MDP0000267129, MDP0000267129 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000267129
Unique NameMDP0000267129
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length2223
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000267129_exon_1MDP0000267129_exon_1Malus x domesticaCDS
MDP0000267129_exon_2MDP0000267129_exon_2Malus x domesticaCDS
MDP0000267129_exon_3MDP0000267129_exon_3Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000267129MDP0000267129Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 290..585
score: 6.1e
IPR006501Pectinesterase inhibitorGENE3D1.20.140.40no descriptioncoord: 94..242
score: 1.8
IPR006501Pectinesterase inhibitorPFAMPF04043PMEIcoord: 94..238
score: 1
IPR006501Pectinesterase inhibitorSMARTSM00856Plant invertase/pectin methylesterase inhibicoord: 92..238
score: 6.1
IPR006501Pectinesterase inhibitorTIGRFAMsTIGR01614PME_inhib: pectinesterase inhibitor domaincoord: 90..239
score: 8.7
IPR006501Pectinesterase inhibitorSUPERFAMILY101148Plant invertase/pectin methylesterase inhibitorcoord: 94..245
score: 4.6
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 283..600
score: 2.2e
IPR012334Pectin lyase foldGENE3D2.160.20.10no descriptioncoord: 286..595
score: 1.5e
IPR018040Pectinesterase, active sitePROSITEPS00503PECTINESTERASE_2coord: 434..443
score
NoneNo IPR availablePANTHERPTHR22931FAMILY NOT NAMEDcoord: 95..538
score: 7.5
NoneNo IPR availablePANTHERPTHR22931:SF5METHYLESTERASE INHIBITOR-RELATEDcoord: 95..538
score: 7.5
NoneNo IPR availableSEGsegsegcoord: 25..40
score: NAcoord: 47..86
score: NAcoord: 395..406
score
NoneNo IPR availableSEGsegsegcoord: 32..46
score
NoneNo IPR availableSEGsegsegcoord: 98..112
score
NoneNo IPR availableSEGsegsegcoord: 52..64
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000267129 ID=MDP0000267129; Name=MDP0000267129; organism=Malus x domestica; type=mRNA; length=2223bp
ATGGCATTTCAGGATTTCGACCAGCTTACCGAACGCCGAAAGACCGAGAA
TGCACGTAAGTTCAAGAAGAGAATTATCATTGCGGTCGTCGTCATTCTCC
TCCTTGTTCTGATTGCCGTCGGAGCCTATTTCATTGTCAACAAACTTAAT
AATAAAGGTACTAAGAAGGGCAATGCAAAGGAGGGCAATGCTAAACAAGG
CAAAGCCGCAGGGAAACCTGCACCGAAGGCTCCTCAACCGAAAAATGGAC
CACCGAAGAGCAAAACGCCTTCGAATGGTCAGAAGATCCTGAAGGAGATG
TGCAGCGCTGCAGATTACAAGGAAAAATGCGAGGGCATCATTGAAAAGGC
AAGGGACGAAACAAAACCCAAGGCATTCATCAAGACCGCTATCTCAGCCG
CCTCGGACGAGGCCAAGAGTGCCTACAGCAAAACTGCCGAGCTGACTTTC
AACAGTCCGGAAGAGAAGGGAGCGTTTGAGGATTGCAAAGTGTTGTTCGA
CGATGCCAAGGGGGAATTAGGGGACGCCGTTTCTCAGCTTGGCAACAGCA
TTGAGTCGGGGAAGGTTCGCACAGGCGTCTTGAACAGCTGGTTGAGTGCG
GTGATATCTTACCAGCAGACATGCGTCGACGGGTTTCCTGATGGAAAATT
GAAGTCCGACTTGGAGAAGATGTTGCAGGCCTCTAAGGAATTCACTAGCA
ACTCCCTGGCCATGCTTTCACTCTTTAACCAGTTGCAGCTACCGGGTGCA
GAAGCAGCTACAGGATCCAATCGCCGCCTTCTATCGCAGGACAAGAGCGG
ATTCCCTACCTGGATGAGTCACGAGGACCGAAGGATGTTGAAGAAAAACG
ATGAAAAGCTCACCCCCAACGTGACGGTGGCAAAAGATGGTAGTGGAAAC
TACAAAACCATTAGTGAAGCCTTGGAAAAAATACCCGAAAAATACGAAGG
CCGGTATGTATTGTGTTAAAAAACAATGATTTTCATAATCTTGTTATCTT
TATTTATCAGTTTGCTTTTACCCTTATGAAAATTCAGGTATGTCATCTAT
GTTAAAGAAGGAGTTTATGATGAGACCGTGACTGTGACAAAGAAGATGCC
GAACGTTACAATGTACGGCGATGGGTCACAGAAGAGCGTCGTCACTGGAA
ATAAAAACTTTGCCGATAAAGTTAGGATATTCCAAACTGCACCTTTCGGT
ACGGGCTCAACAAATTTGCACCAAGAAACGATTTCAGCACATCCTTCTCA
TCCTTCTGCACACTCGTGTTTAATTGTGTCCCTTGATTTTCTTTTGATAA
ACCCAAAGGCCGGAGCCATAAATAAACATGGGTGTGTAAGGCGAGAAAAT
GAACGTGTGGAAATCACTCCCTTTTGCATCGCAATACATCTGCTCAAATT
AGACAAGTGATGTATATGTCTTGTAGCAATATAAGATATAGAGCATGTGT
ACGGCCTACCTCACCATTTCAGGCTAGTGTCAATGTTACTTACTCTTGTT
TTTTTTCCTTTTGATTCTATTGCAGCGGTCTTAGGGGAAGGTTTTATGGC
AAAGTCGATGGGATTCAGAAACACGGCTGGACCTGAGAAGCATCAGGCAG
TGGCAGCAAGAGTCCAAGCAGACCGCGCTATTTTTCTGAACTGCCGGTTT
GAAGGGTACCAAAGCACATTATACGCACAAACTCATCGGCAGTTCTATAA
GAGCTGTGTCATTTCAGGCACCGTTGATTTCATCTTTGGCGACGCTGCTG
CCATCTTCCAGAACTGCTTGATCTACGTCCGCAAGCCTTTGGAAAACCAA
CAAAACACTGTCACAGCCCAGGGAAGGACTGACAAACAGGAAACCACAGG
AATAGTGTTGCAGAATTGCAAAATCATGCCGGACAAAGATCTTGAGCCAG
TAAAGTCCCAATTCAAGACCTACCTCGGAAGGCCATCGAAGGAATTCTCG
AGAACCATAGTGATGGATTCGACAATTGAGGACCTGATTCACCCCGATGG
ATGGACACAGTGGGAAGGAGATTTCGCACTAAAAACATTGTATTATGCAG
AATATAACAACAAGGGACCGGGCGCGAAAACTGACAACAGAGTGAAGTGG
GATGGATACAAGAAAATTGACAAGCAAGAGGCAATGCATTATACTGTAGG
GCCTTTCTTGAAGGGGCACGCTTGGCTTATGGGTGTGGGTGTTCCTGCTC
GCTTCGGCCTATTTGAAAGTTAA
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protein sequence of MDP0000267129

>MDP0000267129 ID=MDP0000267129; Name=MDP0000267129; organism=Malus x domestica; type=polypeptide; length=603bp
MAFQDFDQLTERRKTENARKFKKRIIIAVVVILLLVLIAVGAYFIVNKLN
NKGTKKGNAKEGNAKQGKAAGKPAPKAPQPKNGPPKSKTPSNGQKILKEM
CSAADYKEKCEGIIEKARDETKPKAFIKTAISAASDEAKSAYSKTAELTF
NSPEEKGAFEDCKVLFDDAKGELGDAVSQLGNSIESGKVRTGVLNSWLSA
VISYQQTCVDGFPDGKLKSDLEKMLQASKEFTSNSLAMLSLFNQLQLPGA
EAATGSNRRLLSQDKSGFPTWMSHEDRRMLKKNDEKLTPNVTVAKDGSGN
YKTISEALEKIPEKYEGRYVIYVKEGVYDETVTVTKKMPNVTMYGDGSQK
SVVTGNKNFADKVRIFQTAPFAVLGEGFMAKSMGFRNTAGPEKHQAVAAR
VQADRAIFLNCRFEGYQSTLYAQTHRQFYKSCVISGTVDFIFGDAAAIFQ
NCLIYVRKPLENQQNTVTAQGRTDKQETTGIVLQNCKIMPDKDLEPVKSQ
FKTYLGRPSKEFSRTIVMDSTIEDLIHPDGWTQWEGDFALKTLYYAEYNN
KGPGAKTDNRVKWDGYKKIDKQEAMHYTVGPFLKGHAWLMGVGVPARFGL
FES
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mRNA from alignment at chr15:15491017..15493239+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000267129 ID=MDP0000267129; Name=MDP0000267129; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:15491017..15493239+ (Malus x domestica
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mRNA from alignment at MDC001776.406:20943..23165+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000267129 ID=MDP0000267129; Name=MDP0000267129; organism=Malus x domestica; type=mRNA; length=2223bp; location=Sequence derived from: MDC001776.406:20943..23165+ (Malus x domestica
ATGGCATTTCAGGATTTCGACCAGCTTACCGAACGCCGAAAGACCGAGAA
TGCACGTAAGTTCAAGAAGAGAATTATCATTGCGGTCGTCGTCATTCTCC
TCCTTGTTCTGATTGCCGTCGGAGCCTATTTCATTGTCAACAAACTTAAT
AATAAAGGTACTAAGAAGGGCAATGCAAAGGAGGGCAATGCTAAACAAGG
CAAAGCCGCAGGGAAACCTGCACCGAAGGCTCCTCAACCGAAAAATGGAC
CACCGAAGAGCAAAACGCCTTCGAATGGTCAGAAGATCCTGAAGGAGATG
TGCAGCGCTGCAGATTACAAGGAAAAATGCGAGGGCATCATTGAAAAGGC
AAGGGACGAAACAAAACCCAAGGCATTCATCAAGACCGCTATCTCAGCCG
CCTCGGACGAGGCCAAGAGTGCCTACAGCAAAACTGCCGAGCTGACTTTC
AACAGTCCGGAAGAGAAGGGAGCGTTTGAGGATTGCAAAGTGTTGTTCGA
CGATGCCAAGGGGGAATTAGGGGACGCCGTTTCTCAGCTTGGCAACAGCA
TTGAGTCGGGGAAGGTTCGCACAGGCGTCTTGAACAGCTGGTTGAGTGCG
GTGATATCTTACCAGCAGACATGCGTCGACGGGTTTCCTGATGGAAAATT
GAAGTCCGACTTGGAGAAGATGTTGCAGGCCTCTAAGGAATTCACTAGCA
ACTCCCTGGCCATGCTTTCACTCTTTAACCAGTTGCAGCTACCGGGTGCA
GAAGCAGCTACAGGATCCAATCGCCGCCTTCTATCGCAGGACAAGAGCGG
ATTCCCTACCTGGATGAGTCACGAGGACCGAAGGATGTTGAAGAAAAACG
ATGAAAAGCTCACCCCCAACGTGACGGTGGCAAAAGATGGTAGTGGAAAC
TACAAAACCATTAGTGAAGCCTTGGAAAAAATACCCGAAAAATACGAAGG
CCGGTATGTATTGTGTTAAAAAACAATGATTTTCATAATCTTGTTATCTT
TATTTATCAGTTTGCTTTTACCCTTATGAAAATTCAGGTATGTCATCTAT
GTTAAAGAAGGAGTTTATGATGAGACCGTGACTGTGACAAAGAAGATGCC
GAACGTTACAATGTACGGCGATGGGTCACAGAAGAGCGTCGTCACTGGAA
ATAAAAACTTTGCCGATAAAGTTAGGATATTCCAAACTGCACCTTTCGGT
ACGGGCTCAACAAATTTGCACCAAGAAACGATTTCAGCACATCCTTCTCA
TCCTTCTGCACACTCGTGTTTAATTGTGTCCCTTGATTTTCTTTTGATAA
ACCCAAAGGCCGGAGCCATAAATAAACATGGGTGTGTAAGGCGAGAAAAT
GAACGTGTGGAAATCACTCCCTTTTGCATCGCAATACATCTGCTCAAATT
AGACAAGTGATGTATATGTCTTGTAGCAATATAAGATATAGAGCATGTGT
ACGGCCTACCTCACCATTTCAGGCTAGTGTCAATGTTACTTACTCTTGTT
TTTTTTCCTTTTGATTCTATTGCAGCGGTCTTAGGGGAAGGTTTTATGGC
AAAGTCGATGGGATTCAGAAACACGGCTGGACCTGAGAAGCATCAGGCAG
TGGCAGCAAGAGTCCAAGCAGACCGCGCTATTTTTCTGAACTGCCGGTTT
GAAGGGTACCAAAGCACATTATACGCACAAACTCATCGGCAGTTCTATAA
GAGCTGTGTCATTTCAGGCACCGTTGATTTCATCTTTGGCGACGCTGCTG
CCATCTTCCAGAACTGCTTGATCTACGTCCGCAAGCCTTTGGAAAACCAA
CAAAACACTGTCACAGCCCAGGGAAGGACTGACAAACAGGAAACCACAGG
AATAGTGTTGCAGAATTGCAAAATCATGCCGGACAAAGATCTTGAGCCAG
TAAAGTCCCAATTCAAGACCTACCTCGGAAGGCCATCGAAGGAATTCTCG
AGAACCATAGTGATGGATTCGACAATTGAGGACCTGATTCACCCCGATGG
ATGGACACAGTGGGAAGGAGATTTCGCACTAAAAACATTGTATTATGCAG
AATATAACAACAAGGGACCGGGCGCGAAAACTGACAACAGAGTGAAGTGG
