MDP0000238640, MDP0000238640 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000238640
Unique Name	MDP0000238640
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1689

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr4	chromosome	chr4:6860178..6861866 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC007239.496	contig	MDC007239.496:20719..22407 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000238640_exon_1	MDP0000238640_exon_1	Malus x domestica	CDS
MDP0000238640_exon_2	MDP0000238640_exon_2	Malus x domestica	CDS
MDP0000238640_exon_3	MDP0000238640_exon_3	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000238640	MDP0000238640	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 32..407 score: 1.1e
None	No IPR available	SEG	seg	seg	coord: 433..455 score
None	No IPR available	SEG	seg	seg	coord: 31..43 score
None	No IPR available	SEG	seg	seg	coord: 40..54 score
None	No IPR available	SEG	seg	seg	coord: 19..47 score
None	No IPR available	SEG	seg	seg	coord: 9..15 score
None	No IPR available	SEG	seg	seg	coord: 4..16 score
None	No IPR available	SEG	seg	seg	coord: 25..36 score
None	No IPR available	SEG	seg	seg	coord: 43..54 score
None	No IPR available	SEG	seg	seg	coord: 21..33 score: NAcoord: 39..52 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:6860178..6861866-
mRNA from alignment at MDC007239.496:20719..22407-
coding sequence from alignment at MDC007239.496:20719..22407-

mRNA sequence

>MDP0000238640 ID=MDP0000238640; Name=MDP0000238640; organism=Malus x domestica; type=mRNA; length=1689bp
ATGGCAGACACGAAATGGATTATTCAAGTTAACGAAGAGCTCGATAAGAT
GCAGGATCTTTCGATAGAGAAGGAGCATTGGAGCAAGGGGTCGATATACA
GACTGCCAACCTGCATCACGGACATTAACAAGAAGGCCTACAAGCCCCAG
GTGGTCTCCTTCGGGCCTTACCATTTCAATAATTTTAAATCCAAATGAGG
ACCACAAGCGCAATAATTTAAATCCAATGGAGGAGCACAAGCGCCGCGCC
CTTGTCCATTTCCTGAAAAGATGTGGGAAACCTGTTGAGCTGTTCGTCAA
CGCGCTGGCTGAAGTGGTGCAGGATTTGAAGGACTCGTACAATCCGCTTG
AGCCTGAGTGGAGAGATGATACAGATAGATTCTTGCAGCTGATGATTCTG
GATGGCTGTTTCATGCTGGAAGTCTTGCGGGTTGCTTCTCATTTACTGGA
TGATTACGCTCCCAATGATCCCGTCTTCAGCAACCACGGGAAGCTCCATA
CGATGCCGTACATCAAGCGCGACATGTTGATGCTTGAGAATCAGTTGCCA
ATCCTGGTTCTTGACAAGCTGGTTGCGGTTGAGAGCGATTACGCTAAGGT
ATTAATGTAGAGAGTGTCAATCTCAAGTCAGGAAATTAAATTGTTGCATA
ATAATTAAATAAAATCTCATGTGGATGCTCATGTGGGATGCTCATGTTCT
AACAACATAACACATAAGATTCTGTATCCCATGTGGGATGCTCATGTTCT
AACACATAGTCCTCTGTATCCTATGTTGATGTTTTTCGTTGCACAATAAT
CTCTATTTGTTTCTGGCAGGATGAAGGGTTTGTCATCAAGCTCCTAATCA
AGTTCTTCTCCCCCGGTACAGCAGCCTCAATTACGGGAAAATGCGTGCAC
GCATTGGATGTGTATAGGAAGAGCCAGCTTCTGGGAGAGCCCTATTGCAA
AACAGGTCACTGCAGACCAGAGACTGTGAATCGTCATGAGGAAATCATCT
GGTCAGCGACAGAGCTTAATGAAGCCGGGATCAGATTCAAGGAAAGCAAA
ACCACTAGCCTCAAAGACATCTCATTCTCCAGGGGAATCCTCAGGCTCCC
ATCCATCATTGTGGATGACACCACCGAATCCATGTTCTTGAATCTGATAG
CGTTTGAGCGCTTCCATGTTGGGGCAGGCAACGAGGTCACATCCTATATA
TTTTTCATGGACAATATCATAGACAATGCCAGAGATGTTGCCCTCCTACA
CTCAAAAGGTATCATCCATAATGCCCTGGGAAGCGACAAGGCAGTTGCGG
ATCTTTTCAACTCGCTCTCTAAGGACATAACGCTTGATCCAGAAAGCAGC
CTTGATGCGGTGCATAAGAATGTGTATCACTACTGCAAGAAGCCTTGGAA
CGTCTGGCGCGCCAATCTCATGCACACTTATTTCAGAAATCCATGGGCTA
TTATTTCCCTCGTTGCCGGTGTCTTCCTCTTCGTGCTCACTATAGTTCAG
ACCGGATACTCCATATATCCCTACTACTTTCCAAATGGTGATTCTCCCAC
CTGTGCATGTTCTGTTAACAATTCTACTAGCCCTGCGCCTCCTCCTCCGC
CTCCACCAAACGCTGCATACTCCACCTCACCATCAAGATTTATATTTTCT
TTCGTTCTTATGTCGGTTGTATGGATGCTTACGGGTTGA

protein sequence of MDP0000238640

>MDP0000238640 ID=MDP0000238640; Name=MDP0000238640; organism=Malus x domestica; type=polypeptide; length=472bp
MADTKWIIQVNEELDKMQDLSIEKEHWSKGSIYRLPTCITDINKKAYKPQ
DHKRNNLNPMEEHKRRALVHFLKRCGKPVELFVNALAEVVQDLKDSYNPL
EPEWRDDTDRFLQLMILDGCFMLEVLRVASHLLDDYAPNDPVFSNHGKLH
TMPYIKRDMLMLENQLPILVLDKLVAVESDYAKDEGFVIKLLIKFFSPGT
AASITGKCVHALDVYRKSQLLGEPYCKTGHCRPETVNRHEEIIWSATELN
EAGIRFKESKTTSLKDISFSRGILRLPSIIVDDTTESMFLNLIAFERFHV
GAGNEVTSYIFFMDNIIDNARDVALLHSKGIIHNALGSDKAVADLFNSLS
KDITLDPESSLDAVHKNVYHYCKKPWNVWRANLMHTYFRNPWAIISLVAG
VFLFVLTIVQTGYSIYPYYFPNGDSPTCACSVNNSTSPAPPPPPPPNAAY
STSPSRFIFSFVLMSVVWMLTG

mRNA from alignment at chr4:6860178..6861866-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000238640 ID=MDP0000238640; Name=MDP0000238640; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr4:6860178..6861866- (Malus x domestica

mRNA from alignment at MDC007239.496:20719..22407-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000238640 ID=MDP0000238640; Name=MDP0000238640; organism=Malus x domestica; type=mRNA; length=1689bp; location=Sequence derived from: MDC007239.496:20719..22407- (Malus x domestica
ATGGCAGACACGAAATGGATTATTCAAGTTAACGAAGAGCTCGATAAGAT
GCAGGATCTTTCGATAGAGAAGGAGCATTGGAGCAAGGGGTCGATATACA
GACTGCCAACCTGCATCACGGACATTAACAAGAAGGCCTACAAGCCCCAG
GTGGTCTCCTTCGGGCCTTACCATTTCAATAATTTTAAATCCAAATGAGG
ACCACAAGCGCAATAATTTAAATCCAATGGAGGAGCACAAGCGCCGCGCC
CTTGTCCATTTCCTGAAAAGATGTGGGAAACCTGTTGAGCTGTTCGTCAA
CGCGCTGGCTGAAGTGGTGCAGGATTTGAAGGACTCGTACAATCCGCTTG
AGCCTGAGTGGAGAGATGATACAGATAGATTCTTGCAGCTGATGATTCTG
GATGGCTGTTTCATGCTGGAAGTCTTGCGGGTTGCTTCTCATTTACTGGA
TGATTACGCTCCCAATGATCCCGTCTTCAGCAACCACGGGAAGCTCCATA
CGATGCCGTACATCAAGCGCGACATGTTGATGCTTGAGAATCAGTTGCCA
ATCCTGGTTCTTGACAAGCTGGTTGCGGTTGAGAGCGATTACGCTAAGGT
ATTAATGTAGAGAGTGTCAATCTCAAGTCAGGAAATTAAATTGTTGCATA
ATAATTAAATAAAATCTCATGTGGATGCTCATGTGGGATGCTCATGTTCT
AACAACATAACACATAAGATTCTGTATCCCATGTGGGATGCTCATGTTCT
AACACATAGTCCTCTGTATCCTATGTTGATGTTTTTCGTTGCACAATAAT
CTCTATTTGTTTCTGGCAGGATGAAGGGTTTGTCATCAAGCTCCTAATCA
AGTTCTTCTCCCCCGGTACAGCAGCCTCAATTACGGGAAAATGCGTGCAC
GCATTGGATGTGTATAGGAAGAGCCAGCTTCTGGGAGAGCCCTATTGCAA
AACAGGTCACTGCAGACCAGAGACTGTGAATCGTCATGAGGAAATCATCT
GGTCAGCGACAGAGCTTAATGAAGCCGGGATCAGATTCAAGGAAAGCAAA
ACCACTAGCCTCAAAGACATCTCATTCTCCAGGGGAATCCTCAGGCTCCC
ATCCATCATTGTGGATGACACCACCGAATCCATGTTCTTGAATCTGATAG
CGTTTGAGCGCTTCCATGTTGGGGCAGGCAACGAGGTCACATCCTATATA
TTTTTCATGGACAATATCATAGACAATGCCAGAGATGTTGCCCTCCTACA
CTCAAAAGGTATCATCCATAATGCCCTGGGAAGCGACAAGGCAGTTGCGG
ATCTTTTCAACTCGCTCTCTAAGGACATAACGCTTGATCCAGAAAGCAGC
CTTGATGCGGTGCATAAGAATGTGTATCACTACTGCAAGAAGCCTTGGAA
CGTCTGGCGCGCCAATCTCATGCACACTTATTTCAGAAATCCATGGGCTA
TTATTTCCCTCGTTGCCGGTGTCTTCCTCTTCGTGCTCACTATAGTTCAG
ACCGGATACTCCATATATCCCTACTACTTTCCAAATGGTGATTCTCCCAC
CTGTGCATGTTCTGTTAACAATTCTACTAGCCCTGCGCCTCCTCCTCCGC
CTCCACCAAACGCTGCATACTCCACCTCACCATCAAGATTTATATTTTCT
TTCGTTCTTATGTCGGTTGTATGGATGCTTACGGGTTGA

Coding sequence (CDS) from alignment at MDC007239.496:20719..22407-

>MDP0000238640 ID=MDP0000238640; Name=MDP0000238640; organism=Malus x domestica; type=CDS; length=1419bp; location=Sequence derived from: MDC007239.496:20719..22407- (Malus x domestica
ATGGCAGACACGAAATGGATTATTCAAGTTAACGAAGAGCTCGATAAGAT
GCAGGATCTTTCGATAGAGAAGGAGCATTGGAGCAAGGGGTCGATATACA
GACTGCCAACCTGCATCACGGACATTAACAAGAAGGCCTACAAGCCCCAG
GACCACAAGCGCAATAATTTAAATCCAATGGAGGAGCACAAGCGCCGCGC
CCTTGTCCATTTCCTGAAAAGATGTGGGAAACCTGTTGAGCTGTTCGTCA
ACGCGCTGGCTGAAGTGGTGCAGGATTTGAAGGACTCGTACAATCCGCTT
GAGCCTGAGTGGAGAGATGATACAGATAGATTCTTGCAGCTGATGATTCT
GGATGGCTGTTTCATGCTGGAAGTCTTGCGGGTTGCTTCTCATTTACTGG
ATGATTACGCTCCCAATGATCCCGTCTTCAGCAACCACGGGAAGCTCCAT
ACGATGCCGTACATCAAGCGCGACATGTTGATGCTTGAGAATCAGTTGCC
AATCCTGGTTCTTGACAAGCTGGTTGCGGTTGAGAGCGATTACGCTAAGG
ATGAAGGGTTTGTCATCAAGCTCCTAATCAAGTTCTTCTCCCCCGGTACA
GCAGCCTCAATTACGGGAAAATGCGTGCACGCATTGGATGTGTATAGGAA
GAGCCAGCTTCTGGGAGAGCCCTATTGCAAAACAGGTCACTGCAGACCAG
AGACTGTGAATCGTCATGAGGAAATCATCTGGTCAGCGACAGAGCTTAAT
GAAGCCGGGATCAGATTCAAGGAAAGCAAAACCACTAGCCTCAAAGACAT
CTCATTCTCCAGGGGAATCCTCAGGCTCCCATCCATCATTGTGGATGACA
CCACCGAATCCATGTTCTTGAATCTGATAGCGTTTGAGCGCTTCCATGTT
GGGGCAGGCAACGAGGTCACATCCTATATATTTTTCATGGACAATATCAT
AGACAATGCCAGAGATGTTGCCCTCCTACACTCAAAAGGTATCATCCATA
ATGCCCTGGGAAGCGACAAGGCAGTTGCGGATCTTTTCAACTCGCTCTCT
AAGGACATAACGCTTGATCCAGAAAGCAGCCTTGATGCGGTGCATAAGAA
TGTGTATCACTACTGCAAGAAGCCTTGGAACGTCTGGCGCGCCAATCTCA
TGCACACTTATTTCAGAAATCCATGGGCTATTATTTCCCTCGTTGCCGGT
GTCTTCCTCTTCGTGCTCACTATAGTTCAGACCGGATACTCCATATATCC
CTACTACTTTCCAAATGGTGATTCTCCCACCTGTGCATGTTCTGTTAACA
ATTCTACTAGCCCTGCGCCTCCTCCTCCGCCTCCACCAAACGCTGCATAC
TCCACCTCACCATCAAGATTTATATTTTCTTTCGTTCTTATGTCGGTTGT
ATGGATGCTTACGGGTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln