MDP0000278119, MDP0000278119 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000278119
Unique Name	MDP0000278119
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1616

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr12	chromosome	chr12:21916544..21918159 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC006993.145	contig	MDC006993.145:9654..11269 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000278119_exon_1	MDP0000278119_exon_1	Malus x domestica	CDS
MDP0000278119_exon_2	MDP0000278119_exon_2	Malus x domestica	CDS
MDP0000278119_exon_3	MDP0000278119_exon_3	Malus x domestica	CDS
MDP0000278119_exon_4	MDP0000278119_exon_4	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000278119	MDP0000278119	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000070	Pectinesterase, catalytic	PFAM	PF01095	Pectinesterase	coord: 42..317 score: 1.7
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 34..333 score: 1.4
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10	no description	coord: 42..330 score: 3.7e
IPR018040	Pectinesterase, active site	PROSITE	PS00800	PECTINESTERASE_1	coord: 66..85 score
None	No IPR available	SEG	seg	seg	coord: 29..43 score
None	No IPR available	SEG	seg	seg	coord: 28..32 score
None	No IPR available	SEG	seg	seg	coord: 40..44 score
None	No IPR available	SEG	seg	seg	coord: 29..49 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:21916544..21918159+
mRNA from alignment at MDC006993.145:9654..11269+
coding sequence from alignment at MDC006993.145:9654..11269+

mRNA sequence

>MDP0000278119 ID=MDP0000278119; Name=MDP0000278119; organism=Malus x domestica; type=mRNA; length=1616bp
ATGGTGGCTGTTTGTGGTACTTCTATGAAGACCAAGTGCTTCTTTGTCAT
GGCTTCATTGTATGTTCTTCTGGCGCTTTCTCAAGCAGAAGCAGAAACAA
CTCAGGGGTCCACGGCAATTCTAATAACCGTGGATCAGTCTGGGAAAGGC
GATTACGAGAAAATACAAGATGCCATCGACGCGGTGCCGTCGAATAACGT
CGATCTTGTGTTCATTAGGGTTAAGCCTGGAGTCTACAAAGAAAAAATTA
CTGTCCCCGCGGACAAACCCTTTATTACAATAAGTGGCACAAAGGCAGTT
GACACTATAATTACGTGGAACGACAGCGGAGATATATTTGAATCTGCAAC
TTTCTCTGTGTTGGCTTCGGATTTTATAGGGCGCTACCTCACAATTCAGG
TACATATATTTATATGTGTGTGTGTGTGTGTACGTATATAGTACGTTTCA
CATGCATGTCCATGCATATATACGCTTGAATCTAATAATTTTAATTGCTG
AATTCATTGCAGAACACTTATGGAAGCGGTGGTAAAGCAGTGGCGCTGAG
GGCCTCAGGGGATAGAGCAGCATTTTATGTGTGCAGAATTTTGTCTTACC
AAGATACCCTACTTGACGATACCGGCAGGCACTACTACAACAACTGTTAT
ATTGAAGGAGCCACTGATTTTATATGTGGAAATGGTGCTTCTTTTTTTGA
GGTAACTTATAGAAGAAAACAATATTGTTAGCGTTTTGGTTTTTGAAAAT
TATTGATTTTATTGTTTCGGTCTAAACCATCACACTATCACGCGTGTTGT
TATCAATATGTTCATGTTGTTATCAATATGTTCATGATACACTTGATCTA
TCTATATATTATAATATGCGGATTAGTAGCTAGTAACATGCATGTGATGT
TAGGACCATCAGCTCAATGATTTCTCGAGGATTAATTAGTATGGTGCTAA
TTCATATGTTTGGGCTTCAATTGATGAATAAATTAATTAAATTTTCCAGA
AGTGCCATTTGCATTCGATTTCGAATGGAGGAGGAGCCATAACAGCCCAA
AGGAGGATGTCACCTTCAGAGGACACTGGGTTCTTTTTCTTTGGGTGCAA
GATCACTGGCGTCAAAACGGCAGTGTTAGGAAGACCATGGGGTGTCTATT
CCAGAGTCATTTTTGCCTTCACTTACATGCCTAATATCATACTCCCTCAG
GGTTGGAACGACTGGGGTAACTCAGCCGACCAATTAAGGTAACTCTAACG
ATAAATTTTATTAGTATTCCACAATTATGACCAGGTGCTCCTCCGTTTAT
ATGATGACTATTTTCCATTGCTAATAATGGCTTCTTTTTTTKTCCTTAAT
TTTGTAATCTTTTTATTTTATTTTTTTATTTACGTTGGCTCAATTTCTAA
TTTTGTTTAAATTGATGTATATGCAGTTCTGTTTACTATGGACAATACAA
ATGTTCTGGACCTGGAGCTGTGACATCAAAAAGAGTTGACTGGTCACGAG
TCCTAACGAGTGAAGAAGCTGCACCTTTCATAACTAAGGACTCCATTGAC
GGCAAAGCTTGGATTAGGGCAGCGCCTACCAGTTTCAAGAAGAAGGCATT
TCCCCCCAAGAATTGA

protein sequence of MDP0000278119

>MDP0000278119 ID=MDP0000278119; Name=MDP0000278119; organism=Malus x domestica; type=polypeptide; length=338bp
MVAVCGTSMKTKCFFVMASLYVLLALSQAEAETTQGSTAILITVDQSGKG
DYEKIQDAIDAVPSNNVDLVFIRVKPGVYKEKITVPADKPFITISGTKAV
DTIITWNDSGDIFESATFSVLASDFIGRYLTIQNTYGSGGKAVALRASGD
RAAFYVCRILSYQDTLLDDTGRHYYNNCYIEGATDFICGNGASFFEKCHL
HSISNGGGAITAQRRMSPSEDTGFFFFGCKITGVKTAVLGRPWGVYSRVI
FAFTYMPNIILPQGWNDWGNSADQLSSVYYGQYKCSGPGAVTSKRVDWSR
VLTSEEAAPFITKDSIDGKAWIRAAPTSFKKKAFPPKN

mRNA from alignment at chr12:21916544..21918159+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000278119 ID=MDP0000278119; Name=MDP0000278119; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr12:21916544..21918159+ (Malus x domestica

mRNA from alignment at MDC006993.145:9654..11269+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000278119 ID=MDP0000278119; Name=MDP0000278119; organism=Malus x domestica; type=mRNA; length=1616bp; location=Sequence derived from: MDC006993.145:9654..11269+ (Malus x domestica
ATGGTGGCTGTTTGTGGTACTTCTATGAAGACCAAGTGCTTCTTTGTCAT
GGCTTCATTGTATGTTCTTCTGGCGCTTTCTCAAGCAGAAGCAGAAACAA
CTCAGGGGTCCACGGCAATTCTAATAACCGTGGATCAGTCTGGGAAAGGC
GATTACGAGAAAATACAAGATGCCATCGACGCGGTGCCGTCGAATAACGT
CGATCTTGTGTTCATTAGGGTTAAGCCTGGAGTCTACAAAGAAAAAATTA
CTGTCCCCGCGGACAAACCCTTTATTACAATAAGTGGCACAAAGGCAGTT
GACACTATAATTACGTGGAACGACAGCGGAGATATATTTGAATCTGCAAC
TTTCTCTGTGTTGGCTTCGGATTTTATAGGGCGCTACCTCACAATTCAGG
TACATATATTTATATGTGTGTGTGTGTGTGTACGTATATAGTACGTTTCA
CATGCATGTCCATGCATATATACGCTTGAATCTAATAATTTTAATTGCTG
AATTCATTGCAGAACACTTATGGAAGCGGTGGTAAAGCAGTGGCGCTGAG
GGCCTCAGGGGATAGAGCAGCATTTTATGTGTGCAGAATTTTGTCTTACC
AAGATACCCTACTTGACGATACCGGCAGGCACTACTACAACAACTGTTAT
ATTGAAGGAGCCACTGATTTTATATGTGGAAATGGTGCTTCTTTTTTTGA
GGTAACTTATAGAAGAAAACAATATTGTTAGCGTTTTGGTTTTTGAAAAT
TATTGATTTTATTGTTTCGGTCTAAACCATCACACTATCACGCGTGTTGT
TATCAATATGTTCATGTTGTTATCAATATGTTCATGATACACTTGATCTA
TCTATATATTATAATATGCGGATTAGTAGCTAGTAACATGCATGTGATGT
TAGGACCATCAGCTCAATGATTTCTCGAGGATTAATTAGTATGGTGCTAA
TTCATATGTTTGGGCTTCAATTGATGAATAAATTAATTAAATTTTCCAGA
AGTGCCATTTGCATTCGATTTCGAATGGAGGAGGAGCCATAACAGCCCAA
AGGAGGATGTCACCTTCAGAGGACACTGGGTTCTTTTTCTTTGGGTGCAA
GATCACTGGCGTCAAAACGGCAGTGTTAGGAAGACCATGGGGTGTCTATT
CCAGAGTCATTTTTGCCTTCACTTACATGCCTAATATCATACTCCCTCAG
GGTTGGAACGACTGGGGTAACTCAGCCGACCAATTAAGGTAACTCTAACG
ATAAATTTTATTAGTATTCCACAATTATGACCAGGTGCTCCTCCGTTTAT
ATGATGACTATTTTCCATTGCTAATAATGGCTTCTTTTTTTKTCCTTAAT
TTTGTAATCTTTTTATTTTATTTTTTTATTTACGTTGGCTCAATTTCTAA
TTTTGTTTAAATTGATGTATATGCAGTTCTGTTTACTATGGACAATACAA
ATGTTCTGGACCTGGAGCTGTGACATCAAAAAGAGTTGACTGGTCACGAG
TCCTAACGAGTGAAGAAGCTGCACCTTTCATAACTAAGGACTCCATTGAC
GGCAAAGCTTGGATTAGGGCAGCGCCTACCAGTTTCAAGAAGAAGGCATT
TCCCCCCAAGAATTGA

Coding sequence (CDS) from alignment at MDC006993.145:9654..11269+

>MDP0000278119 ID=MDP0000278119; Name=MDP0000278119; organism=Malus x domestica; type=CDS; length=1017bp; location=Sequence derived from: MDC006993.145:9654..11269+ (Malus x domestica
ATGGTGGCTGTTTGTGGTACTTCTATGAAGACCAAGTGCTTCTTTGTCAT
GGCTTCATTGTATGTTCTTCTGGCGCTTTCTCAAGCAGAAGCAGAAACAA
CTCAGGGGTCCACGGCAATTCTAATAACCGTGGATCAGTCTGGGAAAGGC
GATTACGAGAAAATACAAGATGCCATCGACGCGGTGCCGTCGAATAACGT
CGATCTTGTGTTCATTAGGGTTAAGCCTGGAGTCTACAAAGAAAAAATTA
CTGTCCCCGCGGACAAACCCTTTATTACAATAAGTGGCACAAAGGCAGTT
GACACTATAATTACGTGGAACGACAGCGGAGATATATTTGAATCTGCAAC
TTTCTCTGTGTTGGCTTCGGATTTTATAGGGCGCTACCTCACAATTCAGA
ACACTTATGGAAGCGGTGGTAAAGCAGTGGCGCTGAGGGCCTCAGGGGAT
AGAGCAGCATTTTATGTGTGCAGAATTTTGTCTTACCAAGATACCCTACT
TGACGATACCGGCAGGCACTACTACAACAACTGTTATATTGAAGGAGCCA
CTGATTTTATATGTGGAAATGGTGCTTCTTTTTTTGAGAAGTGCCATTTG
CATTCGATTTCGAATGGAGGAGGAGCCATAACAGCCCAAAGGAGGATGTC
ACCTTCAGAGGACACTGGGTTCTTTTTCTTTGGGTGCAAGATCACTGGCG
TCAAAACGGCAGTGTTAGGAAGACCATGGGGTGTCTATTCCAGAGTCATT
TTTGCCTTCACTTACATGCCTAATATCATACTCCCTCAGGGTTGGAACGA
CTGGGGTAACTCAGCCGACCAATTAAGTTCTGTTTACTATGGACAATACA
AATGTTCTGGACCTGGAGCTGTGACATCAAAAAGAGTTGACTGGTCACGA
GTCCTAACGAGTGAAGAAGCTGCACCTTTCATAACTAAGGACTCCATTGA
CGGCAAAGCTTGGATTAGGGCAGCGCCTACCAGTTTCAAGAAGAAGGCAT
TTCCCCCCAAGAATTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000070	Pectinesterase_cat
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold
IPR018040	Pectinesterase_Tyr_AS

Vocabulary: **Cellular Component**
Term	Definition
GO:0005618	cell wall

Vocabulary: **Molecular Function**
Term	Definition
GO:0030599	pectinesterase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0042545	cell wall modification