MDP0000257050, MDP0000257050 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000257050
Unique NameMDP0000257050
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1095
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000257050_exon_1MDP0000257050_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000257050MDP0000257050Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domain, cyclin-likePROFILEPS50181FBOXcoord: 1..43
score: 10
IPR001810F-box domain, cyclin-likeSUPERFAMILY81383F-box domaincoord: 3..45
score: 4.7
IPR013187F-box associated domain, type 3PFAMPF08268FBA_3coord: 206..288
score: 2.9
IPR017451F-box associated interaction domainTIGRFAMsTIGR01640F_box_assoc_1: F-box protein interaction domaincoord: 96..292
score: 1.8
NoneNo IPR availableGENE3D1.20.1280.50no descriptioncoord: 3..39
score: 4.5
NoneNo IPR availablePANTHERPTHR10775UNCHARACTERIZEDcoord: 4..239
score: 5.4
NoneNo IPR availablePANTHERPTHR10775:SF7F-BOX FAMILY PROTEINcoord: 4..239
score: 5.4
NoneNo IPR availableSEGsegsegcoord: 69..81
score
NoneNo IPR availableSEGsegsegcoord: 8..20
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000257050 ID=MDP0000257050; Name=MDP0000257050; organism=Malus x domestica; type=mRNA; length=1095bp
ATGGCCTTTCCTGCGAACCTGATGCTCCACATTCTCTCCAGATTGCCCGT
CAAATCTCTGGTTCGATTCGCCTCGGTGCGGAAAGCATGGGATGCTCTGA
TCAGGGACTCCCATTTCATTTCTCAGCACCTCCGTCTCAACATTTCGAAA
ACCGGATGCCTAGTGGTAAAATATCGTTCACAAATTACTCGTAAGCATGT
CATTTCTCTGCTGCTTTTAGATGGTTATGTGTTATCAGATTTGGAGATAC
CATCTGTGATGGATTCCAATCACTTGAAATTCGTGGGATCTTGCAATGGG
TTACTTTGTTTAGCTCATGATACTTTTGCTAATCTTGGGTCGCCCATAAT
TTTGTGGAATCCTGCCATGGCGGAATTTAGGGTCCTCCCAGACRGTCTTA
TCGGTAGTGCCAATGTACATAATGCGCGGGTCTCCGGTGTTGCTCTTGGA
TTCGGGTACCACCCGCTTMTTGATGACTATAAGTTGGTGAGGATTGTCTC
TTTGTCTCGCTCGAACACACCTTGCATCCGCGCGGAGGTGTATTCGCTGA
GAACGGACTGTTGGCTGGAGATTGATACGYTTTACTTCGATATTTATGAA
CCTTCGTGCACTGCTGTGAATGGTTTCCTTTATTGGATTGCATACGGCAG
GGTTGAGTCCGAACTGATCTTATCGTTTGACATGCGTAATGAGGCGTTTG
GGCAGTTACAGTTGCCGGATTTAAACGTTTTAGGAAGTCCAATGTGCAAA
AAACTCGCGGCGTTGAAGGAGTCTCTTTATTTGATGGCCTATACTTTCAG
TGGAAGGCAAAAGGAGTTTTATGTGTGGCAAATGGTTGAGCAGAATGCTG
AGGTGTTATGGAAATTGGAATGCACAATTGGACCCCTGCTCGGAGTTGAG
AGGCCGCTGGGCTGCAGTTTATATGGCGAAATATATATCGAAAGTAGCAG
AGGCGAGCTGGTTTTGTATGATCCAACTACTCAGGAAACTAAAAACGTTC
CAACTCGTGGCCTTCGTTTTTCTTCAGAAGTCCATTTTTATGTGGAGAGC
CTAGTTTCGACTAATGGACAAGGTGAAAGTCGTACAAGAGACTAA
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protein sequence of MDP0000257050

>MDP0000257050 ID=MDP0000257050; Name=MDP0000257050; organism=Malus x domestica; type=polypeptide; length=364bp
MAFPANLMLHILSRLPVKSLVRFASVRKAWDALIRDSHFISQHLRLNISK
TGCLVVKYRSQITRKHVISLLLLDGYVLSDLEIPSVMDSNHLKFVGSCNG
LLCLAHDTFANLGSPIILWNPAMAEFRVLPDXLIGSANVHNARVSGVALG
FGYHPLXDDYKLVRIVSLSRSNTPCIRAEVYSLRTDCWLEIDTXYFDIYE
PSCTAVNGFLYWIAYGRVESELILSFDMRNEAFGQLQLPDLNVLGSPMCK
KLAALKESLYLMAYTFSGRQKEFYVWQMVEQNAEVLWKLECTIGPLLGVE
RPLGCSLYGEIYIESSRGELVLYDPTTQETKNVPTRGLRFSSEVHFYVES
LVSTNGQGESRTRD
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mRNA from alignment at chr17:17443212..17444306-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000257050 ID=MDP0000257050; Name=MDP0000257050; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr17:17443212..17444306- (Malus x domestica
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mRNA from alignment at MDC005789.222:6981..8075-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000257050 ID=MDP0000257050; Name=MDP0000257050; organism=Malus x domestica; type=mRNA; length=1095bp; location=Sequence derived from: MDC005789.222:6981..8075- (Malus x domestica
ATGGCCTTTCCTGCGAACCTGATGCTCCACATTCTCTCCAGATTGCCCGT
CAAATCTCTGGTTCGATTCGCCTCGGTGCGGAAAGCATGGGATGCTCTGA
TCAGGGACTCCCATTTCATTTCTCAGCACCTCCGTCTCAACATTTCGAAA
ACCGGATGCCTAGTGGTAAAATATCGTTCACAAATTACTCGTAAGCATGT
CATTTCTCTGCTGCTTTTAGATGGTTATGTGTTATCAGATTTGGAGATAC
CATCTGTGATGGATTCCAATCACTTGAAATTCGTGGGATCTTGCAATGGG
TTACTTTGTTTAGCTCATGATACTTTTGCTAATCTTGGGTCGCCCATAAT
TTTGTGGAATCCTGCCATGGCGGAATTTAGGGTCCTCCCAGACRGTCTTA
TCGGTAGTGCCAATGTACATAATGCGCGGGTCTCCGGTGTTGCTCTTGGA
TTCGGGTACCACCCGCTTMTTGATGACTATAAGTTGGTGAGGATTGTCTC
TTTGTCTCGCTCGAACACACCTTGCATCCGCGCGGAGGTGTATTCGCTGA
GAACGGACTGTTGGCTGGAGATTGATACGYTTTACTTCGATATTTATGAA
CCTTCGTGCACTGCTGTGAATGGTTTCCTTTATTGGATTGCATACGGCAG
GGTTGAGTCCGAACTGATCTTATCGTTTGACATGCGTAATGAGGCGTTTG
GGCAGTTACAGTTGCCGGATTTAAACGTTTTAGGAAGTCCAATGTGCAAA
AAACTCGCGGCGTTGAAGGAGTCTCTTTATTTGATGGCCTATACTTTCAG
TGGAAGGCAAAAGGAGTTTTATGTGTGGCAAATGGTTGAGCAGAATGCTG
AGGTGTTATGGAAATTGGAATGCACAATTGGACCCCTGCTCGGAGTTGAG
AGGCCGCTGGGCTGCAGTTTATATGGCGAAATATATATCGAAAGTAGCAG
AGGCGAGCTGGTTTTGTATGATCCAACTACTCAGGAAACTAAAAACGTTC
CAACTCGTGGCCTTCGTTTTTCTTCAGAAGTCCATTTTTATGTGGAGAGC
CTAGTTTCGACTAATGGACAAGGTGAAAGTCGTACAAGAGACTAA
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Coding sequence (CDS) from alignment at MDC005789.222:6981..8075-

>MDP0000257050 ID=MDP0000257050; Name=MDP0000257050; organism=Malus x domestica; type=CDS; length=1095bp; location=Sequence derived from: MDC005789.222:6981..8075- (Malus x domestica
ATGGCCTTTCCTGCGAACCTGATGCTCCACATTCTCTCCAGATTGCCCGT
CAAATCTCTGGTTCGATTCGCCTCGGTGCGGAAAGCATGGGATGCTCTGA
TCAGGGACTCCCATTTCATTTCTCAGCACCTCCGTCTCAACATTTCGAAA
ACCGGATGCCTAGTGGTAAAATATCGTTCACAAATTACTCGTAAGCATGT
CATTTCTCTGCTGCTTTTAGATGGTTATGTGTTATCAGATTTGGAGATAC
CATCTGTGATGGATTCCAATCACTTGAAATTCGTGGGATCTTGCAATGGG
TTACTTTGTTTAGCTCATGATACTTTTGCTAATCTTGGGTCGCCCATAAT
TTTGTGGAATCCTGCCATGGCGGAATTTAGGGTCCTCCCAGACRGTCTTA
TCGGTAGTGCCAATGTACATAATGCGCGGGTCTCCGGTGTTGCTCTTGGA
TTCGGGTACCACCCGCTTMTTGATGACTATAAGTTGGTGAGGATTGTCTC
TTTGTCTCGCTCGAACACACCTTGCATCCGCGCGGAGGTGTATTCGCTGA
GAACGGACTGTTGGCTGGAGATTGATACGYTTTACTTCGATATTTATGAA
CCTTCGTGCACTGCTGTGAATGGTTTCCTTTATTGGATTGCATACGGCAG
GGTTGAGTCCGAACTGATCTTATCGTTTGACATGCGTAATGAGGCGTTTG
GGCAGTTACAGTTGCCGGATTTAAACGTTTTAGGAAGTCCAATGTGCAAA
AAACTCGCGGCGTTGAAGGAGTCTCTTTATTTGATGGCCTATACTTTCAG
TGGAAGGCAAAAGGAGTTTTATGTGTGGCAAATGGTTGAGCAGAATGCTG
AGGTGTTATGGAAATTGGAATGCACAATTGGACCCCTGCTCGGAGTTGAG
AGGCCGCTGGGCTGCAGTTTATATGGCGAAATATATATCGAAAGTAGCAG
AGGCGAGCTGGTTTTGTATGATCCAACTACTCAGGAAACTAAAAACGTTC
CAACTCGTGGCCTTCGTTTTTCTTCAGAAGTCCATTTTTATGTGGAGAGC
CTAGTTTCGACTAATGGACAAGGTGAAAGTCGTACAAGAGACTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR013187F-box-assoc_dom_typ3
IPR017451F-box-assoc_interact_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding