MDP0000262252, MDP0000262252 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000262252
Unique NameMDP0000262252
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length2385
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000262252_exon_1MDP0000262252_exon_1Malus x domesticaCDS
MDP0000262252_exon_2MDP0000262252_exon_2Malus x domesticaCDS
MDP0000262252_exon_3MDP0000262252_exon_3Malus x domesticaCDS
MDP0000262252_exon_4MDP0000262252_exon_4Malus x domesticaCDS
MDP0000262252_exon_5MDP0000262252_exon_5Malus x domesticaCDS
MDP0000262252_exon_6MDP0000262252_exon_6Malus x domesticaCDS
MDP0000262252_exon_7MDP0000262252_exon_7Malus x domesticaCDS
MDP0000262252_exon_8MDP0000262252_exon_8Malus x domesticaCDS
MDP0000262252_exon_9MDP0000262252_exon_9Malus x domesticaCDS
MDP0000262252_exon_10MDP0000262252_exon_10Malus x domesticaCDS
MDP0000262252_exon_11MDP0000262252_exon_11Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000262252MDP0000262252Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003337Trehalose-phosphatasePFAMPF02358Trehalose_PPasecoord: 124..377
score: 6.8
IPR003337Trehalose-phosphataseTIGRFAMsTIGR00685T6PP: trehalose-phosphatasecoord: 119..389
score: 2.1
IPR023214HAD-like domainGENE3D3.40.50.1000no descriptioncoord: 280..396
score: 2
IPR023214HAD-like domainSUPERFAMILY56784HAD-likecoord: 121..395
score: 2.3
NoneNo IPR availablePANTHERPTHR10788TREHALOSE-6-PHOSPHATE SYNTHASEcoord: 64..392
score: 1.6e

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000262252 ID=MDP0000262252; Name=MDP0000262252; organism=Malus x domestica; type=mRNA; length=2385bp
ATGACCAACCAAAATGTGGTTGTTTCTGATGCCAAAGGCGTGGCTATTAC
AGTCACGGTTGCTGCAAAGCAGAATATGTTTTCACAATCGGTGCCAAAAC
CGATAACTGAGGCAGGAAGAGGAGGAGGATGCTTCACCATTCCCATGAAC
ATCAAGGTTTTGAATGTTGACACAGAAGGRGGAGCAGCCCGAGTCAATGC
TTGGGTTGACTCCTTGAGAGCTTCTTCTCCGCCTCGTGTCAAATCCGCTG
CCACTCCTCAGTCTCTTTCTGAAACCGTGGATAATAACTCTTGGAGTGTA
AGCATTGCCCTAAACAATAACTTAAATCAATCATTATGGGTGTTTTAATA
TTAAATTTAGAGTAATTTTTTTTTTTCGGGTTAAATATATAGAGTCGCCA
TCCATCAGCTATGAGYATGTTCGAGCAGATAACAAATGCTTCGAAGGGCA
AGCAGATTGTAATGTTTCTTGACTACGATGGCACCCTCTCCCCAATTGTG
GAAGACCCAGATCGTGCTTTCATGTCCAATGAGGTTTATTCTTTCTCATA
TCTAATTCTGCTCAACTTTCTTCAGAAAATACATATTTATACAGTACACC
RTATCCATATATACGTATATGTATGTGTATATGCSTTTCTTAGATTCTGA
ATTACTATGGTAATTTTGGTCAGATGAGAAGGGCAGTGAAGGCCGCTGCT
GGATACTTTCCTACAGCAATAGTTAGCGGGAGGTGCAGGGACAAGGTACA
GTTTTTCTTTCWATACAAAGAAATATAAATAGTGGTAATTTTGTTTCTTT
TTGTTTTTCTTCTTCTACTTCATGATTAGTGGAATTATATAAATAGTGGT
AATTTTGTTTCTGATAAATTTGCAGGTTTACAGCTTTGTAAAATTAGGAG
AGCTTTWTTATGCAGGCAGCCATGGGATGGACATCAAGGGACCATCCAAA
AGTAGCAAATATAAGAATGTGAGCTCTAGTGTGATACCACAATAAAAAGT
TCTTTATCTTTGTATTATTTCATTACTGTATCACTTTTTGTTATGACTTA
TATAATATTTTGCATGGTTGGATTATTTAGGGTAATCAAGCAGTTCTCTT
CCAACCGGCCAGTGAGTTTGTACCAATGATTGATGAGGTTAGTTCACTGA
TATCAATTTTAAGAGCAAGAAAATTGAGAATATTCAAAAGTGTGTTGGGA
GGACTAATTAAATTTGTGTAAATCTTTTAATAGGTGTACAAAATTTTATT
GGAGAAAACCAGATCCATCTCAGGAGCTAGGGTGGAAGATAATAAGTTTT
GTTTATCTGTACACTTCCGTTGTGTTGATGAGAAGGTAAGCAAACAAGTC
CCACCTATTAGTTTTCATTTWTTTTTCTTAATTTTATCATGTTTTAGTCA
TGTAATCGGATAAATAACACAATTTTTTAGARTAACAATTATTTTTTTCT
TTTGTATTTTTGTTAATTTGGCAGAGTTGGGCAGCTTTAGCAGAGCAAGT
TAGACTTGTTCTCAATGAGTATCCGAAGCTCAGGTTGACTCAAGGGAGGA
AGGTAACTCATCATGTCAATATCYTTAAAATTTTCAGTGAATTTTTTGCA
TGGCMATGGTTATATTTTGTACATTAGCAACTGCATGCCTAACAGTGGTA
TGCGGTTTTAAACAGGTATTAGAGATCCGCCCAACCATCAAATGGGACAA
AGGCAAAGCTCTWGAATTCCTGCTAGAGTCATTAGGTGAGTCTTGGAGTC
AAATATTTTCTTCTAAAGTCTATGATTTGTATTTGAAGAAATGTTACCGT
GAGTCAGTCTGAATGKTGCAATTCCTAAAAKAGAACTCACATTAATTAAT
GTTCACAAGTATCTATGCACGTGTCAGGGAYTATTCCTGATTAACAAAAT
CATATATGTTAGTTAAATAATTTTTCTGAAGATGTTGAATTATTGTATCT
TTAGGATATGCGAACTCAAACGAAGTACTACCAGTCTATATTGGAGATGA
TCGAACAGACGAGGACGCCTTCAAGGTATGAAATGCCCTCCCTACATTTC
TTTAATTTGCTAAMAGTATCGATATTTTCTTACAAGTCTTTGACATATTT
TCACATCCTAAAAATGATCAGGTGCTACGCGATAGAGGACAAGGATTTGG
TATTCTGGTTTCTAAAGTTCCAAAAGAAACAAATGCGTCTTACACTTTAC
AAGAACCAGCAGAGGTAAGAACAATATTATTCAATGGAATTTATGCTATT
CGATATATATATATATATCTTATATTTTCTTTGGTTTTAACCATAAAGTT
TCATATTATTGCATTACTTTTACAGGTTAAGGATTTTTTGCGGCGTTTGG
TGAAATGGAAAAGATGGTCAAACCAGCAAAAGTAA
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protein sequence of MDP0000262252

>MDP0000262252 ID=MDP0000262252; Name=MDP0000262252; organism=Malus x domestica; type=polypeptide; length=398bp
MTNQNVVVSDAKGVAITVTVAAKQNMFSQSVPKPITEAGRGGGCFTIPMN
IKVLNVDTEGGAARVNAWVDSLRASSPPRVKSAATPQSLSETVDNNSWSS
RHPSAMSMFEQITNASKGKQIVMFLDYDGTLSPIVEDPDRAFMSNEMRRA
VKAAAGYFPTAIVSGRCRDKVYSFVKLGELXYAGSHGMDIKGPSKSSKYK
NGNQAVLFQPASEFVPMIDEVYKILLEKTRSISGARVEDNKFCLSVHFRC
VDEKSWAALAEQVRLVLNEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLL
ESLGESWSQIFSSKVYDLYLKKCYRYANSNEVLPVYIGDDRTDEDAFKVL
RDRGQGFGILVSKVPKETNASYTLQEPAEVKDFLRRLVKWKRWSNQQK
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mRNA from alignment at chr1:4986740..4989124-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000262252 ID=MDP0000262252; Name=MDP0000262252; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr1:4986740..4989124- (Malus x domestica
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mRNA from alignment at MDC023010.45:4225..6609-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000262252 ID=MDP0000262252; Name=MDP0000262252; organism=Malus x domestica; type=mRNA; length=2385bp; location=Sequence derived from: MDC023010.45:4225..6609- (Malus x domestica
ATGACCAACCAAAATGTGGTTGTTTCTGATGCCAAAGGCGTGGCTATTAC
AGTCACGGTTGCTGCAAAGCAGAATATGTTTTCACAATCGGTGCCAAAAC
CGATAACTGAGGCAGGAAGAGGAGGAGGATGCTTCACCATTCCCATGAAC
ATCAAGGTTTTGAATGTTGACACAGAAGGRGGAGCAGCCCGAGTCAATGC
TTGGGTTGACTCCTTGAGAGCTTCTTCTCCGCCTCGTGTCAAATCCGCTG
CCACTCCTCAGTCTCTTTCTGAAACCGTGGATAATAACTCTTGGAGTGTA
AGCATTGCCCTAAACAATAACTTAAATCAATCATTATGGGTGTTTTAATA
TTAAATTTAGAGTAATTTTTTTTTTTCGGGTTAAATATATAGAGTCGCCA
TCCATCAGCTATGAGYATGTTCGAGCAGATAACAAATGCTTCGAAGGGCA
AGCAGATTGTAATGTTTCTTGACTACGATGGCACCCTCTCCCCAATTGTG
GAAGACCCAGATCGTGCTTTCATGTCCAATGAGGTTTATTCTTTCTCATA
TCTAATTCTGCTCAACTTTCTTCAGAAAATACATATTTATACAGTACACC
RTATCCATATATACGTATATGTATGTGTATATGCSTTTCTTAGATTCTGA
ATTACTATGGTAATTTTGGTCAGATGAGAAGGGCAGTGAAGGCCGCTGCT
GGATACTTTCCTACAGCAATAGTTAGCGGGAGGTGCAGGGACAAGGTACA
GTTTTTCTTTCWATACAAAGAAATATAAATAGTGGTAATTTTGTTTCTTT
TTGTTTTTCTTCTTCTACTTCATGATTAGTGGAATTATATAAATAGTGGT
AATTTTGTTTCTGATAAATTTGCAGGTTTACAGCTTTGTAAAATTAGGAG
AGCTTTWTTATGCAGGCAGCCATGGGATGGACATCAAGGGACCATCCAAA
AGTAGCAAATATAAGAATGTGAGCTCTAGTGTGATACCACAATAAAAAGT
TCTTTATCTTTGTATTATTTCATTACTGTATCACTTTTTGTTATGACTTA
TATAATATTTTGCATGGTTGGATTATTTAGGGTAATCAAGCAGTTCTCTT
CCAACCGGCCAGTGAGTTTGTACCAATGATTGATGAGGTTAGTTCACTGA
TATCAATTTTAAGAGCAAGAAAATTGAGAATATTCAAAAGTGTGTTGGGA
GGACTAATTAAATTTGTGTAAATCTTTTAATAGGTGTACAAAATTTTATT
GGAGAAAACCAGATCCATCTCAGGAGCTAGGGTGGAAGATAATAAGTTTT
GTTTATCTGTACACTTCCGTTGTGTTGATGAGAAGGTAAGCAAACAAGTC
CCACCTATTAGTTTTCATTTWTTTTTCTTAATTTTATCATGTTTTAGTCA
TGTAATCGGATAAATAACACAATTTTTTAGARTAACAATTATTTTTTTCT
TTTGTATTTTTGTTAATTTGGCAGAGTTGGGCAGCTTTAGCAGAGCAAGT
TAGACTTGTTCTCAATGAGTATCCGAAGCTCAGGTTGACTCAAGGGAGGA
AGGTAACTCATCATGTCAATATCYTTAAAATTTTCAGTGAATTTTTTGCA
TGGCMATGGTTATATTTTGTACATTAGCAACTGCATGCCTAACAGTGGTA
TGCGGTTTTAAACAGGTATTAGAGATCCGCCCAACCATCAAATGGGACAA
AGGCAAAGCTCTWGAATTCCTGCTAGAGTCATTAGGTGAGTCTTGGAGTC
AAATATTTTCTTCTAAAGTCTATGATTTGTATTTGAAGAAATGTTACCGT
GAGTCAGTCTGAATGKTGCAATTCCTAAAAKAGAACTCACATTAATTAAT
GTTCACAAGTATCTATGCACGTGTCAGGGAYTATTCCTGATTAACAAAAT
CATATATGTTAGTTAAATAATTTTTCTGAAGATGTTGAATTATTGTATCT
TTAGGATATGCGAACTCAAACGAAGTACTACCAGTCTATATTGGAGATGA
TCGAACAGACGAGGACGCCTTCAAGGTATGAAATGCCCTCCCTACATTTC
TTTAATTTGCTAAMAGTATCGATATTTTCTTACAAGTCTTTGACATATTT
TCACATCCTAAAAATGATCAGGTGCTACGCGATAGAGGACAAGGATTTGG
TATTCTGGTTTCTAAAGTTCCAAAAGAAACAAATGCGTCTTACACTTTAC
AAGAACCAGCAGAGGTAAGAACAATATTATTCAATGGAATTTATGCTATT
CGATATATATATATATATCTTATATTTTCTTTGGTTTTAACCATAAAGTT
TCATATTATTGCATTACTTTTACAGGTTAAGGATTTTTTGCGGCGTTTGG
TGAAATGGAAAAGATGGTCAAACCAGCAAAAGTAA
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Coding sequence (CDS) from alignment at MDC023010.45:4225..6609-

>MDP0000262252 ID=MDP0000262252; Name=MDP0000262252; organism=Malus x domestica; type=CDS; length=1197bp; location=Sequence derived from: MDC023010.45:4225..6609- (Malus x domestica
ATGACCAACCAAAATGTGGTTGTTTCTGATGCCAAAGGCGTGGCTATTAC
AGTCACGGTTGCTGCAAAGCAGAATATGTTTTCACAATCGGTGCCAAAAC
CGATAACTGAGGCAGGAAGAGGAGGAGGATGCTTCACCATTCCCATGAAC
ATCAAGGTTTTGAATGTTGACACAGAAGGRGGAGCAGCCCGAGTCAATGC
TTGGGTTGACTCCTTGAGAGCTTCTTCTCCGCCTCGTGTCAAATCCGCTG
CCACTCCTCAGTCTCTTTCTGAAACCGTGGATAATAACTCTTGGAGTAGT
CGCCATCCATCAGCTATGAGYATGTTCGAGCAGATAACAAATGCTTCGAA
GGGCAAGCAGATTGTAATGTTTCTTGACTACGATGGCACCCTCTCCCCAA
TTGTGGAAGACCCAGATCGTGCTTTCATGTCCAATGAGATGAGAAGGGCA
GTGAAGGCCGCTGCTGGATACTTTCCTACAGCAATAGTTAGCGGGAGGTG
CAGGGACAAGGTTTACAGCTTTGTAAAATTAGGAGAGCTTTWTTATGCAG
GCAGCCATGGGATGGACATCAAGGGACCATCCAAAAGTAGCAAATATAAG
AATGGTAATCAAGCAGTTCTCTTCCAACCGGCCAGTGAGTTTGTACCAAT
GATTGATGAGGTGTACAAAATTTTATTGGAGAAAACCAGATCCATCTCAG
GAGCTAGGGTGGAAGATAATAAGTTTTGTTTATCTGTACACTTCCGTTGT
GTTGATGAGAAGAGTTGGGCAGCTTTAGCAGAGCAAGTTAGACTTGTTCT
CAATGAGTATCCGAAGCTCAGGTTGACTCAAGGGAGGAAGGTATTAGAGA
TCCGCCCAACCATCAAATGGGACAAAGGCAAAGCTCTWGAATTCCTGCTA
GAGTCATTAGGTGAGTCTTGGAGTCAAATATTTTCTTCTAAAGTCTATGA
TTTGTATTTGAAGAAATGTTACCGATATGCGAACTCAAACGAAGTACTAC
CAGTCTATATTGGAGATGATCGAACAGACGAGGACGCCTTCAAGGTGCTA
CGCGATAGAGGACAAGGATTTGGTATTCTGGTTTCTAAAGTTCCAAAAGA
AACAAATGCGTCTTACACTTTACAAGAACCAGCAGAGGTTAAGGATTTTT
TGCGGCGTTTGGTGAAATGGAAAAGATGGTCAAACCAGCAAAAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003337Trehalose_PPase
IPR023214HAD_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0005992trehalose biosynthetic process