MDP0000261354, MDP0000261354 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000261354
Unique Name	MDP0000261354
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	5818

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr12	chromosome	chr12:4691792..4697609 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC020973.349	contig	MDC020973.349:3139..8956 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000261354_exon_1	MDP0000261354_exon_1	Malus x domestica	CDS
MDP0000261354_exon_2	MDP0000261354_exon_2	Malus x domestica	CDS
MDP0000261354_exon_3	MDP0000261354_exon_3	Malus x domestica	CDS
MDP0000261354_exon_4	MDP0000261354_exon_4	Malus x domestica	CDS
MDP0000261354_exon_5	MDP0000261354_exon_5	Malus x domestica	CDS
MDP0000261354_exon_6	MDP0000261354_exon_6	Malus x domestica	CDS
MDP0000261354_exon_7	MDP0000261354_exon_7	Malus x domestica	CDS
MDP0000261354_exon_8	MDP0000261354_exon_8	Malus x domestica	CDS
MDP0000261354_exon_9	MDP0000261354_exon_9	Malus x domestica	CDS
MDP0000261354_exon_10	MDP0000261354_exon_10	Malus x domestica	CDS
MDP0000261354_exon_11	MDP0000261354_exon_11	Malus x domestica	CDS
MDP0000261354_exon_12	MDP0000261354_exon_12	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000261354	MDP0000261354	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	PFAM	PF00443	UCH	coord: 215..566 score: 2.8
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	PROFILE	PS50235	UCH_2_3	coord: 217..570 score: 24
IPR002083	MATH	PFAM	PF00917	MATH	coord: 78..198 score: 2.4
IPR002083	MATH	SMART	SM00061	meprin and TRAF homology	coord: 73..178 score: 8.2
IPR002083	MATH	PROFILE	PS50144	MATH	coord: 71..197 score: 36
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 68..209 score: 7.7
IPR013322	TRAF-type	GENE3D	2.60.210.10	no description	coord: 70..200 score: 5.2
IPR018200	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	PROSITE	PS00973	UCH_2_2	coord: 488..505 score
None	No IPR available	PANTHER	PTHR24006	FAMILY NOT NAMED	coord: 150..590 score: 2e
None	No IPR available	PANTHER	PTHR24006:SF110	SUBFAMILY NOT NAMED	coord: 150..590 score: 2e
None	No IPR available	SEG	seg	seg	coord: 490..504 score
None	No IPR available	SUPERFAMILY	54001	Cysteine proteinases	coord: 211..602 score: 1.1
None	No IPR available	SEG	seg	seg	coord: 2..15 score: NAcoord: 16..31 score
None	No IPR available	SEG	seg	seg	coord: 72..78 score
None	No IPR available	SEG	seg	seg	coord: 6..19 score
None	No IPR available	SEG	seg	seg	coord: 26..40 score: NAcoord: 55..68 score
None	No IPR available	SEG	seg	seg	coord: 46..57 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:4691792..4697609-
mRNA from alignment at MDC020973.349:3139..8956-
coding sequence from alignment at MDC020973.349:3139..8956-

mRNA sequence

>MDP0000261354 ID=MDP0000261354; Name=MDP0000261354; organism=Malus x domestica; type=mRNA; length=5818bp
ATGGCAGTGATGATGGAGGCACATGGTGAACAGATGACGATATTGTACAC
CATCATTCAATACATGATATTGACCGGCAAGGTGAAAAGAATATTGGGGA
AGAAGACGAAAACCCACATATGCTTTTGATTTTTGATTTTTGATTTATTT
TATATAGAACATGATTGGATTTCCAATAAAATAAAAGTTAGATTTCCAAT
TAAAAAAAAGTTTGATTACGAGTTAAACTCTTAAGTGAGGTTAGGTGAAC
GACCAAATGTTAAATTGGTTCAACTAAAATTATTAAAATATATATATATA
TATATATATATATATATATATATATATATATATTAAGTGAATGACCAAAT
GTTAAATTGGTTCTACTAAAATTATTAAAATATATATATATATATATATA
TATATATATATATATATTTTTTTTTTTTTGAAACTGATGCTGCAAAAAAT
GGTTGATGAGAGGTTTGATTGATGGTATGCATGTAATTTTTTTTTTGAAA
GTTTTGATTATACTAAAACTATACAAACTGAATCTACTAAAAAGTATACA
AACTGATTATACATATATTTGATACTGATAAAAATGGTCGATGGGTTGGA
CTAATGACATGCATGTAATTTTGTTCAAAATATAYAAACTAATTCTGCAA
AAATGGTCGAAGACGGGTKGAACTGATTYTGCAAAAATGGTCGWAGACGG
GTTGAATTGATTCTGCAAAAATTGTCGAAGATGGTYAATTGATTATGCAA
AATGGTGGAGAGTAAGTTGAATTGATTCTACAAAAATGGTGGAGAGCGGG
TTAAGCTGATTGTGCAAAAATGGTCGAATAYGGRTTGAACTGATTYTGTA
AAAATGGTGGATGACGAGTTGAACTAATTCAGYAACAAAGGTCGATGACT
GATTGAACTGATTCTGMAAGAATGGTCAGGACAACTTGAACTAATTTTGC
CAAAATGATGTAGGACGTGATAAACTAATTCTGTATAAATGGTCGAAGAC
GAGTTGAACTGATTCTGCAAAAATAGTGGAGGACGGTTGAATTGATTCTA
CAAAAATAGTAGAATACRGGTTGAACTAATTTTGCAAGAATGATCGAGGA
CGAGTTGAACTGATTCTGCAAAAATGGTTGAAGACGRRTTAAATTAATTC
TGCAAAAATGRTTGAGAACTGATTGAAYTGATTCTACAAAAATRATTGRS
GACAAAWTGAATTTATTCTAATAATAAAAGATACAAAMYGAATCTACATA
TAACTTCAAAACTGATTCTACAAAGTTAGGTGGGAAAGATGGTGCAAAAG
AAACTCCTTTTYGCAGTGCTWATTCTTTRCCATCGGTGTCCGAGTTTGAT
AAAGAATACGCACTGGGAAAAGGAATTTCCTTTTTCTTCACGACGGAACT
ACTTGCCCTACAAGTTTCCCTCATTCAATGAAGGGGTGGTCCCTCAAGTC
TCAACGTGGCAACTTACACCAGAGCAAATTAGAGGGTTCACTTGGCCYTC
TTAAAACTGAGTATGAYTGATATTTTAAAACATTATTTTTATGTTTTTGG
TCTGGACTTGAATTSTTTTTATGTTTTTGTGCCTYTTTWAAAAAATTAGT
ACAGTTCCTTAAAATATAGTAAAWKTTTTTATCTTTATATATAAAAACTC
CTYTCAAATTRWGAATTTTCATCTAACTCTTTGTCATCTCATATTTTTTT
TGCACGAAGWTTCGTAAGRTAAACACRAGAATTATGCAAAAACATAAAAA
TGGCAAATAGTACAAAAAGAGTCTTATTTTGAGGGAGTTTTTCATAACAG
TTCTCTCTGTGCGGAATTACATCTATAATTTTATATTGTGATAAAGACTG
AATCGCTTTTCACGCTTTTTTGATTCAGAAAGAAAATTTTGTTAATTAAT
TTAGATACCTTTCCGCACTGAGTGCTGGATTGTATGAAAGAAAACTAATG
AAAAGGCTTGAAAACTTTTGAGTTTTAATGATAAGGACAAAATAAAGGGT
AAAGTGAATAGTACCAGGATTGACTTTTTAGTGTAAAAATGTGGTTTTTC
GTTAAAGTGAACAGTAACAGGTGCTTTTCGTTAAAATTCCCTTGAATGAA
AGTAGGAGAATCCAGTCCATCACCCACTTGAACAAAAGCTTGATTACCAG
TGTACGAGGAAAGATCACATGCCGTCATTTGCCTGTTAAAAGTAACGCAC
GCGACCCTCTGGTTAGGTTTTTCTTGATCAGAGCTCTGATTTTTGCTTAT
TTTGTTAGCAGCAGCAGCAGCAAGAGGACGAAGAGATACTTGTGCCGCAC
TCGGATTTGGTCGAAGGCCCTCAGCCTATGGAAGGTTTAATTTTTAGCAA
TTTTTCGATGATTTGCTGTTTGAATTTCTTAAGTTTGTGTTTACGGTGTT
GCCTAATCTGAAAGAATTGATTTTTGTGCGAATTTGGCGTCACGAGGTTT
GATTAGAGGGCAAGTGATTGCATTTTCTTTAGTGTGGTGGTTTTGTTGTT
TTGAAATTTATGGTATTTGGTGTGTTGCTAGTAGCCCAAGTGGAGCCGGC
TTGTACAGTTGATAGTCAGCCAGTGGAGGATCCTCCAGCGATGAAATTCA
CTTGGACAATTGAGAACTTTACTAGGTTGAACACCAAGAAGCACTACTAC
TCTGACATGTTCGTTGTTGGCGGCTATAAATGGTATTTTCTCTTGTCTAC
CTGATGTCAAAAACTGATTTATGCTGCTTAAGTTTGGCTTATATTTGTAT
CTCGGCGTTTGGATTTTGAATTGCTTTTGGTATGTTTGATCAGGCGGATA
CTAATATTTCCCAAGGGAAACAATGTGGACTACTTGTCAATGTATTTGGA
TGCGGCAGATTCCAGGACATTGCCATATGGGTGGAGTAGGTGTGCGCAGT
TCGGCTTGGCAGTAGTTAATCAGATCCATCCCAAGTACTCAATAAGAAAG
GGTATATTTCTCTATTAGTCTTATTTCCTTTTAGCATTCAATTTTGTGCT
TTATGACCAGAGTAGTCAAATTTTAAGACCTTTGTCCTTGATTGTTGTAT
GATATTGCAGACACACAACACCAGTTCAATGCAAGAGAAGGTGACTGGGG
ATACACTTCATTCATGCTTCTTGGTGATCTTTATGACCAGAGTAGGGGAT
ATCTGGTGAACGATACAGTTGTGGTTGAAGCTGAGATTTCTGTCTGTAAG
GTTCTTGATTATGGGTCATATGACTCGAAAAAGGAAACTGGTTATGTTGG
GCTCAAGAATCAGGGAGCAAATGGTTATATGAATTCTCTACTCCGGACTT
GGTACCATATACCATACTTCAGAAAGGTTGTTTACGTGATCTCCTGTTGT
TACTGTAAGCTAAACATGAATTGTTCTTTTGAATTTTATATGCAAGATCT
TAATGTTGGAGTTACTTACCAGTGTGTGCATCATATGCCGACAACTGAGG
ATGACATGCCTTCAGGAAGCATCCCTTTGGCACTACAACGTTTATTCTAT
AAACTTCAATACAGTGAAAGCAGTGTTGCAAGTAAAGAATTGACCAAGTC
TTTTGGTCCCACACATGATTTGTTTGTGAAACATGACCTGCCGGAACTTA
ATAGAGTTCTTATCAAAAAGCTTGAAGATAAAATGAAGGTATGGGAATGT
TTCAGTTTTTTCCATGAGTATAGTTTGTGTTTCATTTTCATTCTGATAAT
TGTTCTGTGGGTCCAGGGAACTATTGTGGAGGGTACAATACAACAGTTAT
TTGAAGGACATTACAGGAATTACATTGAATGCTTCAATGTGGACTACAAA
TCTACATGGAAAGAATCATTTTATGGTAATATTTTCTTGCACAATTTAAA
GTGTTAAGAGTGTGAAGTAGTTTGTGAATGTCAACACATGCCGCTGGTTT
CTTCTTATTTCTTTGCAGACCTCCAGCTTGATGTGAAAGGCTGTCGGGAT
GTTTATGCTTCTTTTAGTAAGTTTTTGGAAGTTAAACGTCTTGAGGGTGA
CAACAAATACCACTCCGAAGAACTAGGTTTGCAGGTTAATTACCAAATTC
CATTGGTGACTGCATTTATACTGTGATTCTAATCTGAGGCTGCTATTAGT
TGTTTCCTTCCACAAACCACTTTATAAAACTAGTGGTCTTGCATTATTTC
CTCTTCCACTTAGATTTTTAACATATGGTTCTCACAACGTTATATTTTAA
GTTCTGATTGGATGCCGTCCTTAGTTTTGTCTTTTTATTAAATCACTTGC
TGACGCCAGTATTCTTACATATATTTCTTTGATATTAAAAATTTAAAATA
TTGTTCTCAAGGAATATTTTGGATGTTTATTCCAGGATGCTAAGAAGGGT
GTCCTGTTTATCGACTTCCCTCCCGTTCTTCAACTTCAGCTAAAGCGATT
TGAATATGATTTTATGCGGGACACTACGGTTAAGGTTTGTACTGGAAGCT
CATCTTCCTCCTGCTGCGTGTTTTATTACATGAAACATTGAAAGTGTAAT
GCTTTACTACAAAGCTTCTTAGTTGAAAACAAAACTGTAGCATGTAAATA
TTAATGGAAAGCAAATAAACTATCATGGTAAGAATGTTGTATTATTTTTT
TTTTTTGGCAGATAAATGATCGCTATGAATTTCCTCTTCAACTTGACCTT
GATAGGGAGAATGGAAAATATCTATCACCTGAATCAGATAAGAGTGTTCG
CAACCTCTACACTCTTCATAGGTATCTATTTTGCCTTGCACTATTGCACG
ATATAATATGGTTCATCTGTTTCCTAAATTTGGCATGTTATTTCAATGAA
TATTACTTTCTAGACCTTTGTATGCACTCTGTGCTTGGCAATATCTGAAG
ACGGTTATTCGAACCTGCTTTTTCATCTGCCTGTTTGGTGCTCTTCATGT
TGTGTGGAGCTTMAAATTTTTACGTTGTAATTGGTTACTTACTATGATAA
TTTTCTACTGTTGCAGTGTCTTGGTTCATAGTGGTGGGGTTCATGGTGGA
CATTACCATGCTTTCATCAGACCAACCCTTTCAGACCAGTGGTACGGATC
TCCTGGAATCGATTCTCTCTGTAATTGTTTCCAGTCTCACACACAAAAAC
ACATAAGCACGAGACAGACATTCTCTCACACTACTCTTTTGCTTTGCTTC
TTACTTTTCTTTGTTACTCCTTATTCAAATAACTTGGTTTATTGGAGTCT
ATATTTCTTACATTGCTTTCCCGATGGACTTGACACCATAACTTGGTTAC
CTGACTGCCCGTTCGAGAACTTTAAAGAAAGCATCTGTTTTGTTATAACT
TATATGCATTTTATGTTTTCAAGTAATACTTTGAAGTTTGCATTTCCTTA
TTTGGATTTTTATGCATGACTGAGTGTTCTTGTGCATGCATTTCATATGT
GTTGATGTAATTTGTCATATCTTGTTTTAGGTACAAGTTTGGTGATAAAT
GTGTGACAAAAGAGGATGTGAAGAGGGCTTTAGAAGAGCAATATGGTGGT
GAGGAAGAGGTAGTTTATTTTTGGCTGTATCCCAACTGCTATAATTCTCC
TTATTTTAAGGTTACTTAATTCTCAACTGACCGTTTGTTGTTTTCTTTCC
AACGGTTGCCACAGACCAATCCTGACTTCAATAATACTCCTTTCAAATTG
ACAAGACACTCAGATGCATACATGCTTGTGTATGTACGGGACAGTGATAA
GGACAAAGTAATATGTAATGTGGATGAGAAAGACATAGCCGAACATCTGA
GGGTAAAATGCTTGTCTTTACTTCTAGTTAATGGTAGTATAGGTTCTGGA
TTCCAGTGTCAGACTTAA

protein sequence of MDP0000261354

>MDP0000261354 ID=MDP0000261354; Name=MDP0000261354; organism=Malus x domestica; type=polypeptide; length=610bp
MAVMMEAHGEQMTILYTIIQYMILTGKQQQQQEDEEILVPHSDLVEGPQP
MEAQVEPACTVDSQPVEDPPAMKFTWTIENFTRLNTKKHYYSDMFVVGGY
KWRILIFPKGNNVDYLSMYLDAADSRTLPYGWSRCAQFGLAVVNQIHPKY
SIRKDTQHQFNAREGDWGYTSFMLLGDLYDQSRGYLVNDTVVVEAEISVC
KVLDYGSYDSKKETGYVGLKNQGANGYMNSLLRTWYHIPYFRKVVYVISC
CYCKLNMNCSFEFYMQDLNVGVTYQCVHHMPTTEDDMPSGSIPLALQRLF
YKLQYSESSVASKELTKSFGPTHDLFVKHDLPELNRVLIKKLEDKMKGTI
VEGTIQQLFEGHYRNYIECFNVDYKSTWKESFYDLQLDVKGCRDVYASFS
KFLEVKRLEGDNKYHSEELGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMR
DTTVKINDRYEFPLQLDLDRENGKYLSPESDKSVRNLYTLHSVLVHSGGV
HGGHYHAFIRPTLSDQWYKFGDKCVTKEDVKRALEEQYGGEEETNPDFNN
TPFKLTRHSDAYMLVYVRDSDKDKVICNVDEKDIAEHLRVKCLSLLLVNG
SIGSGFQCQT

mRNA from alignment at chr12:4691792..4697609-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000261354 ID=MDP0000261354; Name=MDP0000261354; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr12:4691792..4697609- (Malus x domestica

mRNA from alignment at MDC020973.349:3139..8956-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000261354 ID=MDP0000261354; Name=MDP0000261354; organism=Malus x domestica; type=mRNA; length=5818bp; location=Sequence derived from: MDC020973.349:3139..8956- (Malus x domestica
ATGGCAGTGATGATGGAGGCACATGGTGAACAGATGACGATATTGTACAC
CATCATTCAATACATGATATTGACCGGCAAGGTGAAAAGAATATTGGGGA
AGAAGACGAAAACCCACATATGCTTTTGATTTTTGATTTTTGATTTATTT
TATATAGAACATGATTGGATTTCCAATAAAATAAAAGTTAGATTTCCAAT
TAAAAAAAAGTTTGATTACGAGTTAAACTCTTAAGTGAGGTTAGGTGAAC
GACCAAATGTTAAATTGGTTCAACTAAAATTATTAAAATATATATATATA
TATATATATATATATATATATATATATATATATTAAGTGAATGACCAAAT
GTTAAATTGGTTCTACTAAAATTATTAAAATATATATATATATATATATA
TATATATATATATATATTTTTTTTTTTTTGAAACTGATGCTGCAAAAAAT
GGTTGATGAGAGGTTTGATTGATGGTATGCATGTAATTTTTTTTTTGAAA
GTTTTGATTATACTAAAACTATACAAACTGAATCTACTAAAAAGTATACA
AACTGATTATACATATATTTGATACTGATAAAAATGGTCGATGGGTTGGA
CTAATGACATGCATGTAATTTTGTTCAAAATATAYAAACTAATTCTGCAA
AAATGGTCGAAGACGGGTKGAACTGATTYTGCAAAAATGGTCGWAGACGG
GTTGAATTGATTCTGCAAAAATTGTCGAAGATGGTYAATTGATTATGCAA
AATGGTGGAGAGTAAGTTGAATTGATTCTACAAAAATGGTGGAGAGCGGG
TTAAGCTGATTGTGCAAAAATGGTCGAATAYGGRTTGAACTGATTYTGTA
AAAATGGTGGATGACGAGTTGAACTAATTCAGYAACAAAGGTCGATGACT
GATTGAACTGATTCTGMAAGAATGGTCAGGACAACTTGAACTAATTTTGC
CAAAATGATGTAGGACGTGATAAACTAATTCTGTATAAATGGTCGAAGAC
GAGTTGAACTGATTCTGCAAAAATAGTGGAGGACGGTTGAATTGATTCTA
CAAAAATAGTAGAATACRGGTTGAACTAATTTTGCAAGAATGATCGAGGA
CGAGTTGAACTGATTCTGCAAAAATGGTTGAAGACGRRTTAAATTAATTC
TGCAAAAATGRTTGAGAACTGATTGAAYTGATTCTACAAAAATRATTGRS
GACAAAWTGAATTTATTCTAATAATAAAAGATACAAAMYGAATCTACATA
TAACTTCAAAACTGATTCTACAAAGTTAGGTGGGAAAGATGGTGCAAAAG
AAACTCCTTTTYGCAGTGCTWATTCTTTRCCATCGGTGTCCGAGTTTGAT
AAAGAATACGCACTGGGAAAAGGAATTTCCTTTTTCTTCACGACGGAACT
ACTTGCCCTACAAGTTTCCCTCATTCAATGAAGGGGTGGTCCCTCAAGTC
TCAACGTGGCAACTTACACCAGAGCAAATTAGAGGGTTCACTTGGCCYTC
TTAAAACTGAGTATGAYTGATATTTTAAAACATTATTTTTATGTTTTTGG
TCTGGACTTGAATTSTTTTTATGTTTTTGTGCCTYTTTWAAAAAATTAGT
ACAGTTCCTTAAAATATAGTAAAWKTTTTTATCTTTATATATAAAAACTC
CTYTCAAATTRWGAATTTTCATCTAACTCTTTGTCATCTCATATTTTTTT
TGCACGAAGWTTCGTAAGRTAAACACRAGAATTATGCAAAAACATAAAAA
TGGCAAATAGTACAAAAAGAGTCTTATTTTGAGGGAGTTTTTCATAACAG
TTCTCTCTGTGCGGAATTACATCTATAATTTTATATTGTGATAAAGACTG
AATCGCTTTTCACGCTTTTTTGATTCAGAAAGAAAATTTTGTTAATTAAT
TTAGATACCTTTCCGCACTGAGTGCTGGATTGTATGAAAGAAAACTAATG
AAAAGGCTTGAAAACTTTTGAGTTTTAATGATAAGGACAAAATAAAGGGT
AAAGTGAATAGTACCAGGATTGACTTTTTAGTGTAAAAATGTGGTTTTTC
GTTAAAGTGAACAGTAACAGGTGCTTTTCGTTAAAATTCCCTTGAATGAA
AGTAGGAGAATCCAGTCCATCACCCACTTGAACAAAAGCTTGATTACCAG
TGTACGAGGAAAGATCACATGCCGTCATTTGCCTGTTAAAAGTAACGCAC
GCGACCCTCTGGTTAGGTTTTTCTTGATCAGAGCTCTGATTTTTGCTTAT
TTTGTTAGCAGCAGCAGCAGCAAGAGGACGAAGAGATACTTGTGCCGCAC
TCGGATTTGGTCGAAGGCCCTCAGCCTATGGAAGGTTTAATTTTTAGCAA
TTTTTCGATGATTTGCTGTTTGAATTTCTTAAGTTTGTGTTTACGGTGTT
GCCTAATCTGAAAGAATTGATTTTTGTGCGAATTTGGCGTCACGAGGTTT
GATTAGAGGGCAAGTGATTGCATTTTCTTTAGTGTGGTGGTTTTGTTGTT
TTGAAATTTATGGTATTTGGTGTGTTGCTAGTAGCCCAAGTGGAGCCGGC
TTGTACAGTTGATAGTCAGCCAGTGGAGGATCCTCCAGCGATGAAATTCA
CTTGGACAATTGAGAACTTTACTAGGTTGAACACCAAGAAGCACTACTAC
TCTGACATGTTCGTTGTTGGCGGCTATAAATGGTATTTTCTCTTGTCTAC
CTGATGTCAAAAACTGATTTATGCTGCTTAAGTTTGGCTTATATTTGTAT
CTCGGCGTTTGGATTTTGAATTGCTTTTGGTATGTTTGATCAGGCGGATA
CTAATATTTCCCAAGGGAAACAATGTGGACTACTTGTCAATGTATTTGGA
TGCGGCAGATTCCAGGACATTGCCATATGGGTGGAGTAGGTGTGCGCAGT
TCGGCTTGGCAGTAGTTAATCAGATCCATCCCAAGTACTCAATAAGAAAG
GGTATATTTCTCTATTAGTCTTATTTCCTTTTAGCATTCAATTTTGTGCT
TTATGACCAGAGTAGTCAAATTTTAAGACCTTTGTCCTTGATTGTTGTAT
GATATTGCAGACACACAACACCAGTTCAATGCAAGAGAAGGTGACTGGGG
ATACACTTCATTCATGCTTCTTGGTGATCTTTATGACCAGAGTAGGGGAT
ATCTGGTGAACGATACAGTTGTGGTTGAAGCTGAGATTTCTGTCTGTAAG
GTTCTTGATTATGGGTCATATGACTCGAAAAAGGAAACTGGTTATGTTGG
GCTCAAGAATCAGGGAGCAAATGGTTATATGAATTCTCTACTCCGGACTT
GGTACCATATACCATACTTCAGAAAGGTTGTTTACGTGATCTCCTGTTGT
TACTGTAAGCTAAACATGAATTGTTCTTTTGAATTTTATATGCAAGATCT
TAATGTTGGAGTTACTTACCAGTGTGTGCATCATATGCCGACAACTGAGG
ATGACATGCCTTCAGGAAGCATCCCTTTGGCACTACAACGTTTATTCTAT
AAACTTCAATACAGTGAAAGCAGTGTTGCAAGTAAAGAATTGACCAAGTC
TTTTGGTCCCACACATGATTTGTTTGTGAAACATGACCTGCCGGAACTTA
ATAGAGTTCTTATCAAAAAGCTTGAAGATAAAATGAAGGTATGGGAATGT
TTCAGTTTTTTCCATGAGTATAGTTTGTGTTTCATTTTCATTCTGATAAT
TGTTCTGTGGGTCCAGGGAACTATTGTGGAGGGTACAATACAACAGTTAT
TTGAAGGACATTACAGGAATTACATTGAATGCTTCAATGTGGACTACAAA
TCTACATGGAAAGAATCATTTTATGGTAATATTTTCTTGCACAATTTAAA
GTGTTAAGAGTGTGAAGTAGTTTGTGAATGTCAACACATGCCGCTGGTTT
CTTCTTATTTCTTTGCAGACCTCCAGCTTGATGTGAAAGGCTGTCGGGAT
GTTTATGCTTCTTTTAGTAAGTTTTTGGAAGTTAAACGTCTTGAGGGTGA
CAACAAATACCACTCCGAAGAACTAGGTTTGCAGGTTAATTACCAAATTC
CATTGGTGACTGCATTTATACTGTGATTCTAATCTGAGGCTGCTATTAGT
TGTTTCCTTCCACAAACCACTTTATAAAACTAGTGGTCTTGCATTATTTC
CTCTTCCACTTAGATTTTTAACATATGGTTCTCACAACGTTATATTTTAA
GTTCTGATTGGATGCCGTCCTTAGTTTTGTCTTTTTATTAAATCACTTGC
TGACGCCAGTATTCTTACATATATTTCTTTGATATTAAAAATTTAAAATA
TTGTTCTCAAGGAATATTTTGGATGTTTATTCCAGGATGCTAAGAAGGGT
GTCCTGTTTATCGACTTCCCTCCCGTTCTTCAACTTCAGCTAAAGCGATT
TGAATATGATTTTATGCGGGACACTACGGTTAAGGTTTGTACTGGAAGCT
CATCTTCCTCCTGCTGCGTGTTTTATTACATGAAACATTGAAAGTGTAAT
GCTTTACTACAAAGCTTCTTAGTTGAAAACAAAACTGTAGCATGTAAATA
TTAATGGAAAGCAAATAAACTATCATGGTAAGAATGTTGTATTATTTTTT
TTTTTTGGCAGATAAATGATCGCTATGAATTTCCTCTTCAACTTGACCTT
GATAGGGAGAATGGAAAATATCTATCACCTGAATCAGATAAGAGTGTTCG
CAACCTCTACACTCTTCATAGGTATCTATTTTGCCTTGCACTATTGCACG
ATATAATATGGTTCATCTGTTTCCTAAATTTGGCATGTTATTTCAATGAA
TATTACTTTCTAGACCTTTGTATGCACTCTGTGCTTGGCAATATCTGAAG
ACGGTTATTCGAACCTGCTTTTTCATCTGCCTGTTTGGTGCTCTTCATGT
TGTGTGGAGCTTMAAATTTTTACGTTGTAATTGGTTACTTACTATGATAA
TTTTCTACTGTTGCAGTGTCTTGGTTCATAGTGGTGGGGTTCATGGTGGA
CATTACCATGCTTTCATCAGACCAACCCTTTCAGACCAGTGGTACGGATC
TCCTGGAATCGATTCTCTCTGTAATTGTTTCCAGTCTCACACACAAAAAC
ACATAAGCACGAGACAGACATTCTCTCACACTACTCTTTTGCTTTGCTTC
TTACTTTTCTTTGTTACTCCTTATTCAAATAACTTGGTTTATTGGAGTCT
ATATTTCTTACATTGCTTTCCCGATGGACTTGACACCATAACTTGGTTAC
CTGACTGCCCGTTCGAGAACTTTAAAGAAAGCATCTGTTTTGTTATAACT
TATATGCATTTTATGTTTTCAAGTAATACTTTGAAGTTTGCATTTCCTTA
TTTGGATTTTTATGCATGACTGAGTGTTCTTGTGCATGCATTTCATATGT
GTTGATGTAATTTGTCATATCTTGTTTTAGGTACAAGTTTGGTGATAAAT
GTGTGACAAAAGAGGATGTGAAGAGGGCTTTAGAAGAGCAATATGGTGGT
GAGGAAGAGGTAGTTTATTTTTGGCTGTATCCCAACTGCTATAATTCTCC
TTATTTTAAGGTTACTTAATTCTCAACTGACCGTTTGTTGTTTTCTTTCC
AACGGTTGCCACAGACCAATCCTGACTTCAATAATACTCCTTTCAAATTG
ACAAGACACTCAGATGCATACATGCTTGTGTATGTACGGGACAGTGATAA
GGACAAAGTAATATGTAATGTGGATGAGAAAGACATAGCCGAACATCTGA
GGGTAAAATGCTTGTCTTTACTTCTAGTTAATGGTAGTATAGGTTCTGGA
TTCCAGTGTCAGACTTAA

Coding sequence (CDS) from alignment at MDC020973.349:3139..8956-

>MDP0000261354 ID=MDP0000261354; Name=MDP0000261354; organism=Malus x domestica; type=CDS; length=1833bp; location=Sequence derived from: MDC020973.349:3139..8956- (Malus x domestica
ATGGCAGTGATGATGGAGGCACATGGTGAACAGATGACGATATTGTACAC
CATCATTCAATACATGATATTGACCGGCAAGCAGCAGCAGCAGCAAGAGG
ACGAAGAGATACTTGTGCCGCACTCGGATTTGGTCGAAGGCCCTCAGCCT
ATGGAAGCCCAAGTGGAGCCGGCTTGTACAGTTGATAGTCAGCCAGTGGA
GGATCCTCCAGCGATGAAATTCACTTGGACAATTGAGAACTTTACTAGGT
TGAACACCAAGAAGCACTACTACTCTGACATGTTCGTTGTTGGCGGCTAT
AAATGGCGGATACTAATATTTCCCAAGGGAAACAATGTGGACTACTTGTC
AATGTATTTGGATGCGGCAGATTCCAGGACATTGCCATATGGGTGGAGTA
GGTGTGCGCAGTTCGGCTTGGCAGTAGTTAATCAGATCCATCCCAAGTAC
TCAATAAGAAAGGACACACAACACCAGTTCAATGCAAGAGAAGGTGACTG
GGGATACACTTCATTCATGCTTCTTGGTGATCTTTATGACCAGAGTAGGG
GATATCTGGTGAACGATACAGTTGTGGTTGAAGCTGAGATTTCTGTCTGT
AAGGTTCTTGATTATGGGTCATATGACTCGAAAAAGGAAACTGGTTATGT
TGGGCTCAAGAATCAGGGAGCAAATGGTTATATGAATTCTCTACTCCGGA
CTTGGTACCATATACCATACTTCAGAAAGGTTGTTTACGTGATCTCCTGT
TGTTACTGTAAGCTAAACATGAATTGTTCTTTTGAATTTTATATGCAAGA
TCTTAATGTTGGAGTTACTTACCAGTGTGTGCATCATATGCCGACAACTG
AGGATGACATGCCTTCAGGAAGCATCCCTTTGGCACTACAACGTTTATTC
TATAAACTTCAATACAGTGAAAGCAGTGTTGCAAGTAAAGAATTGACCAA
GTCTTTTGGTCCCACACATGATTTGTTTGTGAAACATGACCTGCCGGAAC
TTAATAGAGTTCTTATCAAAAAGCTTGAAGATAAAATGAAGGGAACTATT
GTGGAGGGTACAATACAACAGTTATTTGAAGGACATTACAGGAATTACAT
TGAATGCTTCAATGTGGACTACAAATCTACATGGAAAGAATCATTTTATG
ACCTCCAGCTTGATGTGAAAGGCTGTCGGGATGTTTATGCTTCTTTTAGT
AAGTTTTTGGAAGTTAAACGTCTTGAGGGTGACAACAAATACCACTCCGA
AGAACTAGGTTTGCAGGATGCTAAGAAGGGTGTCCTGTTTATCGACTTCC
CTCCCGTTCTTCAACTTCAGCTAAAGCGATTTGAATATGATTTTATGCGG
GACACTACGGTTAAGATAAATGATCGCTATGAATTTCCTCTTCAACTTGA
CCTTGATAGGGAGAATGGAAAATATCTATCACCTGAATCAGATAAGAGTG
TTCGCAACCTCTACACTCTTCATAGTGTCTTGGTTCATAGTGGTGGGGTT
CATGGTGGACATTACCATGCTTTCATCAGACCAACCCTTTCAGACCAGTG
GTACAAGTTTGGTGATAAATGTGTGACAAAAGAGGATGTGAAGAGGGCTT
TAGAAGAGCAATATGGTGGTGAGGAAGAGACCAATCCTGACTTCAATAAT
ACTCCTTTCAAATTGACAAGACACTCAGATGCATACATGCTTGTGTATGT
ACGGGACAGTGATAAGGACAAAGTAATATGTAATGTGGATGAGAAAGACA
TAGCCGAACATCTGAGGGTAAAATGCTTGTCTTTACTTCTAGTTAATGGT
AGTATAGGTTCTGGATTCCAGTGTCAGACTTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001394	Peptidase_C19_UCH
IPR002083	MATH/TRAF_dom
IPR008974	TRAF-like
IPR013322	TRAF-type
IPR018200	USP_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0004221	obsolete ubiquitin thiolesterase activity
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process