAAAACAGCGAGAAAATTTTAGGTGCA GTGCRAGTTCGATAGGGGTGCAATCTCAGCTGGGTACACTCTCCCAAGTA ATCAAAACYATTGATCCTAAACTTCATCAGCACCTTGGTAATACTTCCTC TGTGCATGTCRACTAACACAGGTCCTTCRTACTTAGCTAAAACTCCATTT CCATCTAATTGACAGAGGATCTAGATGGCGGGGAGTATTTATTTGCTTTT CGCATGCTAATGGTCCTGTTCCGAAGAGAGTTTTCCTTTGTGGATGCACT GTATCTTTGGGAGGTGAGTAGGAAAACTGTACTTTTGCCGTACTGGATTT TTTTTATTATTGAGACATAGATACTTCCAGGATGATGGATGAGATATAGT TTGARTTCACGKTGTCAATTTCTRATGTGAATTCGAACTTTAGGTCTTGT GGATCTCAATGTAATTAATGTATTGAGGGGTATTTTTTTTTTCTTTGCTT TCCTTCATAAGCTTGTTTTAAGWCAGTAATATAGATTGGTTTCAGCTGAT GTGGGCCATGGAATACAACCCAAACATTTTCTCATCRTATGAAGGTCCGA GTGGGGGTGCTACACCACCAAATGTAAATGACAAAGAACTAAAGCAATAT GGCAAGTTCGAGAGAAACATTGTGAAGACGGGATACACAGAACAACATGG TGCACTTTCCGTCTTTCTTGTTGCAAGTGTTCTTGAAACCAAAAATAAGC AACTTTTAAAGGAGGCTAAGGGTCTAGATGATGTTGTCTCGGTCTCTCTC TCTCTCTCTCTCTCTCATGTTCAATGCACATKCATGTTACTKTTTTTGTT CACTGTTAACTAATCTCGTACTGGTCTCCAGATCTTAGGTGGCATAACCG GAAATCTGGATGCTAGAAAGGCATGTAATGAGGCATTGAGAATTCACAAA AAGTACCTGAAGGTATGTGTTCATCTAAAGCAAGGCATAACCAGGGCACT TTGTTTTATTTGGGGATTGTGA back to topprotein sequence of MDP0000230993 >MDP0000230993 ID=MDP0000230993; Name=MDP0000230993; organism=Malus x domestica; type=polypeptide; length=436bp MALFFMKKASTAELDAFYPIKPECQVDIPKTRFRLRAGKTLSERRWHAAF SEDGHLDIAKVLRRIQRGGVHPAIKGVVWEFLLGCFDPNSTFDERNQLRQ RRREQYNRLKAECQKMVPVIGSGKFITTPIITDDGQPTEESENGNMTGAA NHASSDKKVIQWKLFLHQIGLDVVRTDRALVFYESQANQAKLWDILSIYA WVDNDIGYVQGMNDICSPMVILIENEADAYWCFERAMRRLRENFRCSASS IGVQSQLGTLSQVIKTIDPKLHQHLEDLDGGEYLFAFRMLMVLFRREFSF VDALYLWELMWAMEYNPNIFSSYEGPSGGATPPNVNDKELKQYGKFERNI VKTGYTEQHGALSVFLVASVLETKNKQLLKEAKGLDDVVSILGGITGNLD ARKACNEALRIHKKYLKVCVHLKQGITRALCFIWGL back to topmRNA from alignment at chr5:15143259..15147130+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000230993 ID=MDP0000230993; Name=MDP0000230993; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr5:15143259..15147130+ (Malus x domestica
back to topmRNA from alignment at MDC014010.340:38218..42089+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000230993 ID=MDP0000230993; Name=MDP0000230993; organism=Malus x domestica; type=mRNA; length=3872bp; location=Sequence derived from: MDC014010.340:38218..42089+ (Malus x domestica ATGGCGTTGTTTTTTATGAAGAAAGCTTCAACAGCTGAGTTRGATGCTTT
CTATCCTATTAAACCAGAATGCCAAGTTGACATCCCGAAGACGCGCTTTA
GGCTCAGGGTATGCCCTTTTCACTTCATTTTGTTGCTAATTTATCTTTTA
GCTCTGTCTAACAGAATTGAGTTCAACCACCTTATGGAACAGTTTAATTA
TTGCTGCTAAGATAAYTTCCTAGTGTTTTTCCATTGAAAAGATATGGTTA
TGCACCACCAATGCTCAATCGCAAGATTCACAACATGATTACTTTMTTGT
ACTTGTGAYAAACACGTGTGATTTATGCTTATAAGYATCGCCTTTTGCAG
GCGGGGAAAACTCTTAGTGAAAGAAGATGGCATGCTGCCTTCTCTGAAGA
TGGTCATTTGGATATAGCTAAAGTGCTTAGACGAATCCAACGAGGGGTAA
CCATCYGTTCATTTGTAACTTCTTTTTGAGTTAGGATCTATTGTTGGAGG
TGGGGGATTGTTWTATGTTTCTATGTGTGTTTCGTCACTTGTGATATTGA
GTTGTGTCCCCAACAAAAGAAAAAAAGTAGAYGTTAAATTCTGCGTGTAG
GATATAGCAAACACATCATATATAATTTTTAGCCTTGCTGGTGTTAGATA
CACCATATAATGCTCCTTTGGTKCACTCAAATTTCAAATTGTATGTGTAA
GATATATAGTATATATCTTCTTACTTCATTTGTTATTCTAGGGTGTCCAT
CCTGCAATCAARGGTGTAGTTTGGGAGTTCTTGTTAGGTTGCTTTGATCC
AAATAGCACCTTYGATGAACGAAATCAGCTCAGGCAGCGCCGGAGGTAAA
ACATTTTTGTTTTTTGCAATCTAATATGTAGAAGAYGGCTCWCAAWTTGA
ACATAACCTCATGATKCTGGATCCATGGAAAGATCCTGGTTCTTTAAGTT
TTGAATTGCTCTAGAGTAATATATTTTRGTAGCATGGATGGTTACGAGAT
GGGGTTGTAYGATTTTTTCCTTCACTTGGTTTTGGGTGTTAGACCTAAGT
ATGTGCTGTAGTTTTTTGGTAGATAAAGAGGGGTGCAGGTGAAATGTGAG
GTTAGWGAGGCTTGGAAGGGGTAAAGATTTTWTTTCTAGTCTGGCATCAC
TAGRTGGTTTTTCATATTCTAGTTTCCCCTTACATTATTTCCCKTAACAA
AAAAAAGTCCCAGTGGTATGCTGTCCATCGACCCCATCTTACATTATTTT
AATTTAATATGGTGAYTTAATGTATAACATACAATTTTAGGGAGCAGTAT
AACAGATTGAAAGCTGAATGCCAGAAGATGGTTCCAGTTATTGGCAGTGG
AAAATTTATTACAACGCCAATCATCACRGACGATGGCCAACCAACAGAAG
AATCAGAAAATGGCAATATGACAGGGGCTGCAAACCATGCTTCTTCAGAC
AAGAAAGTGATTCAGTGGAAGCTTTTYTTGCATCAAATTGGTACATATCT
GCTGCATATGTGTTGCAAAACTACAWAATTTGGATAAGTTGTGAACCATA
CACGTTTGAGTATCTTATGYTTATTTTACCAAGTGTTCACTTTTAGRTTT
TTTCTTTTTCAATACTTTAAGTTCTGAACCTTTATCTATTTTGGTATCTC
ATGGTTATTTTAACTTATGTTAACCATTAGAAGTGGTTACTCAACTGGGG
GGTTTGGCTTGTAGGTTTGGATGTTGTTCGCACGGATCGAGCACTTGTCT
TTTATGAAAGTCAAGCTAATCAGGCAAAACTTTGGGACATTCTTTCAATT
TATGCTTGGGTGGACAATGATATTGGTTATGTTCAAGGTGAATGTCTCTG
AATCTCAAGTGATATTCTATCAAAGTTGAACAGTATTAAGTGACATTTTA
TAATGGGCACTTTTGAGCAGGAATGAATGATATATGCTCGCCAATGGTAA
TTCTTATTGAAAATGAAGCAGATGCCTATTGGTGTTTCGAACGTGCTATG
CGAAGGCTGGTATGTTTTACTTCTTACCTTGATGGTACTATTATCGGTTG
GCTTGTTTTGATAGAGCAGTGTTAACTGCCACTTTTTTACTGTCCATTAT
CCATGAACTTGTTATGAGTGATTCCGAACAGGTAGGATAGTGTGACYAGT
TTAAACTGAGATCTAGTATTTGACTAGAGCAATTTCGGTTGTCKTATTCT
TTSTGTAGTCTGAGTCCTGRCTACTCAAATTGATCATGTRGACTAGAATG
GACRGTTGAGAAAGGTGTACCGAGAATGGATGTGAGGGTGTTAARAATTA
AGATGGATGATTGGCAGACCTAGAAGGTATTTAGGAAATTGACTCTCTAT
AAAACAYTGTAAATGGATTCCTAAAATATAATTAGCRKAAGTTCTCTAGC
CAACAGATACATGAATGTTGGCTGTGCTGAATCTGTCAGGCGCTGCACTA
GTAAATAAAGGCAACATATTCAGCATTAGGCATCAAAAGTCAGATACAAG
TTACAATTAGGCAAGTTTCAATGGTTAWATCAACTCTTWAACTTATAGTC
AAGTTAAATGTGGCATACTTRACCTTAAATTATACTGGAAAAGGAGTTCT
AACTTTGTTCTGCTGAACTGGATCGGATTCCAACATCTACTAAAGACTCA
TCTGGTTTCATCGATGGTGTGTTTAATTCCCTTCTGATAGAGATCATGCA
TGACAAGAAACTAAGAAGTGTTAAGTTGTCTTTTGGGGGTCTTGAGGCTG
ATTATTTGTCTTGTTCATTTTTATTATTTACYGATGACAAATTTTCTTTA
AATGATTTGTTAGATGATTTGTGCTTGTGATATGCTTCTGTTAGGGTATA
ATTCAGATTCCTGCTTTTGTTTTGAAAACAGCGAGAAAATTTTAGGTGCA
GTGCRAGTTCGATAGGGGTGCAATCTCAGCTGGGTACACTCTCCCAAGTA
ATCAAAACYATTGATCCTAAACTTCATCAGCACCTTGGTAATACTTCCTC
TGTGCATGTCRACTAACACAGGTCCTTCRTACTTAGCTAAAACTCCATTT
CCATCTAATTGACAGAGGATCTAGATGGCGGGGAGTATTTATTTGCTTTT
CGCATGCTAATGGTCCTGTTCCGAAGAGAGTTTTCCTTTGTGGATGCACT
GTATCTTTGGGAGGTGAGTAGGAAAACTGTACTTTTGCCGTACTGGATTT
TTTTTATTATTGAGACATAGATACTTCCAGGATGATGGATGAGATATAGT
TTGARTTCACGKTGTCAATTTCTRATGTGAATTCGAACTTTAGGTCTTGT
GGATCTCAATGTAATTAATGTATTGAGGGGTATTTTTTTTTTCTTTGCTT
TCCTTCATAAGCTTGTTTTAAGWCAGTAATATAGATTGGTTTCAGCTGAT
GTGGGCCATGGAATACAACCCAAACATTTTCTCATCRTATGAAGGTCCGA
GTGGGGGTGCTACACCACCAAATGTAAATGACAAAGAACTAAAGCAATAT
GGCAAGTTCGAGAGAAACATTGTGAAGACGGGATACACAGAACAACATGG
TGCACTTTCCGTCTTTCTTGTTGCAAGTGTTCTTGAAACCAAAAATAAGC
AACTTTTAAAGGAGGCTAAGGGTCTAGATGATGTTGTCTCGGTCTCTCTC
TCTCTCTCTCTCTCTCATGTTCAATGCACATKCATGTTACTKTTTTTGTT
CACTGTTAACTAATCTCGTACTGGTCTCCAGATCTTAGGTGGCATAACCG
GAAATCTGGATGCTAGAAAGGCATGTAATGAGGCATTGAGAATTCACAAA
AAGTACCTGAAGGTATGTGTTCATCTAAAGCAAGGCATAACCAGGGCACT
TTGTTTTATTTGGGGATTGTGA back to topCoding sequence (CDS) from alignment at MDC014010.340:38218..42089+ >MDP0000230993 ID=MDP0000230993; Name=MDP0000230993; organism=Malus x domestica; type=CDS; length=1311bp; location=Sequence derived from: MDC014010.340:38218..42089+ (Malus x domestica ATGGCGTTGTTTTTTATGAAGAAAGCTTCAACAGCTGAGTTRGATGCTTT CTATCCTATTAAACCAGAATGCCAAGTTGACATCCCGAAGACGCGCTTTA GGCTCAGGGCGGGGAAAACTCTTAGTGAAAGAAGATGGCATGCTGCCTTC TCTGAAGATGGTCATTTGGATATAGCTAAAGTGCTTAGACGAATCCAACG AGGGGGTGTCCATCCTGCAATCAARGGTGTAGTTTGGGAGTTCTTGTTAG GTTGCTTTGATCCAAATAGCACCTTYGATGAACGAAATCAGCTCAGGCAG CGCCGGAGGGAGCAGTATAACAGATTGAAAGCTGAATGCCAGAAGATGGT TCCAGTTATTGGCAGTGGAAAATTTATTACAACGCCAATCATCACRGACG ATGGCCAACCAACAGAAGAATCAGAAAATGGCAATATGACAGGGGCTGCA AACCATGCTTCTTCAGACAAGAAAGTGATTCAGTGGAAGCTTTTYTTGCA TCAAATTGGTTTGGATGTTGTTCGCACGGATCGAGCACTTGTCTTTTATG AAAGTCAAGCTAATCAGGCAAAACTTTGGGACATTCTTTCAATTTATGCT TGGGTGGACAATGATATTGGTTATGTTCAAGGAATGAATGATATATGCTC GCCAATGGTAATTCTTATTGAAAATGAAGCAGATGCCTATTGGTGTTTCG AACGTGCTATGCGAAGGCTGCGAGAAAATTTTAGGTGCAGTGCRAGTTCG ATAGGGGTGCAATCTCAGCTGGGTACACTCTCCCAAGTAATCAAAACYAT TGATCCTAAACTTCATCAGCACCTTGAGGATCTAGATGGCGGGGAGTATT TATTTGCTTTTCGCATGCTAATGGTCCTGTTCCGAAGAGAGTTTTCCTTT GTGGATGCACTGTATCTTTGGGAGCTGATGTGGGCCATGGAATACAACCC AAACATTTTCTCATCRTATGAAGGTCCGAGTGGGGGTGCTACACCACCAA ATGTAAATGACAAAGAACTAAAGCAATATGGCAAGTTCGAGAGAAACATT GTGAAGACGGGATACACAGAACAACATGGTGCACTTTCCGTCTTTCTTGT TGCAAGTGTTCTTGAAACCAAAAATAAGCAACTTTTAAAGGAGGCTAAGG GTCTAGATGATGTTGTCTCGATCTTAGGTGGCATAACCGGAAATCTGGAT GCTAGAAAGGCATGTAATGAGGCATTGAGAATTCACAAAAAGTACCTGAA GGTATGTGTTCATCTAAAGCAAGGCATAACCAGGGCACTTTGTTTTATTT GGGGATTGTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR000195 | Rab-GAP-TBC_dom |
Vocabulary: Molecular Function
Term | Definition |
GO:0005097 | Rab GTPase activator activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0005622 | intracellular anatomical structure |
Vocabulary: Biological Process
Term | Definition |
GO:0032313 | regulation of Rab GTPase activity |
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