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Transcript Overview
Name | MDP0000253638 |
Unique Name | MDP0000253638 |
Type | mRNA |
Organism | Malus x domestica (Apple) |
Sequence length | 3946 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
MDP0000253638 | MDP0000253638 | Malus x domestica | polypeptide |
InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR005067 | Fatty acid desaturase, type 2 | PIR | PIRSF000346 | Delta-9 acyl-ACP desaturase | coord: 1..393 score: 1.9e |
IPR005067 | Fatty acid desaturase, type 2 | PFAM | PF03405 | FA_desaturase_2 | coord: 63..391 score: 3.7e |
IPR005803 | Stearoyl-ACP desaturase, conserved site | PROSITE | PS00574 | FATTY_ACID_DESATUR_2 | coord: 313..332 score |
IPR009078 | Ferritin/ribonucleotide reductase-like | SUPERFAMILY | 47240 | Ferritin-like | coord: 49..393 score: 3.4e |
IPR012348 | Ribonucleotide reductase-related | GENE3D | 1.10.620.20 | no description | coord: 50..392 score: 2.4e |
None | No IPR available | SEG | seg | seg | coord: 52..63 score |
IPR002328 | Alcohol dehydrogenase, zinc-type, conserved site | PROSITE | PS00059 | ADH_ZINC | coord: 30..44 score |
Sequences
The
following sequences are available for this feature:
mRNA sequence >MDP0000253638 ID=MDP0000253638; Name=MDP0000253638; organism=Malus x domestica; type=mRNA; length=3946bp ATGGCTGTGAGTCTGAATTCGATGCTGACCTTCCCGTCTCACAGCCTCAC TGCCAAGTCCCACAATCTCAGATCTCCCAAAATATTCATGGCCTCCACTC TTCACTCCTCCWCCAAGTGAGTTTCCTTCTATTCAATTCATTTCTGCATT TTCATCGCATGCGTGCGCGGCTGATCATCTTGGGTTCTCGGATGCCCACT TGGCGAAAATGCAAATGGGTATCGCCAAGAACGAGTTTTTAACCATTCTG CTGATCTGGGTTTTTACTTTGCTAAAGGTTTATGCTAATTCAGCTGAATA GGGGATGTTTTTGGATTTCTGGGCTTCTATTTTGCGTTAATCTCATTCAT TTTGAGAAATATTTTGTTGTTATTGAGGTTAGTGAACGTAATTGAAATTT ATCTTATTCCTATTTTATTTTTTTGTTTAATTTTTGGGAACTGGTTGTTA GCCAATTCCTCTTTTCTTTCACCTGCATGCATGGTTCTCAGTTCAATTTT TGCTGCAGGACATATAAAAGAACTAATGATGATTGGATGTTTTTTGAATC TTATTTTCTGAAAAAATTAATAAAATCCTCTTCGTGCTCTTATTGCTATT GAATATATTCTATTGATCTTGCTGGGATATTTTAAAAGTATTTCTGTTAT TTAAGAAAATCGCCAGTAGGTTTTCTGTTTGTTGTTTTCAATCTGAAGGC ATGCGTGTGTTATTTAACTATTTCTTACATTAGTTGAGCTGTAGATCTGA TTTCTTGGGTTTCTCTTTCTTTTTGAACTGTGTCCTGTAAGTTGACTAGT TTCATTTATTTAATCGATTTACTCAGTATATGTTATTTCATATACAAGTA TAATGTATTAGTTCCCCCCATTTCTTATTTTTTTTTGTGCAATTTGTTGT TTTGTATTTCTCCGAGTACTTGTTATCAAAGAGTTATGGAGAAAGAATAT GGGAGAAAGGGTAAATGAAGAAAGTTGGTGGGAGGGAGAAGAAGAAACAA AGAATAAAGGTCGTACCCAGTGCACAAGGCTCCCGCTTTACGCAGGGTCT GGGAGAGGTGAATGTCGGCTAGCCTTACCCCCATTTATGGAGAGGCTGCT CCCAAGTCTCGAACCYGAGACCTACCGCTCATGGGCGAAKRCACTTGCCA TCGCACCAAGTGCGACCTCTTAAGAAGAAACAAAGAATAATTAATGAAAA TAAAAACAGCTTTAAAATAGTTTTGGGTTTTAGTTTTCATTTTGTGTACT TTTCCTCGTACATTTTCTCTACTTCATTCAGACAACTCTTCTTCATCCTT CTTTCCCCATATCTCTAGCACAAAAAAGTGAACTAAAACTAAAAACTAAA TGGCCCTTTTTGTGTGCTTAATGTTTGAGTCTACGCATTTGCTTGTTTGT CAATTATATATCATTTTATGGGTTCGTGCAATGTAGGTTGTCAGATCATT GTTTTCATTGTGCTAGACAATTATTCCTTATATTTTCAAGCGTTTAGGTG TCATACTTGTTGATATGGTTAGTGGTATTCTTATTGAGATTTGCAGTGGT ATCCATGAATCCACTATGCACATGTTCTCAAGTTTTCAGTTTTAGCTGGT ACACCGTGAGCAACAACTATGGTTTCTTCTGTTCAATTTCACTTCTGAAT TTGATAACTGCCTGTATATTTGATTTCTCTGTTCTGTATTGTGGTTGGTC ATGTTTGTTCGCGTCTTCTTAGATGAGCTTACATCTCTTTTCACTCTCAC TCTCTCTCTCCCTCTCCCTCTCCCTCTCCTCTCCACCCACCCCAATTRGC AATCTTAGTCTCTTGCTCGGTTCCTGTTTTTGTTAACTTTGTATWACTCT ATTTACGCTCTATCTCCCACCTCTATAYAGTTATATAGAGAACTATGAGG TTGTTAGATTCAGTAATTGAAGCATACCAATTTTAGATCTTTTCTTCTGT TTTTTACAGAGAGACTGAGAATCTGAAGAAGTCTTTTGGCCCTCCGCGTG AGGTACATGTTCAGGTGACTCATTCAATGCCTCCACAACAGATTGAGATT TTCAAGTCATTAGAGGATTGGGCTGAGAATAACATCTTGGTGCACCTAAA GCCTGTTGAGAAATGTTGGCAACCACAAGATTTTCTTCCACTTCCCGAGT CAGATGGATTCGAGGAGCAAGTTAAGGAGTTGAGGGAAAGAGCAAGGGAA ATTCCTGATGATTACTTTGTTGTGTTGGTTGGTGATATGATCACAGAAGA AGCCCTTCCAACGTACCAGACAATGCTTAATACCCTAGACGGAGTTCGGG ATGAGACTGGTGCAAGCCTTACTTCCTGGGCTATTTGGACCAGGGCGTGG ACTGCTGAAGAGAATAGGCATGGTGATCTTCTTAACAAGTATCTTTATCT CTCTGGACGAGTAGATATGAGACAAATCGAGAAAACAATTCAGTACCTTA TTGGATCTGGAATGGTGAGTTCTTTGTTTCCTCTCTTTTGGTCTGTTTTT GTTATTTTTTGGACCCTGATATTTTTTTGAGACTTTTCTGAGTCCACGCT TAGGAATTTCAGCATTGTAGCTAAGATTTTAAAGTTATATTAATCTTGAA GGATACAAACTTGTGAACTAAGGGGCAATGCAATTTGTTATCTTCKTTTT TTCTTTTACATTACTTGCTGACTGGAGTTCGGGATGCTTAAAACTTTTCA GCTGGCATAAATATATTACAGTAGGGAAGATGAGAACAAGTTATGAAATG TTAATAGTATAYGATGTCCTAAATTTCCGGCGTATATGGAAGACTTTCTT TATGTTCATTTATAATACTATGCTTATGGCACCTTAGAGAACCTCTGCAT TGTAACTGTTGTAGAATTCTAGTCTAGTTGATGCTCGAGTTTTTAAGGGT CATGTCTAATTATCAATTCCTTGATGTAAAAAAAAAGGGATGTTTAAATT TCTGGTGATGATTATGAACAAAATGGTTGTCTATTATCTCATGTCTGCTT GGAAAATGAAGCATTTATGTGTGACTTATTGAGTTAACAAACTATTTCGA GGAATAGCCATTGAGAGATTACCTTGATTAGAATGTTGTACCTGCATGAT TGTCACTTATTTTCATGGATGTAATCTCATGAGTTATCACTACGATGATT TAGACACACAAGCACACACATGCTGACAGAAGATTCTTAAGAAAGAACAT CTACCCCATTCTCCCACTCTCCAATTTTGGTTGCTTGATTTAAACTCTGT ACAGCTTAAGCTTTTTAAACATAGTTGAAATTTTCTGTTTATACTGTTAK TACCATGACTATTGTTACTATTATTATTATAAATATTAATATTTCATTTA TACTATTTTGGTTTTCAATTTTGCGTTTTCTGTAGGATCCTAAAACAGAG AACAATCCCTACCTTGGGTTCATTTACACTTCATTCCAAGAGAGGGCAAC ATTCATCTCCCATGGGAACACAGCCAGGCAAGCCAAAGAGCATGGGGACC TGAAATTGGCTCAGATATGCGGCACCATTGCCTCGGATGAAAAGCGCCAT GAAACTGCGTATACAAAGATTGTGGAAAAGCTGTTTGAGATTGATCCAGA TGGCACTGTGTTGGCCTTAGCTGACATGATGAAGAAAAAGATATCAATGC CTGCCCACTTGATGTACGATGGTCAGGATGATAATCTGTTTGATCATTTC TCAGCTGTTGCCCAGAGGCTTGAGGTGTATACTGCCAGGGATTATGCTGA TATATTGGAGTTTTTGGTTGGAAGATGGAATGTGGAGAAGTTGACTGGTC TTTCTGGCGAGGGACGCATGGCGCAAGATTTTGTGTGTAAATTGCCACAG AGAATCAGGAGGTTGGAGGAAAGAGCACAGGGAAGGGCCAAGGCTTCTTC CCTTGTTCCATTCAGCTGGATTTTTGGTAGGGAAGTAAAGGTTTAA back to topprotein sequence of MDP0000253638 >MDP0000253638 ID=MDP0000253638; Name=MDP0000253638; organism=Malus x domestica; type=polypeptide; length=393bp MAVSLNSMLTFPSHSLTAKSHNLRSPKIFMASTLHSSXKETENLKKSFGP PREVHVQVTHSMPPQQIEIFKSLEDWAENNILVHLKPVEKCWQPQDFLPL PESDGFEEQVKELRERAREIPDDYFVVLVGDMITEEALPTYQTMLNTLDG VRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQ YLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARQAKEHGDLKLAQ ICGTIASDEKRHETAYTKIVEKLFEIDPDGTVLALADMMKKKISMPAHLM YDGQDDNLFDHFSAVAQRLEVYTARDYADILEFLVGRWNVEKLTGLSGEG RMAQDFVCKLPQRIRRLEERAQGRAKASSLVPFSWIFGREVKV back to topmRNA from alignment at chr12:31589796..31593741- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000253638 ID=MDP0000253638; Name=MDP0000253638; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr12:31589796..31593741- (Malus x domestica
back to topmRNA from alignment at MDC023815.55:6647..10592- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000253638 ID=MDP0000253638; Name=MDP0000253638; organism=Malus x domestica; type=mRNA; length=3946bp; location=Sequence derived from: MDC023815.55:6647..10592- (Malus x domestica ATGGCTGTGAGTCTGAATTCGATGCTGACCTTCCCGTCTCACAGCCTCAC
TGCCAAGTCCCACAATCTCAGATCTCCCAAAATATTCATGGCCTCCACTC
TTCACTCCTCCWCCAAGTGAGTTTCCTTCTATTCAATTCATTTCTGCATT
TTCATCGCATGCGTGCGCGGCTGATCATCTTGGGTTCTCGGATGCCCACT
TGGCGAAAATGCAAATGGGTATCGCCAAGAACGAGTTTTTAACCATTCTG
CTGATCTGGGTTTTTACTTTGCTAAAGGTTTATGCTAATTCAGCTGAATA
GGGGATGTTTTTGGATTTCTGGGCTTCTATTTTGCGTTAATCTCATTCAT
TTTGAGAAATATTTTGTTGTTATTGAGGTTAGTGAACGTAATTGAAATTT
ATCTTATTCCTATTTTATTTTTTTGTTTAATTTTTGGGAACTGGTTGTTA
GCCAATTCCTCTTTTCTTTCACCTGCATGCATGGTTCTCAGTTCAATTTT
TGCTGCAGGACATATAAAAGAACTAATGATGATTGGATGTTTTTTGAATC
TTATTTTCTGAAAAAATTAATAAAATCCTCTTCGTGCTCTTATTGCTATT
GAATATATTCTATTGATCTTGCTGGGATATTTTAAAAGTATTTCTGTTAT
TTAAGAAAATCGCCAGTAGGTTTTCTGTTTGTTGTTTTCAATCTGAAGGC
ATGCGTGTGTTATTTAACTATTTCTTACATTAGTTGAGCTGTAGATCTGA
TTTCTTGGGTTTCTCTTTCTTTTTGAACTGTGTCCTGTAAGTTGACTAGT
TTCATTTATTTAATCGATTTACTCAGTATATGTTATTTCATATACAAGTA
TAATGTATTAGTTCCCCCCATTTCTTATTTTTTTTTGTGCAATTTGTTGT
TTTGTATTTCTCCGAGTACTTGTTATCAAAGAGTTATGGAGAAAGAATAT
GGGAGAAAGGGTAAATGAAGAAAGTTGGTGGGAGGGAGAAGAAGAAACAA
AGAATAAAGGTCGTACCCAGTGCACAAGGCTCCCGCTTTACGCAGGGTCT
GGGAGAGGTGAATGTCGGCTAGCCTTACCCCCATTTATGGAGAGGCTGCT
CCCAAGTCTCGAACCYGAGACCTACCGCTCATGGGCGAAKRCACTTGCCA
TCGCACCAAGTGCGACCTCTTAAGAAGAAACAAAGAATAATTAATGAAAA
TAAAAACAGCTTTAAAATAGTTTTGGGTTTTAGTTTTCATTTTGTGTACT
TTTCCTCGTACATTTTCTCTACTTCATTCAGACAACTCTTCTTCATCCTT
CTTTCCCCATATCTCTAGCACAAAAAAGTGAACTAAAACTAAAAACTAAA
TGGCCCTTTTTGTGTGCTTAATGTTTGAGTCTACGCATTTGCTTGTTTGT
CAATTATATATCATTTTATGGGTTCGTGCAATGTAGGTTGTCAGATCATT
GTTTTCATTGTGCTAGACAATTATTCCTTATATTTTCAAGCGTTTAGGTG
TCATACTTGTTGATATGGTTAGTGGTATTCTTATTGAGATTTGCAGTGGT
ATCCATGAATCCACTATGCACATGTTCTCAAGTTTTCAGTTTTAGCTGGT
ACACCGTGAGCAACAACTATGGTTTCTTCTGTTCAATTTCACTTCTGAAT
TTGATAACTGCCTGTATATTTGATTTCTCTGTTCTGTATTGTGGTTGGTC
ATGTTTGTTCGCGTCTTCTTAGATGAGCTTACATCTCTTTTCACTCTCAC
TCTCTCTCTCCCTCTCCCTCTCCCTCTCCTCTCCACCCACCCCAATTRGC
AATCTTAGTCTCTTGCTCGGTTCCTGTTTTTGTTAACTTTGTATWACTCT
ATTTACGCTCTATCTCCCACCTCTATAYAGTTATATAGAGAACTATGAGG
TTGTTAGATTCAGTAATTGAAGCATACCAATTTTAGATCTTTTCTTCTGT
TTTTTACAGAGAGACTGAGAATCTGAAGAAGTCTTTTGGCCCTCCGCGTG
AGGTACATGTTCAGGTGACTCATTCAATGCCTCCACAACAGATTGAGATT
TTCAAGTCATTAGAGGATTGGGCTGAGAATAACATCTTGGTGCACCTAAA
GCCTGTTGAGAAATGTTGGCAACCACAAGATTTTCTTCCACTTCCCGAGT
CAGATGGATTCGAGGAGCAAGTTAAGGAGTTGAGGGAAAGAGCAAGGGAA
ATTCCTGATGATTACTTTGTTGTGTTGGTTGGTGATATGATCACAGAAGA
AGCCCTTCCAACGTACCAGACAATGCTTAATACCCTAGACGGAGTTCGGG
ATGAGACTGGTGCAAGCCTTACTTCCTGGGCTATTTGGACCAGGGCGTGG
ACTGCTGAAGAGAATAGGCATGGTGATCTTCTTAACAAGTATCTTTATCT
CTCTGGACGAGTAGATATGAGACAAATCGAGAAAACAATTCAGTACCTTA
TTGGATCTGGAATGGTGAGTTCTTTGTTTCCTCTCTTTTGGTCTGTTTTT
GTTATTTTTTGGACCCTGATATTTTTTTGAGACTTTTCTGAGTCCACGCT
TAGGAATTTCAGCATTGTAGCTAAGATTTTAAAGTTATATTAATCTTGAA
GGATACAAACTTGTGAACTAAGGGGCAATGCAATTTGTTATCTTCKTTTT
TTCTTTTACATTACTTGCTGACTGGAGTTCGGGATGCTTAAAACTTTTCA
GCTGGCATAAATATATTACAGTAGGGAAGATGAGAACAAGTTATGAAATG
TTAATAGTATAYGATGTCCTAAATTTCCGGCGTATATGGAAGACTTTCTT
TATGTTCATTTATAATACTATGCTTATGGCACCTTAGAGAACCTCTGCAT
TGTAACTGTTGTAGAATTCTAGTCTAGTTGATGCTCGAGTTTTTAAGGGT
CATGTCTAATTATCAATTCCTTGATGTAAAAAAAAAGGGATGTTTAAATT
TCTGGTGATGATTATGAACAAAATGGTTGTCTATTATCTCATGTCTGCTT
GGAAAATGAAGCATTTATGTGTGACTTATTGAGTTAACAAACTATTTCGA
GGAATAGCCATTGAGAGATTACCTTGATTAGAATGTTGTACCTGCATGAT
TGTCACTTATTTTCATGGATGTAATCTCATGAGTTATCACTACGATGATT
TAGACACACAAGCACACACATGCTGACAGAAGATTCTTAAGAAAGAACAT
CTACCCCATTCTCCCACTCTCCAATTTTGGTTGCTTGATTTAAACTCTGT
ACAGCTTAAGCTTTTTAAACATAGTTGAAATTTTCTGTTTATACTGTTAK
TACCATGACTATTGTTACTATTATTATTATAAATATTAATATTTCATTTA
TACTATTTTGGTTTTCAATTTTGCGTTTTCTGTAGGATCCTAAAACAGAG
AACAATCCCTACCTTGGGTTCATTTACACTTCATTCCAAGAGAGGGCAAC
ATTCATCTCCCATGGGAACACAGCCAGGCAAGCCAAAGAGCATGGGGACC
TGAAATTGGCTCAGATATGCGGCACCATTGCCTCGGATGAAAAGCGCCAT
GAAACTGCGTATACAAAGATTGTGGAAAAGCTGTTTGAGATTGATCCAGA
TGGCACTGTGTTGGCCTTAGCTGACATGATGAAGAAAAAGATATCAATGC
CTGCCCACTTGATGTACGATGGTCAGGATGATAATCTGTTTGATCATTTC
TCAGCTGTTGCCCAGAGGCTTGAGGTGTATACTGCCAGGGATTATGCTGA
TATATTGGAGTTTTTGGTTGGAAGATGGAATGTGGAGAAGTTGACTGGTC
TTTCTGGCGAGGGACGCATGGCGCAAGATTTTGTGTGTAAATTGCCACAG
AGAATCAGGAGGTTGGAGGAAAGAGCACAGGGAAGGGCCAAGGCTTCTTC
CCTTGTTCCATTCAGCTGGATTTTTGGTAGGGAAGTAAAGGTTTAA back to topCoding sequence (CDS) from alignment at MDC023815.55:6647..10592- >MDP0000253638 ID=MDP0000253638; Name=MDP0000253638; organism=Malus x domestica; type=CDS; length=1182bp; location=Sequence derived from: MDC023815.55:6647..10592- (Malus x domestica ATGGCTGTGAGTCTGAATTCGATGCTGACCTTCCCGTCTCACAGCCTCAC TGCCAAGTCCCACAATCTCAGATCTCCCAAAATATTCATGGCCTCCACTC TTCACTCCTCCWCCAAAGAGACTGAGAATCTGAAGAAGTCTTTTGGCCCT CCGCGTGAGGTACATGTTCAGGTGACTCATTCAATGCCTCCACAACAGAT TGAGATTTTCAAGTCATTAGAGGATTGGGCTGAGAATAACATCTTGGTGC ACCTAAAGCCTGTTGAGAAATGTTGGCAACCACAAGATTTTCTTCCACTT CCCGAGTCAGATGGATTCGAGGAGCAAGTTAAGGAGTTGAGGGAAAGAGC AAGGGAAATTCCTGATGATTACTTTGTTGTGTTGGTTGGTGATATGATCA CAGAAGAAGCCCTTCCAACGTACCAGACAATGCTTAATACCCTAGACGGA GTTCGGGATGAGACTGGTGCAAGCCTTACTTCCTGGGCTATTTGGACCAG GGCGTGGACTGCTGAAGAGAATAGGCATGGTGATCTTCTTAACAAGTATC TTTATCTCTCTGGACGAGTAGATATGAGACAAATCGAGAAAACAATTCAG TACCTTATTGGATCTGGAATGGATCCTAAAACAGAGAACAATCCCTACCT TGGGTTCATTTACACTTCATTCCAAGAGAGGGCAACATTCATCTCCCATG GGAACACAGCCAGGCAAGCCAAAGAGCATGGGGACCTGAAATTGGCTCAG ATATGCGGCACCATTGCCTCGGATGAAAAGCGCCATGAAACTGCGTATAC AAAGATTGTGGAAAAGCTGTTTGAGATTGATCCAGATGGCACTGTGTTGG CCTTAGCTGACATGATGAAGAAAAAGATATCAATGCCTGCCCACTTGATG TACGATGGTCAGGATGATAATCTGTTTGATCATTTCTCAGCTGTTGCCCA GAGGCTTGAGGTGTATACTGCCAGGGATTATGCTGATATATTGGAGTTTT TGGTTGGAAGATGGAATGTGGAGAAGTTGACTGGTCTTTCTGGCGAGGGA CGCATGGCGCAAGATTTTGTGTGTAAATTGCCACAGAGAATCAGGAGGTT GGAGGAAAGAGCACAGGGAAGGGCCAAGGCTTCTTCCCTTGTTCCATTCA GCTGGATTTTTGGTAGGGAAGTAAAGGTTTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0006631 | fatty acid metabolic process |
GO:0055114 | obsolete oxidation-reduction process |
GO:0006633 | fatty acid biosynthetic process |
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