MDP0000244108, MDP0000244108 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000244108
Unique NameMDP0000244108
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1706
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000244108_exon_1MDP0000244108_exon_1Malus x domesticaCDS
MDP0000244108_exon_2MDP0000244108_exon_2Malus x domesticaCDS
MDP0000244108_exon_3MDP0000244108_exon_3Malus x domesticaCDS
MDP0000244108_exon_4MDP0000244108_exon_4Malus x domesticaCDS
MDP0000244108_exon_5MDP0000244108_exon_5Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000244108MDP0000244108Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001087Lipase, GDSLPFAMPF00657Lipase_GDSLcoord: 41..334
score: 1
NoneNo IPR availablePANTHERPTHR22835FAMILY NOT NAMEDcoord: 36..352
score: 5.4
NoneNo IPR availablePANTHERPTHR22835:SF39LATERAL SIGNALING TARGET PROTEIN 2coord: 36..352
score: 5.4
NoneNo IPR availableSEGsegsegcoord: 6..25
score
NoneNo IPR availableSEGsegsegcoord: 16..31
score
NoneNo IPR availableSEGsegsegcoord: 18..28
score
NoneNo IPR availableSEGsegsegcoord: 25..31
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000244108 ID=MDP0000244108; Name=MDP0000244108; organism=Malus x domestica; type=mRNA; length=1706bp
ATGGATTTTCYCAGGCTACTTTGTGCAGCTGTGCTTCTWGTTTTGGGGTT
GCTGCTGGGMGGACAGAAGGCGGTGAATGGTGGYGCTGATGGCGGTTCCG
GGAGTTGTCGCTTTCCAGCCATWTACAACTTTGGGGACTCAAACTCTGAC
ACTGGGGCTATCTCAGCTGCCATATCCGAAGTTCCTCCTCCTAATGGTGA
AACCTTCTTTGGAAAACCTTCCGGGCGCTTGTCTGATGGCCGTCTTATAA
TCGACTTTWTCGGTAATTAAGGGTCTCTTTGATTAACCATTTCGTTTTTA
GTTTCTAATTATTWTTTTTTTTGGTCGAATAATGTTTATAWGTTTCTAAA
CTTTGTGCAGCTGAGAAGTTGCAGATACCATATCTTAGTCCATACCTGGA
CTCACTTGGGACTAATTTCCTGCATGGTGCGAATTTTGCAACCGGTGGTT
CATCGRTTAGGCCGGGCGGTTATAGTCCGTTTCATCTTGGCATTCAAATT
TCCCAGTTCATAAGATTCAAGTCTCACAGCATTGCTCTCTATAAACAACT
TCATTCAACCAGTCAGTCTTCTCTCCTAAACCTCTATTATTTCGGACACA
TTTGGTCTTTATGATTGGACCGGATTGGATAATTCACTAGATTTAAGGTA
TGTTCGGTAAGCAATGACGGCCAATTCCTTGTTCTGTCCGAATTGAAGGA
ATTAATGGATCGGTTATAAGKTGTTTTGACGTTTGTTTCTTCCTWCGATA
TATCTTGAATCTAGCAAGTTATCCAGTTCAGTTCAATCTCACACATCAAA
TGTATGCTACCTAAATGTTCTATGCTACGAGATAAAACTCATGCGCTTGG
AAACGGRAATTTTGGCACCAGGAAGACTACCTAGGCCGGAGGACTTCCCG
AAGGCTCTCTACACTTTCGATATTGGTCAGAATGATCTGGCCTACGGCAT
CCAACACGGGACGATASAAGAAGTTAGAGCCTCCATTCCTGCCATCCTGA
GCCAGTTATCGCAAGCAATATCCGTAGGTGCACTAAAACAGCGTTTACTT
TGGACGTGACCAAAACATTGAGATATACTAATTCAATGTGCCACATTTTT
CAGCAACTATACAAGGAAGGAGCTAGGTTTTTCTGGGTGCATAACACAGG
CCCTCAAGGATGCTTGCCCTATAGCGTTATTTACSACAAATCGAAGCCTG
GTAATCTGGACAAGAGCGGCTGCGTGAAGCCTCTCAATGCGGTGGCTCAG
GAGTTCAACCGGCAGCTTAAGAACAGCATAATGCTGTTGAGATCACTGCT
CCCTCTTGCAGCATTCACGTACGTCGATGTGTACTCAGCTAAATACACTC
TCATTTCTGATGCTAAAAAACAAGGTAACTTCAAAAACCATTTATAACAT
GTGCATAGCCTCGTATGAACGTATGGTAATGTGATAGAAATTCGTGATTC
ACCAGGTTTTGTTGATCCTTTCGACTTTTGCTGCGGCAGTTACTACGGAT
TCCACATTGATTGCGGAAGGAAAGCCGTGGTGAATGGAACTGTGTATGGC
AATCCTTGCAGCAGTCCGACAACGCATATCAGTTGGGATGGGATACACTA
CTCCCAGGCCGCCAATGCACTGATTGCCAGTCGCATTCTCAACGGCTCAC
TCTCTGACCCCCCGGTTTCAATCACGCACGCTTGTCAYAGTTCCAAGAAT
ACATGA
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protein sequence of MDP0000244108

>MDP0000244108 ID=MDP0000244108; Name=MDP0000244108; organism=Malus x domestica; type=polypeptide; length=356bp
MDFXRLLCAAVLLVLGLLLGGQKAVNGGADGGSGSCRFPAXYNFGDSNSD
TGAISAAISEVPPPNGETFFGKPSGRLSDGRLIIDFXAEKLQIPYLSPYL
DSLGTNFLHGANFATGGSSIKLMRLETXILAPGRLPRPEDFPKALYTFDI
GQNDLAYGIQHGTIXEVRASIPAILSQLSQAISQLYKEGARFFWVHNTGP
QGCLPYSVIYXKSKPGNLDKSGCVKPLNAVAQEFNRQLKNSIMLLRSLLP
LAAFTYVDVYSAKYTLISDAKKQGFVDPFDFCCGSYYGFHIDCGRKAVVN
GTVYGNPCSSPTTHISWDGIHYSQAANALIASRILNGSLSDPPVSITHAC
HSSKNT
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mRNA from alignment at chr9:1864353..1866058-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000244108 ID=MDP0000244108; Name=MDP0000244108; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr9:1864353..1866058- (Malus x domestica
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mRNA from alignment at MDC018348.99:7833..9538-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000244108 ID=MDP0000244108; Name=MDP0000244108; organism=Malus x domestica; type=mRNA; length=1706bp; location=Sequence derived from: MDC018348.99:7833..9538- (Malus x domestica
ATGGATTTTCYCAGGCTACTTTGTGCAGCTGTGCTTCTWGTTTTGGGGTT
GCTGCTGGGMGGACAGAAGGCGGTGAATGGTGGYGCTGATGGCGGTTCCG
GGAGTTGTCGCTTTCCAGCCATWTACAACTTTGGGGACTCAAACTCTGAC
ACTGGGGCTATCTCAGCTGCCATATCCGAAGTTCCTCCTCCTAATGGTGA
AACCTTCTTTGGAAAACCTTCCGGGCGCTTGTCTGATGGCCGTCTTATAA
TCGACTTTWTCGGTAATTAAGGGTCTCTTTGATTAACCATTTCGTTTTTA
GTTTCTAATTATTWTTTTTTTTGGTCGAATAATGTTTATAWGTTTCTAAA
CTTTGTGCAGCTGAGAAGTTGCAGATACCATATCTTAGTCCATACCTGGA
CTCACTTGGGACTAATTTCCTGCATGGTGCGAATTTTGCAACCGGTGGTT
CATCGRTTAGGCCGGGCGGTTATAGTCCGTTTCATCTTGGCATTCAAATT
TCCCAGTTCATAAGATTCAAGTCTCACAGCATTGCTCTCTATAAACAACT
TCATTCAACCAGTCAGTCTTCTCTCCTAAACCTCTATTATTTCGGACACA
TTTGGTCTTTATGATTGGACCGGATTGGATAATTCACTAGATTTAAGGTA
TGTTCGGTAAGCAATGACGGCCAATTCCTTGTTCTGTCCGAATTGAAGGA
ATTAATGGATCGGTTATAAGKTGTTTTGACGTTTGTTTCTTCCTWCGATA
TATCTTGAATCTAGCAAGTTATCCAGTTCAGTTCAATCTCACACATCAAA
TGTATGCTACCTAAATGTTCTATGCTACGAGATAAAACTCATGCGCTTGG
AAACGGRAATTTTGGCACCAGGAAGACTACCTAGGCCGGAGGACTTCCCG
AAGGCTCTCTACACTTTCGATATTGGTCAGAATGATCTGGCCTACGGCAT
CCAACACGGGACGATASAAGAAGTTAGAGCCTCCATTCCTGCCATCCTGA
GCCAGTTATCGCAAGCAATATCCGTAGGTGCACTAAAACAGCGTTTACTT
TGGACGTGACCAAAACATTGAGATATACTAATTCAATGTGCCACATTTTT
CAGCAACTATACAAGGAAGGAGCTAGGTTTTTCTGGGTGCATAACACAGG
CCCTCAAGGATGCTTGCCCTATAGCGTTATTTACSACAAATCGAAGCCTG
GTAATCTGGACAAGAGCGGCTGCGTGAAGCCTCTCAATGCGGTGGCTCAG
GAGTTCAACCGGCAGCTTAAGAACAGCATAATGCTGTTGAGATCACTGCT
CCCTCTTGCAGCATTCACGTACGTCGATGTGTACTCAGCTAAATACACTC
TCATTTCTGATGCTAAAAAACAAGGTAACTTCAAAAACCATTTATAACAT
GTGCATAGCCTCGTATGAACGTATGGTAATGTGATAGAAATTCGTGATTC
ACCAGGTTTTGTTGATCCTTTCGACTTTTGCTGCGGCAGTTACTACGGAT
TCCACATTGATTGCGGAAGGAAAGCCGTGGTGAATGGAACTGTGTATGGC
AATCCTTGCAGCAGTCCGACAACGCATATCAGTTGGGATGGGATACACTA
CTCCCAGGCCGCCAATGCACTGATTGCCAGTCGCATTCTCAACGGCTCAC
TCTCTGACCCCCCGGTTTCAATCACGCACGCTTGTCAYAGTTCCAAGAAT
ACATGA
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Coding sequence (CDS) from alignment at MDC018348.99:7833..9538-

>MDP0000244108 ID=MDP0000244108; Name=MDP0000244108; organism=Malus x domestica; type=CDS; length=1071bp; location=Sequence derived from: MDC018348.99:7833..9538- (Malus x domestica
ATGGATTTTCYCAGGCTACTTTGTGCAGCTGTGCTTCTWGTTTTGGGGTT
GCTGCTGGGMGGACAGAAGGCGGTGAATGGTGGYGCTGATGGCGGTTCCG
GGAGTTGTCGCTTTCCAGCCATWTACAACTTTGGGGACTCAAACTCTGAC
ACTGGGGCTATCTCAGCTGCCATATCCGAAGTTCCTCCTCCTAATGGTGA
AACCTTCTTTGGAAAACCTTCCGGGCGCTTGTCTGATGGCCGTCTTATAA
TCGACTTTWTCGCTGAGAAGTTGCAGATACCATATCTTAGTCCATACCTG
GACTCACTTGGGACTAATTTCCTGCATGGTGCGAATTTTGCAACCGGTGG
TTCATCGATAAAACTCATGCGCTTGGAAACGGRAATTTTGGCACCAGGAA
GACTACCTAGGCCGGAGGACTTCCCGAAGGCTCTCTACACTTTCGATATT
GGTCAGAATGATCTGGCCTACGGCATCCAACACGGGACGATASAAGAAGT
TAGAGCCTCCATTCCTGCCATCCTGAGCCAGTTATCGCAAGCAATATCCC
AACTATACAAGGAAGGAGCTAGGTTTTTCTGGGTGCATAACACAGGCCCT
CAAGGATGCTTGCCCTATAGCGTTATTTACSACAAATCGAAGCCTGGTAA
TCTGGACAAGAGCGGCTGCGTGAAGCCTCTCAATGCGGTGGCTCAGGAGT
TCAACCGGCAGCTTAAGAACAGCATAATGCTGTTGAGATCACTGCTCCCT
CTTGCAGCATTCACGTACGTCGATGTGTACTCAGCTAAATACACTCTCAT
TTCTGATGCTAAAAAACAAGGTTTTGTTGATCCTTTCGACTTTTGCTGCG
GCAGTTACTACGGATTCCACATTGATTGCGGAAGGAAAGCCGTGGTGAAT
GGAACTGTGTATGGCAATCCTTGCAGCAGTCCGACAACGCATATCAGTTG
GGATGGGATACACTACTCCCAGGCCGCCAATGCACTGATTGCCAGTCGCA
TTCTCAACGGCTCACTCTCTGACCCCCCGGTTTCAATCACGCACGCTTGT
CAYAGTTCCAAGAATACATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001087GDSL
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process