MDP0000251585, MDP0000251585 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000251585
Unique NameMDP0000251585
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length2366
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000251585_exon_1MDP0000251585_exon_1Malus x domesticaCDS
MDP0000251585_exon_2MDP0000251585_exon_2Malus x domesticaCDS
MDP0000251585_exon_3MDP0000251585_exon_3Malus x domesticaCDS
MDP0000251585_exon_4MDP0000251585_exon_4Malus x domesticaCDS
MDP0000251585_exon_5MDP0000251585_exon_5Malus x domesticaCDS
MDP0000251585_exon_6MDP0000251585_exon_6Malus x domesticaCDS
MDP0000251585_exon_7MDP0000251585_exon_7Malus x domesticaCDS
MDP0000251585_exon_8MDP0000251585_exon_8Malus x domesticaCDS
MDP0000251585_exon_9MDP0000251585_exon_9Malus x domesticaCDS
MDP0000251585_exon_10MDP0000251585_exon_10Malus x domesticaCDS
MDP0000251585_exon_11MDP0000251585_exon_11Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000251585MDP0000251585Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003337Trehalose-phosphatasePFAMPF02358Trehalose_PPasecoord: 123..367
score: 1.6
IPR003337Trehalose-phosphataseTIGRFAMsTIGR00685T6PP: trehalose-phosphatasecoord: 117..369
score: 7
IPR006379HAD-superfamily hydrolase, subfamily IIBTIGRFAMsTIGR01484HAD-SF-IIB: HAD hydrolase, family IIBcoord: 122..340
score: 5
IPR023214HAD-like domainGENE3D3.40.50.1000no descriptioncoord: 290..376
score: 1.6
IPR023214HAD-like domainSUPERFAMILY56784HAD-likecoord: 120..377
score: 1.4
NoneNo IPR availablePANTHERPTHR10788TREHALOSE-6-PHOSPHATE SYNTHASEcoord: 55..368
score: 2e

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000251585 ID=MDP0000251585; Name=MDP0000251585; organism=Malus x domestica; type=mRNA; length=2366bp
ATGGACCTGAAATCAAATCATGCTTCTCCCGTTCTTGCTGATCCTCCACC
CTTGAGCAAGTCAAGACTTGGTGGCGTTCATACCAGCCTGTTACCATATT
CAACTCCAGGAGCAGCTTTCCCTGGAAGTCTATACCTAACAATCCCTAGG
AAAAAGAATGTACTTGATGACGTTCGCTCTAGCTCTTGGCTCGATGCCAT
GAAAGCTTCATCGCCTCCTCACAGAAAGATAACGAAGGATGTTAACAATG
AGTCTGGGGCAACAGATGCTGATATATCCTATCACACATGGATGGTAACA
ATTATTCCTTCATGTTTTTTTTWAMCCTCCAATAGGCTTTGAATCTAAGT
TATTTATGCAGCACTTAACATCTTTCTGTCTAATCTTTCAGGTCAAATAT
CCATCCGCACTTACATCTTTTGAGCAAATCTCTAATTATGCCAAAGGCAA
GAGAATAGCATTGTTTCTTGATTATGACGGGACTCTTTCACCAATTGTAG
ATAACCCTGACTGTGCCTTTATGTCTGATGCCGTAAGAACAACTTGATAC
ATGTATATTTTATGCAAAACTTAAAACGCTCTGCTTGCTCATCAAAGATG
TTTTAATCTTTTCAGATGCGTGCAGCCGTAAAAAAGGTAGCAAAACATTT
CCCAACAGCAATTATTAGTGGAAGAAGCCATGACAAGGTAATTGCTAGCC
AGAGCCTTAAACATGAGCATGACATACTCTTCGGCGATCATCTGTTTGTT
TACATTTTTTACCATCTTTTCTGGTGCTTGCTGATTTTGATTGTTCTGTG
TCCTATTCTATCAGGTATACGAGTTTGTAAAACTAAATGAACTCTATTAT
GCGGGTAGTCATGGGATGGACATAATGGCCCCGGTTATACAAACTATAAA
TGATGACCAGAGAAACTGTTTTAAGTCAACTGACAAAAAGGTAATTGGCT
GCAAGCTCTCGCCCTCTCATGCGCACAAAAAAAATATGTTCGTTTGTTCT
GTTCTTTTAACATCTTTTGGTTTTTTGTACATTCAGGGTAAGGCGGTTAA
TTTGTTCCAGCCTGCAGCTGAATTTTTACCGATGATCAGAGAGGTTTGTA
AATTTCTTCTCTGTAATCATGTGCATCAATATAATAAACAAGATGTCCCT
TCCTATCTTTTCTGTTACGAATGATGAGATAGTGTTCTGATTTTTTTTAT
GCTTGACCAGGTATTTAAATTGCTTGTTGAAAGTACGAAAGACATTGAAG
GAGCTATAGTTGAAGATAATAAGTTTTGTGTCTCTGTACATTACCGCAAT
GTAGATGAGAAGGTAGTCTCTTGTTCGAGTACTAAATTTGATTTACTTTG
AGTTTAAGATATATATTTTTTTCTGGCAGTGTGTTATGCAGTAAAAACTA
GGAGAGGCTGGAGGAGCCTCTCTTTTGTTATGCAGTAAATTTTTCTTTTG
CGTTTACTAATTATACACTGTTGTCTTCAGAGTTGGCCTGCGGTTCTGCA
ATGTGTCCATGAAATTCTTAAAGACTACCCTCGTTTGCACTTGACTCATG
GGCGAAAGGTATTTTTAAAAGCCTAAATGCAGGCTGATCTACCTTAATCT
TCTATCTTTGTGCTATGGTAATTTTAATTCAATATATTTTTGTCCTATTT
TCTTTATTTGTAGGTTTTAGAGGTTCGACCTACAATAAACTGGGATAAAG
GGAGGGCCGTCACGTTTTTACTCGAATCTCTTGGTGAGTATTTCTACTCT
CTCTTGCTCCTTTAAAGTGATCTTCAAGAATTCATTGAATTCCATCTTAT
ACTCGCCCTACGATGGAATTTTTTGTATCAGGACTAAGTAATTGCGAAGA
TGTTCTTCCAATATATATTGGCGACGACCGCACAGATGAAGATGCATTCA
AGGTAAAACTCGAAAATTTTGTTATCATGTTGTTCTGACGGTCTTCTATA
AAACCGATCGAATTGCTAACTTGATGGGGGACTGTTACAGGTCTTGAGGG
AAGGAAACCAAGGTTACGGCATTTTAGTCTCGGCCGAGCCCAAGGACAGC
AATGCATTTTACTCTCTCCGGGATCCCTCGGAGGTAATGGAGTTTCTTAA
GTCACTGGTTATATGGAGGAAGTCAAGTGCTCTATAAAAATTACTGCATA
GATAATTACGTAGAAGACATAATCTTGACATGCTTATACGACGAAAACAG
GCTGGACGGACTGCTTATTTTAGGTTTTTTCTAGATAAGTATACTCCAAG
AGGTTTGGGGAAAGCAGGTCGGCATGGAAGAACGCGTGCTGGTCTGTGTT
CGTCGCTTCTTGCCCTTTTTTGGCCGTGAAAAGCTTTGTGCCTTAATTGC
AAATGCCTTCGGTTAA
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protein sequence of MDP0000251585

>MDP0000251585 ID=MDP0000251585; Name=MDP0000251585; organism=Malus x domestica; type=polypeptide; length=411bp
MDLKSNHASPVLADPPPLSKSRLGGVHTSLLPYSTPGAAFPGSLYLTIPR
KKNVLDDVRSSSWLDAMKASSPPHRKITKDVNNESGATDADISYHTWMVK
YPSALTSFEQISNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSDAMRAAV
KKVAKHFPTAIISGRSHDKVYEFVKLNELYYAGSHGMDIMAPVIQTINDD
QRNCFKSTDKKGKAVNLFQPAAEFLPMIREVFKLLVESTKDIEGAIVEDN
KFCVSVHYRNVDEKSWPAVLQCVHEILKDYPRLHLTHGRKVLEVRPTINW
DKGRAVTFLLESLGLSNCEDVLPIYIGDDRTDEDAFKVLREGNQGYGILV
SAEPKDSNAFYSLRDPSEISILQEVWGKQVGMEERVLVCVRRFLPFFGRE
KLCALIANAFG
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mRNA from alignment at chr7:22432596..22434961+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000251585 ID=MDP0000251585; Name=MDP0000251585; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr7:22432596..22434961+ (Malus x domestica
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mRNA from alignment at MDC016162.94:311..2676+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000251585 ID=MDP0000251585; Name=MDP0000251585; organism=Malus x domestica; type=mRNA; length=2366bp; location=Sequence derived from: MDC016162.94:311..2676+ (Malus x domestica
ATGGACCTGAAATCAAATCATGCTTCTCCCGTTCTTGCTGATCCTCCACC
CTTGAGCAAGTCAAGACTTGGTGGCGTTCATACCAGCCTGTTACCATATT
CAACTCCAGGAGCAGCTTTCCCTGGAAGTCTATACCTAACAATCCCTAGG
AAAAAGAATGTACTTGATGACGTTCGCTCTAGCTCTTGGCTCGATGCCAT
GAAAGCTTCATCGCCTCCTCACAGAAAGATAACGAAGGATGTTAACAATG
AGTCTGGGGCAACAGATGCTGATATATCCTATCACACATGGATGGTAACA
ATTATTCCTTCATGTTTTTTTTWAMCCTCCAATAGGCTTTGAATCTAAGT
TATTTATGCAGCACTTAACATCTTTCTGTCTAATCTTTCAGGTCAAATAT
CCATCCGCACTTACATCTTTTGAGCAAATCTCTAATTATGCCAAAGGCAA
GAGAATAGCATTGTTTCTTGATTATGACGGGACTCTTTCACCAATTGTAG
ATAACCCTGACTGTGCCTTTATGTCTGATGCCGTAAGAACAACTTGATAC
ATGTATATTTTATGCAAAACTTAAAACGCTCTGCTTGCTCATCAAAGATG
TTTTAATCTTTTCAGATGCGTGCAGCCGTAAAAAAGGTAGCAAAACATTT
CCCAACAGCAATTATTAGTGGAAGAAGCCATGACAAGGTAATTGCTAGCC
AGAGCCTTAAACATGAGCATGACATACTCTTCGGCGATCATCTGTTTGTT
TACATTTTTTACCATCTTTTCTGGTGCTTGCTGATTTTGATTGTTCTGTG
TCCTATTCTATCAGGTATACGAGTTTGTAAAACTAAATGAACTCTATTAT
GCGGGTAGTCATGGGATGGACATAATGGCCCCGGTTATACAAACTATAAA
TGATGACCAGAGAAACTGTTTTAAGTCAACTGACAAAAAGGTAATTGGCT
GCAAGCTCTCGCCCTCTCATGCGCACAAAAAAAATATGTTCGTTTGTTCT
GTTCTTTTAACATCTTTTGGTTTTTTGTACATTCAGGGTAAGGCGGTTAA
TTTGTTCCAGCCTGCAGCTGAATTTTTACCGATGATCAGAGAGGTTTGTA
AATTTCTTCTCTGTAATCATGTGCATCAATATAATAAACAAGATGTCCCT
TCCTATCTTTTCTGTTACGAATGATGAGATAGTGTTCTGATTTTTTTTAT
GCTTGACCAGGTATTTAAATTGCTTGTTGAAAGTACGAAAGACATTGAAG
GAGCTATAGTTGAAGATAATAAGTTTTGTGTCTCTGTACATTACCGCAAT
GTAGATGAGAAGGTAGTCTCTTGTTCGAGTACTAAATTTGATTTACTTTG
AGTTTAAGATATATATTTTTTTCTGGCAGTGTGTTATGCAGTAAAAACTA
GGAGAGGCTGGAGGAGCCTCTCTTTTGTTATGCAGTAAATTTTTCTTTTG
CGTTTACTAATTATACACTGTTGTCTTCAGAGTTGGCCTGCGGTTCTGCA
ATGTGTCCATGAAATTCTTAAAGACTACCCTCGTTTGCACTTGACTCATG
GGCGAAAGGTATTTTTAAAAGCCTAAATGCAGGCTGATCTACCTTAATCT
TCTATCTTTGTGCTATGGTAATTTTAATTCAATATATTTTTGTCCTATTT
TCTTTATTTGTAGGTTTTAGAGGTTCGACCTACAATAAACTGGGATAAAG
GGAGGGCCGTCACGTTTTTACTCGAATCTCTTGGTGAGTATTTCTACTCT
CTCTTGCTCCTTTAAAGTGATCTTCAAGAATTCATTGAATTCCATCTTAT
ACTCGCCCTACGATGGAATTTTTTGTATCAGGACTAAGTAATTGCGAAGA
TGTTCTTCCAATATATATTGGCGACGACCGCACAGATGAAGATGCATTCA
AGGTAAAACTCGAAAATTTTGTTATCATGTTGTTCTGACGGTCTTCTATA
AAACCGATCGAATTGCTAACTTGATGGGGGACTGTTACAGGTCTTGAGGG
AAGGAAACCAAGGTTACGGCATTTTAGTCTCGGCCGAGCCCAAGGACAGC
AATGCATTTTACTCTCTCCGGGATCCCTCGGAGGTAATGGAGTTTCTTAA
GTCACTGGTTATATGGAGGAAGTCAAGTGCTCTATAAAAATTACTGCATA
GATAATTACGTAGAAGACATAATCTTGACATGCTTATACGACGAAAACAG
GCTGGACGGACTGCTTATTTTAGGTTTTTTCTAGATAAGTATACTCCAAG
AGGTTTGGGGAAAGCAGGTCGGCATGGAAGAACGCGTGCTGGTCTGTGTT
CGTCGCTTCTTGCCCTTTTTTGGCCGTGAAAAGCTTTGTGCCTTAATTGC
AAATGCCTTCGGTTAA
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Coding sequence (CDS) from alignment at MDC016162.94:311..2676+

>MDP0000251585 ID=MDP0000251585; Name=MDP0000251585; organism=Malus x domestica; type=CDS; length=1236bp; location=Sequence derived from: MDC016162.94:311..2676+ (Malus x domestica
ATGGACCTGAAATCAAATCATGCTTCTCCCGTTCTTGCTGATCCTCCACC
CTTGAGCAAGTCAAGACTTGGTGGCGTTCATACCAGCCTGTTACCATATT
CAACTCCAGGAGCAGCTTTCCCTGGAAGTCTATACCTAACAATCCCTAGG
AAAAAGAATGTACTTGATGACGTTCGCTCTAGCTCTTGGCTCGATGCCAT
GAAAGCTTCATCGCCTCCTCACAGAAAGATAACGAAGGATGTTAACAATG
AGTCTGGGGCAACAGATGCTGATATATCCTATCACACATGGATGGTCAAA
TATCCATCCGCACTTACATCTTTTGAGCAAATCTCTAATTATGCCAAAGG
CAAGAGAATAGCATTGTTTCTTGATTATGACGGGACTCTTTCACCAATTG
TAGATAACCCTGACTGTGCCTTTATGTCTGATGCCATGCGTGCAGCCGTA
AAAAAGGTAGCAAAACATTTCCCAACAGCAATTATTAGTGGAAGAAGCCA
TGACAAGGTATACGAGTTTGTAAAACTAAATGAACTCTATTATGCGGGTA
GTCATGGGATGGACATAATGGCCCCGGTTATACAAACTATAAATGATGAC
CAGAGAAACTGTTTTAAGTCAACTGACAAAAAGGGTAAGGCGGTTAATTT
GTTCCAGCCTGCAGCTGAATTTTTACCGATGATCAGAGAGGTATTTAAAT
TGCTTGTTGAAAGTACGAAAGACATTGAAGGAGCTATAGTTGAAGATAAT
AAGTTTTGTGTCTCTGTACATTACCGCAATGTAGATGAGAAGAGTTGGCC
TGCGGTTCTGCAATGTGTCCATGAAATTCTTAAAGACTACCCTCGTTTGC
ACTTGACTCATGGGCGAAAGGTTTTAGAGGTTCGACCTACAATAAACTGG
GATAAAGGGAGGGCCGTCACGTTTTTACTCGAATCTCTTGGACTAAGTAA
TTGCGAAGATGTTCTTCCAATATATATTGGCGACGACCGCACAGATGAAG
ATGCATTCAAGGTCTTGAGGGAAGGAAACCAAGGTTACGGCATTTTAGTC
TCGGCCGAGCCCAAGGACAGCAATGCATTTTACTCTCTCCGGGATCCCTC
GGAGATAAGTATACTCCAAGAGGTTTGGGGAAAGCAGGTCGGCATGGAAG
AACGCGTGCTGGTCTGTGTTCGTCGCTTCTTGCCCTTTTTTGGCCGTGAA
AAGCTTTGTGCCTTAATTGCAAATGCCTTCGGTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003337Trehalose_PPase
IPR006379HAD-SF_hydro_IIB
IPR023214HAD_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0005992trehalose biosynthetic process
GO:0008152metabolic process