GATGGATACAAGAAAATTGACAAGCAAGAGGCAATGCATTATACTGTAGG
GCCTTTCTTGAAGGGGCACGCTTGGCTTATGGGTGTGGGTGTTCCTGCTC
GCTTCGGCCTATTTGAAAGTTAA
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Coding sequence (CDS) from alignment at MDC001776.406:20943..23165+

>MDP0000267129 ID=MDP0000267129; Name=MDP0000267129; organism=Malus x domestica; type=CDS; length=1812bp; location=Sequence derived from: MDC001776.406:20943..23165+ (Malus x domestica
ATGGCATTTCAGGATTTCGACCAGCTTACCGAACGCCGAAAGACCGAGAA
TGCACGTAAGTTCAAGAAGAGAATTATCATTGCGGTCGTCGTCATTCTCC
TCCTTGTTCTGATTGCCGTCGGAGCCTATTTCATTGTCAACAAACTTAAT
AATAAAGGTACTAAGAAGGGCAATGCAAAGGAGGGCAATGCTAAACAAGG
CAAAGCCGCAGGGAAACCTGCACCGAAGGCTCCTCAACCGAAAAATGGAC
CACCGAAGAGCAAAACGCCTTCGAATGGTCAGAAGATCCTGAAGGAGATG
TGCAGCGCTGCAGATTACAAGGAAAAATGCGAGGGCATCATTGAAAAGGC
AAGGGACGAAACAAAACCCAAGGCATTCATCAAGACCGCTATCTCAGCCG
CCTCGGACGAGGCCAAGAGTGCCTACAGCAAAACTGCCGAGCTGACTTTC
AACAGTCCGGAAGAGAAGGGAGCGTTTGAGGATTGCAAAGTGTTGTTCGA
CGATGCCAAGGGGGAATTAGGGGACGCCGTTTCTCAGCTTGGCAACAGCA
TTGAGTCGGGGAAGGTTCGCACAGGCGTCTTGAACAGCTGGTTGAGTGCG
GTGATATCTTACCAGCAGACATGCGTCGACGGGTTTCCTGATGGAAAATT
GAAGTCCGACTTGGAGAAGATGTTGCAGGCCTCTAAGGAATTCACTAGCA
ACTCCCTGGCCATGCTTTCACTCTTTAACCAGTTGCAGCTACCGGGTGCA
GAAGCAGCTACAGGATCCAATCGCCGCCTTCTATCGCAGGACAAGAGCGG
ATTCCCTACCTGGATGAGTCACGAGGACCGAAGGATGTTGAAGAAAAACG
ATGAAAAGCTCACCCCCAACGTGACGGTGGCAAAAGATGGTAGTGGAAAC
TACAAAACCATTAGTGAAGCCTTGGAAAAAATACCCGAAAAATACGAAGG
CCGGTATGTCATCTATGTTAAAGAAGGAGTTTATGATGAGACCGTGACTG
TGACAAAGAAGATGCCGAACGTTACAATGTACGGCGATGGGTCACAGAAG
AGCGTCGTCACTGGAAATAAAAACTTTGCCGATAAAGTTAGGATATTCCA
AACTGCACCTTTCGCGGTCTTAGGGGAAGGTTTTATGGCAAAGTCGATGG
GATTCAGAAACACGGCTGGACCTGAGAAGCATCAGGCAGTGGCAGCAAGA
GTCCAAGCAGACCGCGCTATTTTTCTGAACTGCCGGTTTGAAGGGTACCA
AAGCACATTATACGCACAAACTCATCGGCAGTTCTATAAGAGCTGTGTCA
TTTCAGGCACCGTTGATTTCATCTTTGGCGACGCTGCTGCCATCTTCCAG
AACTGCTTGATCTACGTCCGCAAGCCTTTGGAAAACCAACAAAACACTGT
CACAGCCCAGGGAAGGACTGACAAACAGGAAACCACAGGAATAGTGTTGC
AGAATTGCAAAATCATGCCGGACAAAGATCTTGAGCCAGTAAAGTCCCAA
TTCAAGACCTACCTCGGAAGGCCATCGAAGGAATTCTCGAGAACCATAGT
GATGGATTCGACAATTGAGGACCTGATTCACCCCGATGGATGGACACAGT
GGGAAGGAGATTTCGCACTAAAAACATTGTATTATGCAGAATATAACAAC
AAGGGACCGGGCGCGAAAACTGACAACAGAGTGAAGTGGGATGGATACAA
GAAAATTGACAAGCAAGAGGCAATGCATTATACTGTAGGGCCTTTCTTGA
AGGGGCACGCTTGGCTTATGGGTGTGGGTGTTCCTGCTCGCTTCGGCCTA
TTTGAAAGTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
IPR006501Pectinesterase_inhib_dom
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR018040Pectinesterase_Tyr_AS
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
GO:0004857enzyme inhibitor activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification