MDP0000250424, MDP0000250424 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000250424
Unique Name	MDP0000250424
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	4794

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:16877221..16882014 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC011310.170	contig	MDC011310.170:236..5029 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000250424_exon_1	MDP0000250424_exon_1	Malus x domestica	CDS
MDP0000250424_exon_2	MDP0000250424_exon_2	Malus x domestica	CDS
MDP0000250424_exon_3	MDP0000250424_exon_3	Malus x domestica	CDS
MDP0000250424_exon_4	MDP0000250424_exon_4	Malus x domestica	CDS
MDP0000250424_exon_5	MDP0000250424_exon_5	Malus x domestica	CDS
MDP0000250424_exon_6	MDP0000250424_exon_6	Malus x domestica	CDS
MDP0000250424_exon_7	MDP0000250424_exon_7	Malus x domestica	CDS
MDP0000250424_exon_8	MDP0000250424_exon_8	Malus x domestica	CDS
MDP0000250424_exon_9	MDP0000250424_exon_9	Malus x domestica	CDS
MDP0000250424_exon_10	MDP0000250424_exon_10	Malus x domestica	CDS
MDP0000250424_exon_11	MDP0000250424_exon_11	Malus x domestica	CDS
MDP0000250424_exon_12	MDP0000250424_exon_12	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000250424	MDP0000250424	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 242..275 score: 0.
IPR001680	WD40 repeat	SMART	SM00320	WD40 repeats	coord: 197..235 score: 6.2coord: 238..276 score: 0.034coord: 279..318 score: 9.5coord: 466..502 score
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10	no description	coord: 458..504 score: 3.4
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 203..327 score: 14
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 180..509 score: 1.3
None	No IPR available	PANTHER	PTHR26208	FAMILY NOT NAMED	coord: 230..349 score: 2.3
None	No IPR available	PANTHER	PTHR26208:SF81	OS04G0510300 PROTEIN (FRAGMENT)	coord: 230..349 score: 2.3
None	No IPR available	SEG	seg	seg	coord: 60..80 score: NAcoord: 301..316 score: NAcoord: 556..571 score
None	No IPR available	SEG	seg	seg	coord: 64..75 score
None	No IPR available	SEG	seg	seg	coord: 59..70 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:16877221..16882014+
mRNA from alignment at MDC011310.170:236..5029+
coding sequence from alignment at MDC011310.170:236..5029+

mRNA sequence

>MDP0000250424 ID=MDP0000250424; Name=MDP0000250424; organism=Malus x domestica; type=mRNA; length=4794bp
ATGGGTCATTCATCTGTTTGGTTCTCGTTGATTCAGCCAGTTGGTACAAG
GCAATTCTGGGAACATGCCTGCTGCTTTGCAGCAAATCCAAGCACGAACT
CCTTTAACCACTGTAACTACTCAAACTATTACCTTTACTCTTTATTCATT
TTTYTTTTTCCGAATTTATTAGTTTCTTAACTTTCTTTGCCTCTTCTTTT
CTACCATACTGATCAATTAGTATGTGGCTTGTGGAGATTGTAGGACATCA
AGAGCGAAGTTAGCTTAGGTGCAACTCAGAAAAATTTGCCTATGGATCCT
TCATCAATTTATGGACAAGCAATTTTACAGTCAAAATTTAGACTGAGCAG
TGCAGGTGACAATACCTGACTGTCAGATACGGCTCATTTCTTCCTTCAGG
ATTGAATCAAGGCATTACAGGTCTTCCTTTGAAGGGTTGGCCTTTAACTG
TCAGTTATATATGGCTCTCTCTTCTTAAATGTTTCTTCTAGTGTGGATTT
AATTCTTTGTTGCAAAACTACTACATACTGCAGGGAATCAACCAATTATG
ACAGAATTTGGGTGTACAAATGCAGAAGCCAAATCTTCAGACCCAAATCA
GTTCTTTTTGGCATCTCAACAACAGCAGGTTTTGGCACAAGCTCAGGCAC
AAAATAACGTTGGAAGTTCAACAAATTATGGAGATATGGATCCTCGCAGA
TTTTCTGGACTGCGTAGGGGTAGCTTGAATTCAAAAGACGGCCAGTCTAC
CAGAAATGATGGATCTATGTTCTCTCTAGTTTTATCAAGTTCACCAAAGG
TAACCTTTCTGATGTATCTGATGAGGATTAGGATTCATGGTTGTTGTTGG
GGTTCTATCGTTAAGGATGCTGTTAAATCTATTGTCGTAAATGTTCCTGC
TCTATGTTATGAGAATTTGGTCTTTTCAACTTTTAATGGTTATGATCAAT
CATCATTTCATGTGATTTCTGAGTTTGGCTGTTGATATTTACTGTTTCCA
AAAACTTTGATCCTTTGAAAGGTTCAAATTTTCTTTTTCTGAAGCTTTGT
TGGTGTTCAACAGATAAAAATGGCACAGATGTAGCACCCTTCCTCTCAAC
AACATGAACAATTGCCACAGTAGCAACTGCAACAGGTTGTGCATAATTAT
GCAGACTTAAACTTTGTACTCTTTCTGTATGTCTTTGGTTAGGGATCCAA
TTAGTTATCACAGATGTCTGATTTAGACCAAATTCATCTCAGCTGGCAAC
AGCTTCAGTTGACAAATCTGTACGATTGTGGGATGCAGCCAATGTAATAG
TCTTTACTCTATTTTATGTATGGTCTGAGCTGATACAACCAGGATGTACC
TCAATACGTTAATAATTTCAAGATTTTTTATTCATTTGTGATTTTTAGTT
GTTAGAACGTTCTAGCGTGCATTTTCATTGTACTAGCATTGTTGACTTAT
TAATCTTATCGTGGCAGCCAAACTGTTGTTTACAAGCATATACGGGACAC
AGCTCCTACTATGTCCCTTGGCAGCCAAACTATTTTCATTAAGAAGACTG
ATTTATTTTGTTTCCGTGATCATGACAATGTTATTCAGTACTGGAATACC
AACCCATGCTCTTGTACTCGTAGTTCGAAGGTATGTAATCTTCTGTTCTT
TTCTTCCAAGTYAAGCGTTTTTTTATTTGTAMGAAAGCTATACTCACACC
CTAAAAATTGTCTTTATCATTTGGGGCAGGGAGGTACTSCACAAGTGAGG
TTTCAGCCAAGAACTGGACAACTGCTGGCAGCAGCCTCRGATAAAATTGT
TTCMATCTATGATGTCGAAACTGACAGGCAAACACATTCGTTCCAGGTAC
CATGTCTGTAAATATGGGATTAACTGAGATCCGGATTAATGTTAATCTGT
TGCTGTASGAACAAGTGATTAGTTATACGATYAAATCRTYGTCCTCAATC
TYAGGGGYACTCTGACATGGTAAACTACATTKGTTGGCATGCAAATGRAG
AATATCTGGCATCTGTYAGTCAGAACTTGGTGAAGATTTGGTYGTTATCT
TCGGGAGAGTGTATTCAGGAGCTCAGCTCTGACGGCAACCAGTTTCATTC
GTGTGTCTTTCACCCAAGTTATTCAACTCTCTTGATCATCRGAGGAATCT
CGGTAATTTCTTAACCTCTTCTAKACTTCTAGYAATAGCTTCATAAACAA
ATAAAGTAGCRGATGATGATGTTCATAGTAACTGCATTGACCATGGTAAC
CTATGGTTAATATGYTATTATGTAAAAGGGTAATTATTGCTRATAGTCGC
CTTCRTGGTTGTGAGCTAGTCTTTGGAGCTGTGGAACATGGCTGAGAACA
AGAGCRTGACAGTTGCGGCACACGAGAATATAATCTCAGCTCTGGCTCAG
TCACCTTATACTGGAATGGTTGCGTCAGCAAGTCATGACAGTTCCGTTAA
GTTATGGAAGTAAATTCAAGCTTAAAATCCTCCGAGAGYGCTTTGGTGYG
GAAATCTGGAGGGGAGACTGACTTGCAGATATAGAGTTGAATGTGCAGTG
TTTTAAGTTTAGTATTTCTAGTAAACAGCTTTATATGCAGKGTTTTCCAA
GTAACAATMTTATATGGTAATTAGATGATCCTAGTTAAAGCCCTTGACAA
ATAATGTAGAATAAGTTTCTTTTCTTATCGATGGGTTTAACTCTTCTGTC
TTAATATAATCTATTAATTTTAGTGTCTAATATAATTTTTAATTTTAGTT
TATATGTTGTTAAACAATTGCCACAACGATGATATGATGCTACAATCTTA
TGCCTTTTGAATTAGGACCCGATGAACTTAGTTTTGGATAAGATGATCAA
CATCTATTGATGTTTTTTTCTGCTGAAAACCAGAAAAAGGGAACAACACT
CTTCCTGTGGACCTGCCAATAGCACCGGCACAGGAAGCACTGTCGGCCCT
TCACCCATTTCGAGCAGCATCAACTCGCATGCCTGGTGATGGAATTAAGA
CAGCCAATAGTACGCAGAATGCCAAAAAACTTGATGATGTATGGTTTAGA
AGGAACAGGACTGGCTGCATCTTCGAATTTACTGGTATGCTGAGTTGCTG
ACTTTAAATGTTGAAGAGTACTTGAGCTGCCAATTTAATTATAACTTTTC
TCAAGGTTTCAAAAAAAAATTGTGCTGTCAGTAAACATTGCCAAAAGCTT
GGTTCTATTGTTGAGGAATCACTATTATGAATGAGTTTTGAGTATCAAAT
TTTATTGTTATCTTATGGATGCTGAAACGGAGAAGGTAGAAAAGCCAGAG
CGACTCTTCTTCTAACAGAATCGTTTTGACTCTTCTTCTCACAGAATCGT
TTTCTGTGCAGGATGACACTGAACGATTTGGAGATGTTGGTTCTTTAGAA
GATAATGTGGAATCATTTTTGTCAAATGATGGGGGAGACAGGAGGGATCT
GTATGTGACATTAAAGCAGAGTCCTAAACAGCGCCATAAAGATTCTTCTA
AAGGTAACTTGAAGGTTTACACATTGTATTCAGAGAGTTGCTCCAGTTTC
TTCACTGTACCTAAGCTGTGGCCGCATTGTCCAATTCAGGTTTTACAATT
GTGAAGTTGGCTCCAGTTTCTTCACTTTCTTCTGATGGGAAGTTACTGGC
TAGTGCTGGGCATGACAAAAAGGCATGTACTAGCGTTGTTGACTTATTAA
TCTTATCGTGGTAGCCAAACCGTTGCCTACAAGCATATACGGGACACAAC
TCACCTATTATGTCCCAATGACTTCCACCCCAAGAAGAATGATTCATTTT
GTTTCTGTGATCATGACAATGAAATTCGGTACTGGAATATTAACCCATTC
TCTTGTACTCTAGTTCGAAGGTTTGTAATCTTCTGTCCTTTCCTTCCAAG
TCAAGTGTTTTTTTATTTGTACGAATGCTATACTCACACCTTAAAAGTTG
CCCTTATCATTTGGGCCAGGGAGGTACTGCACAAGTGAGGTTTCAGCCAA
GAACTGGACAACTGCTGGCAGCAGCCTCAGATAAAATAGTTTCCATCTTT
GATGTCGAAACTGACAGGCAAACGTACTCATTCCAGGTACCATGTCTGTA
AATATGGGATTGACTAACTGAGATCCTGATTAATGTTAATCTGTTGCTTT
AGGAACAAGTGATTAGGTATAATTTGTTCTATGACTAAAATCCACAGATA
TCGGAGATCCAACGCTGGGGAACGAGGTGTTCAAGAATGCCGATGGAAGC
ATCCGCATAAAGTCCAATTCCTCGGGTAAGTTCTGGAGGCTTGCCGAGGA
TGATTGGATCTACGCTGACTCAGATGATACCACCAGCAACGACTCTAGCA
CGTTATTTTGGCCTTCTCTATAGACAACGAACCATGCATGGAGGTGGAAG
AGATTGTCCTTTCAAGGAGTATCAGTGATGTCACTTATCGCCTCAAGGGC
CTCACAATGGACAACCAAAATGTTGTCCAAAAATCGGCTTTGGTGGGGAT
GTTAATCGTAACAAAGAATCTTTTCCGGCAGAGGTAAAGGTCTCCGGCGT
CTCCTCACTTCTGCGGCTTGGTAGTGTAGGGAGCAGCACCTGCGCCACTG
TTCCAGTAATCGCAGACGGAAAGATCAAGATTGGGTCTACAGAATCAGTC
CGTTTTGGAGAAACTGAAACCATCACGAGTAGTGAAAATGAGGCTGTGTA
TAAGGCGGATGTGTCTCGTCACTTCGGAGGCTTCATGCGATATTTCTTTC
TCCTACAGCCAGCGCGGCACTCTTACTGCCGGGGAAATAGTTAA

protein sequence of MDP0000250424

>MDP0000250424 ID=MDP0000250424; Name=MDP0000250424; organism=Malus x domestica; type=polypeptide; length=639bp
MGHSSVWFSLIQPVGTRQFWEHACCFAANPSTNSFNHWNQPIMTEFGCTN
AEAKSSDPNQFFLASQQQQVLAQAQAQNNVGSSTNYGDMDPRRFSGLRRG
SLNSKDGQSTRNDGSMFSLVLSSSPKMSDLDQIHLSWQQLQLTNLYDCGM
QPIQTVVYKHIRDTAPTMSLGSQTIFIKKTDLFCFRDHDNVIQYWNTNPC
SCTRSSKGGTXQVRFQPRTGQLLAAASDKIVSIYDVETDRQTHSFQGXSD
MVNYIXWHANXEYLASVSQNLVKIWXLSSGECIQELSSDGNQFHSCVFHP
SYSTLLIIXGISSLELWNMAENKSXTVAAHENIISALAQSPYTGMVASAK
KGNNTLPVDLPIAPAQEALSALHPFRAASTRMPGDGIKTANSTQNAKKLD
DVWFRRNRTGCIFEFTESFSVQDDTERFGDVGSLEDNVESFLSNDGGDRR
DLYVTLKQSPKQRHKDSSKGFTIVKLAPVSSLSSDGKLLASAGHDKKAYI
GDPTLGNEVFKNADGSIRIKSNSSGPHNGQPKCCPKIGFGGDVNRNKESF
PAEVKVSGVSSLLRLGSVGSSTCATVPVIADGKIKIGSTESVRFGETETI
TSSENEAVYKADVSRHFGGFMRYFFLLQPARHSYCRGNS

mRNA from alignment at chr5:16877221..16882014+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000250424 ID=MDP0000250424; Name=MDP0000250424; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr5:16877221..16882014+ (Malus x domestica

mRNA from alignment at MDC011310.170:236..5029+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000250424 ID=MDP0000250424; Name=MDP0000250424; organism=Malus x domestica; type=mRNA; length=4794bp; location=Sequence derived from: MDC011310.170:236..5029+ (Malus x domestica
ATGGGTCATTCATCTGTTTGGTTCTCGTTGATTCAGCCAGTTGGTACAAG
GCAATTCTGGGAACATGCCTGCTGCTTTGCAGCAAATCCAAGCACGAACT
CCTTTAACCACTGTAACTACTCAAACTATTACCTTTACTCTTTATTCATT
TTTYTTTTTCCGAATTTATTAGTTTCTTAACTTTCTTTGCCTCTTCTTTT
CTACCATACTGATCAATTAGTATGTGGCTTGTGGAGATTGTAGGACATCA
AGAGCGAAGTTAGCTTAGGTGCAACTCAGAAAAATTTGCCTATGGATCCT
TCATCAATTTATGGACAAGCAATTTTACAGTCAAAATTTAGACTGAGCAG
TGCAGGTGACAATACCTGACTGTCAGATACGGCTCATTTCTTCCTTCAGG
ATTGAATCAAGGCATTACAGGTCTTCCTTTGAAGGGTTGGCCTTTAACTG
TCAGTTATATATGGCTCTCTCTTCTTAAATGTTTCTTCTAGTGTGGATTT
AATTCTTTGTTGCAAAACTACTACATACTGCAGGGAATCAACCAATTATG
ACAGAATTTGGGTGTACAAATGCAGAAGCCAAATCTTCAGACCCAAATCA
GTTCTTTTTGGCATCTCAACAACAGCAGGTTTTGGCACAAGCTCAGGCAC
AAAATAACGTTGGAAGTTCAACAAATTATGGAGATATGGATCCTCGCAGA
TTTTCTGGACTGCGTAGGGGTAGCTTGAATTCAAAAGACGGCCAGTCTAC
CAGAAATGATGGATCTATGTTCTCTCTAGTTTTATCAAGTTCACCAAAGG
TAACCTTTCTGATGTATCTGATGAGGATTAGGATTCATGGTTGTTGTTGG
GGTTCTATCGTTAAGGATGCTGTTAAATCTATTGTCGTAAATGTTCCTGC
TCTATGTTATGAGAATTTGGTCTTTTCAACTTTTAATGGTTATGATCAAT
CATCATTTCATGTGATTTCTGAGTTTGGCTGTTGATATTTACTGTTTCCA
AAAACTTTGATCCTTTGAAAGGTTCAAATTTTCTTTTTCTGAAGCTTTGT
TGGTGTTCAACAGATAAAAATGGCACAGATGTAGCACCCTTCCTCTCAAC
AACATGAACAATTGCCACAGTAGCAACTGCAACAGGTTGTGCATAATTAT
GCAGACTTAAACTTTGTACTCTTTCTGTATGTCTTTGGTTAGGGATCCAA
TTAGTTATCACAGATGTCTGATTTAGACCAAATTCATCTCAGCTGGCAAC
AGCTTCAGTTGACAAATCTGTACGATTGTGGGATGCAGCCAATGTAATAG
TCTTTACTCTATTTTATGTATGGTCTGAGCTGATACAACCAGGATGTACC
TCAATACGTTAATAATTTCAAGATTTTTTATTCATTTGTGATTTTTAGTT
GTTAGAACGTTCTAGCGTGCATTTTCATTGTACTAGCATTGTTGACTTAT
TAATCTTATCGTGGCAGCCAAACTGTTGTTTACAAGCATATACGGGACAC
AGCTCCTACTATGTCCCTTGGCAGCCAAACTATTTTCATTAAGAAGACTG
ATTTATTTTGTTTCCGTGATCATGACAATGTTATTCAGTACTGGAATACC
AACCCATGCTCTTGTACTCGTAGTTCGAAGGTATGTAATCTTCTGTTCTT
TTCTTCCAAGTYAAGCGTTTTTTTATTTGTAMGAAAGCTATACTCACACC
CTAAAAATTGTCTTTATCATTTGGGGCAGGGAGGTACTSCACAAGTGAGG
TTTCAGCCAAGAACTGGACAACTGCTGGCAGCAGCCTCRGATAAAATTGT
TTCMATCTATGATGTCGAAACTGACAGGCAAACACATTCGTTCCAGGTAC
CATGTCTGTAAATATGGGATTAACTGAGATCCGGATTAATGTTAATCTGT
TGCTGTASGAACAAGTGATTAGTTATACGATYAAATCRTYGTCCTCAATC
TYAGGGGYACTCTGACATGGTAAACTACATTKGTTGGCATGCAAATGRAG
AATATCTGGCATCTGTYAGTCAGAACTTGGTGAAGATTTGGTYGTTATCT
TCGGGAGAGTGTATTCAGGAGCTCAGCTCTGACGGCAACCAGTTTCATTC
GTGTGTCTTTCACCCAAGTTATTCAACTCTCTTGATCATCRGAGGAATCT
CGGTAATTTCTTAACCTCTTCTAKACTTCTAGYAATAGCTTCATAAACAA
ATAAAGTAGCRGATGATGATGTTCATAGTAACTGCATTGACCATGGTAAC
CTATGGTTAATATGYTATTATGTAAAAGGGTAATTATTGCTRATAGTCGC
CTTCRTGGTTGTGAGCTAGTCTTTGGAGCTGTGGAACATGGCTGAGAACA
AGAGCRTGACAGTTGCGGCACACGAGAATATAATCTCAGCTCTGGCTCAG
TCACCTTATACTGGAATGGTTGCGTCAGCAAGTCATGACAGTTCCGTTAA
GTTATGGAAGTAAATTCAAGCTTAAAATCCTCCGAGAGYGCTTTGGTGYG
GAAATCTGGAGGGGAGACTGACTTGCAGATATAGAGTTGAATGTGCAGTG
TTTTAAGTTTAGTATTTCTAGTAAACAGCTTTATATGCAGKGTTTTCCAA
GTAACAATMTTATATGGTAATTAGATGATCCTAGTTAAAGCCCTTGACAA
ATAATGTAGAATAAGTTTCTTTTCTTATCGATGGGTTTAACTCTTCTGTC
TTAATATAATCTATTAATTTTAGTGTCTAATATAATTTTTAATTTTAGTT
TATATGTTGTTAAACAATTGCCACAACGATGATATGATGCTACAATCTTA
TGCCTTTTGAATTAGGACCCGATGAACTTAGTTTTGGATAAGATGATCAA
CATCTATTGATGTTTTTTTCTGCTGAAAACCAGAAAAAGGGAACAACACT
CTTCCTGTGGACCTGCCAATAGCACCGGCACAGGAAGCACTGTCGGCCCT
TCACCCATTTCGAGCAGCATCAACTCGCATGCCTGGTGATGGAATTAAGA
CAGCCAATAGTACGCAGAATGCCAAAAAACTTGATGATGTATGGTTTAGA
AGGAACAGGACTGGCTGCATCTTCGAATTTACTGGTATGCTGAGTTGCTG
ACTTTAAATGTTGAAGAGTACTTGAGCTGCCAATTTAATTATAACTTTTC
TCAAGGTTTCAAAAAAAAATTGTGCTGTCAGTAAACATTGCCAAAAGCTT
GGTTCTATTGTTGAGGAATCACTATTATGAATGAGTTTTGAGTATCAAAT
TTTATTGTTATCTTATGGATGCTGAAACGGAGAAGGTAGAAAAGCCAGAG
CGACTCTTCTTCTAACAGAATCGTTTTGACTCTTCTTCTCACAGAATCGT
TTTCTGTGCAGGATGACACTGAACGATTTGGAGATGTTGGTTCTTTAGAA
GATAATGTGGAATCATTTTTGTCAAATGATGGGGGAGACAGGAGGGATCT
GTATGTGACATTAAAGCAGAGTCCTAAACAGCGCCATAAAGATTCTTCTA
AAGGTAACTTGAAGGTTTACACATTGTATTCAGAGAGTTGCTCCAGTTTC
TTCACTGTACCTAAGCTGTGGCCGCATTGTCCAATTCAGGTTTTACAATT
GTGAAGTTGGCTCCAGTTTCTTCACTTTCTTCTGATGGGAAGTTACTGGC
TAGTGCTGGGCATGACAAAAAGGCATGTACTAGCGTTGTTGACTTATTAA
TCTTATCGTGGTAGCCAAACCGTTGCCTACAAGCATATACGGGACACAAC
TCACCTATTATGTCCCAATGACTTCCACCCCAAGAAGAATGATTCATTTT
GTTTCTGTGATCATGACAATGAAATTCGGTACTGGAATATTAACCCATTC
TCTTGTACTCTAGTTCGAAGGTTTGTAATCTTCTGTCCTTTCCTTCCAAG
TCAAGTGTTTTTTTATTTGTACGAATGCTATACTCACACCTTAAAAGTTG
CCCTTATCATTTGGGCCAGGGAGGTACTGCACAAGTGAGGTTTCAGCCAA
GAACTGGACAACTGCTGGCAGCAGCCTCAGATAAAATAGTTTCCATCTTT
GATGTCGAAACTGACAGGCAAACGTACTCATTCCAGGTACCATGTCTGTA
AATATGGGATTGACTAACTGAGATCCTGATTAATGTTAATCTGTTGCTTT
AGGAACAAGTGATTAGGTATAATTTGTTCTATGACTAAAATCCACAGATA
TCGGAGATCCAACGCTGGGGAACGAGGTGTTCAAGAATGCCGATGGAAGC
ATCCGCATAAAGTCCAATTCCTCGGGTAAGTTCTGGAGGCTTGCCGAGGA
TGATTGGATCTACGCTGACTCAGATGATACCACCAGCAACGACTCTAGCA
CGTTATTTTGGCCTTCTCTATAGACAACGAACCATGCATGGAGGTGGAAG
AGATTGTCCTTTCAAGGAGTATCAGTGATGTCACTTATCGCCTCAAGGGC
CTCACAATGGACAACCAAAATGTTGTCCAAAAATCGGCTTTGGTGGGGAT
GTTAATCGTAACAAAGAATCTTTTCCGGCAGAGGTAAAGGTCTCCGGCGT
CTCCTCACTTCTGCGGCTTGGTAGTGTAGGGAGCAGCACCTGCGCCACTG
TTCCAGTAATCGCAGACGGAAAGATCAAGATTGGGTCTACAGAATCAGTC
CGTTTTGGAGAAACTGAAACCATCACGAGTAGTGAAAATGAGGCTGTGTA
TAAGGCGGATGTGTCTCGTCACTTCGGAGGCTTCATGCGATATTTCTTTC
TCCTACAGCCAGCGCGGCACTCTTACTGCCGGGGAAATAGTTAA

Coding sequence (CDS) from alignment at MDC011310.170:236..5029+

>MDP0000250424 ID=MDP0000250424; Name=MDP0000250424; organism=Malus x domestica; type=CDS; length=1920bp; location=Sequence derived from: MDC011310.170:236..5029+ (Malus x domestica
ATGGGTCATTCATCTGTTTGGTTCTCGTTGATTCAGCCAGTTGGTACAAG
GCAATTCTGGGAACATGCCTGCTGCTTTGCAGCAAATCCAAGCACGAACT
CCTTTAACCACTGGAATCAACCAATTATGACAGAATTTGGGTGTACAAAT
GCAGAAGCCAAATCTTCAGACCCAAATCAGTTCTTTTTGGCATCTCAACA
ACAGCAGGTTTTGGCACAAGCTCAGGCACAAAATAACGTTGGAAGTTCAA
CAAATTATGGAGATATGGATCCTCGCAGATTTTCTGGACTGCGTAGGGGT
AGCTTGAATTCAAAAGACGGCCAGTCTACCAGAAATGATGGATCTATGTT
CTCTCTAGTTTTATCAAGTTCACCAAAGATGTCTGATTTAGACCAAATTC
ATCTCAGCTGGCAACAGCTTCAGTTGACAAATCTGTACGATTGTGGGATG
CAGCCAATCCAAACTGTTGTTTACAAGCATATACGGGACACAGCTCCTAC
TATGTCCCTTGGCAGCCAAACTATTTTCATTAAGAAGACTGATTTATTTT
GTTTCCGTGATCATGACAATGTTATTCAGTACTGGAATACCAACCCATGC
TCTTGTACTCGTAGTTCGAAGGGAGGTACTSCACAAGTGAGGTTTCAGCC
AAGAACTGGACAACTGCTGGCAGCAGCCTCRGATAAAATTGTTTCMATCT
ATGATGTCGAAACTGACAGGCAAACACATTCGTTCCAGGGGYACTCTGAC
ATGGTAAACTACATTKGTTGGCATGCAAATGRAGAATATCTGGCATCTGT
YAGTCAGAACTTGGTGAAGATTTGGTYGTTATCTTCGGGAGAGTGTATTC
AGGAGCTCAGCTCTGACGGCAACCAGTTTCATTCGTGTGTCTTTCACCCA
AGTTATTCAACTCTCTTGATCATCRGAGGAATCTCGTCTTTGGAGCTGTG
GAACATGGCTGAGAACAAGAGCRTGACAGTTGCGGCACACGAGAATATAA
TCTCAGCTCTGGCTCAGTCACCTTATACTGGAATGGTTGCGTCAGCAAAA
AAAGGGAACAACACTCTTCCTGTGGACCTGCCAATAGCACCGGCACAGGA
AGCACTGTCGGCCCTTCACCCATTTCGAGCAGCATCAACTCGCATGCCTG
GTGATGGAATTAAGACAGCCAATAGTACGCAGAATGCCAAAAAACTTGAT
GATGTATGGTTTAGAAGGAACAGGACTGGCTGCATCTTCGAATTTACTGA
ATCGTTTTCTGTGCAGGATGACACTGAACGATTTGGAGATGTTGGTTCTT
TAGAAGATAATGTGGAATCATTTTTGTCAAATGATGGGGGAGACAGGAGG
GATCTGTATGTGACATTAAAGCAGAGTCCTAAACAGCGCCATAAAGATTC
TTCTAAAGGTTTTACAATTGTGAAGTTGGCTCCAGTTTCTTCACTTTCTT
CTGATGGGAAGTTACTGGCTAGTGCTGGGCATGACAAAAAGGCATATATC
GGAGATCCAACGCTGGGGAACGAGGTGTTCAAGAATGCCGATGGAAGCAT
CCGCATAAAGTCCAATTCCTCGGGGCCTCACAATGGACAACCAAAATGTT
GTCCAAAAATCGGCTTTGGTGGGGATGTTAATCGTAACAAAGAATCTTTT
CCGGCAGAGGTAAAGGTCTCCGGCGTCTCCTCACTTCTGCGGCTTGGTAG
TGTAGGGAGCAGCACCTGCGCCACTGTTCCAGTAATCGCAGACGGAAAGA
TCAAGATTGGGTCTACAGAATCAGTCCGTTTTGGAGAAACTGAAACCATC
ACGAGTAGTGAAAATGAGGCTGTGTATAAGGCGGATGTGTCTCGTCACTT
CGGAGGCTTCATGCGATATTTCTTTCTCCTACAGCCAGCGCGGCACTCTT
ACTGCCGGGGAAATAGTTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_rpt
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding