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Transcript Overview
Name | MDP0000288901 |
Unique Name | MDP0000288901 |
Type | mRNA |
Organism | Malus x domestica (Apple) |
Sequence length | 3402 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
MDP0000288901 | MDP0000288901 | Malus x domestica | polypeptide |
InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000070 | Pectinesterase, catalytic | PFAM | PF01095 | Pectinesterase | coord: 250..551 score: 5.4e |
IPR006501 | Pectinesterase inhibitor | GENE3D | 1.20.140.40 | no description | coord: 36..198 score: 1.2 |
IPR006501 | Pectinesterase inhibitor | PFAM | PF04043 | PMEI | coord: 35..197 score: 1.2 |
IPR006501 | Pectinesterase inhibitor | SMART | SM00856 | Plant invertase/pectin methylesterase inhibi | coord: 33..197 score: 4.3 |
IPR006501 | Pectinesterase inhibitor | TIGRFAMs | TIGR01614 | PME_inhib: pectinesterase inhibitor domain | coord: 29..198 score: 3 |
IPR006501 | Pectinesterase inhibitor | SUPERFAMILY | 101148 | Plant invertase/pectin methylesterase inhibitor | coord: 35..204 score: 7.5 |
IPR011050 | Pectin lyase fold/virulence factor | SUPERFAMILY | 51126 | Pectin lyase-like | coord: 242..565 score: 7.1e |
IPR012334 | Pectin lyase fold | GENE3D | 2.160.20.10 | no description | coord: 247..564 score: 4.4e |
IPR018040 | Pectinesterase, active site | PROSITE | PS00503 | PECTINESTERASE_2 | coord: 397..406 score |
None | No IPR available | PANTHER | PTHR22931 | FAMILY NOT NAMED | coord: 115..515 score: 2.4 |
None | No IPR available | PANTHER | PTHR22931:SF5 | METHYLESTERASE INHIBITOR-RELATED | coord: 115..515 score: 2.4 |
None | No IPR available | SEG | seg | seg | coord: 53..70 score: NAcoord: 117..130 score |
None | No IPR available | SEG | seg | seg | coord: 59..71 score |
None | No IPR available | SEG | seg | seg | coord: 7..22 score |
None | No IPR available | SEG | seg | seg | coord: 5..25 score |
None | No IPR available | SEG | seg | seg | coord: 6..21 score |
Sequences
The
following sequences are available for this feature:
mRNA sequence >MDP0000288901 ID=MDP0000288901; Name=MDP0000288901; organism=Malus x domestica; type=mRNA; length=3402bp ATGTTCTTGATCATACAAATCTTGCTGCCATCAGCAGAAGCTAATCAGGC TTCTTCACCATCCCTTTTCTCCAAATTCTCCAGAGCAGGACCATCCAAAG AAGCCAACAATATTGTATCTTTTTGCAAACATACCCCTCACCAAGCAGCT TGTGAATCCATTTTCATCTCCAAAACAAGTAATATTACTACAATTACTAA ACCACCCCCTCAAACCCTTGAAGGCCTCCTTGTCCACTCAGTCGACTTCA GCATTATAAAGGCTCGTTTGGCTCGCGCTCTTGCCTATAATCTTACCATT TCCCATTTTCAAACCTCTCATCAAACACACTCGCTTGGTGGCATCAATGA CTGCCTCGAGCTGCTCGAGGACAGTATCGATTTACTTGATAATGTCATAC TCAAATACGACAGTACCAAAAGCGCCTATGGCCATACTGACGACGATATC CAAAGCTGGCTCAGTGCTGCTCTTACCAATCAAGAAACTTGTCTAGACAG CCTTAAGAGTGATAAGTCAATGGTAGACAAGGGCGCTATGGAGACTTCAG CTAAAAATATGAACCAATTCATAAGTAACTCTCTGTCACTTTTCATGCTC ACTAGTAGGTCACCAAAGCAGGCCCAAAACAAAAACCCTAGTAACATTGT CGGTGGCCGGAGGCTGTTGTCGGATGATTTTCCGAGTTGGGTGTCCGGCG CTGAAAGAAAGCTTCTAGAAGCTTCTGTGGGTGACTTAGAAGCACATRCT GTGGTGGCTTTGGATGGGAGTGGTACGCACAAGAGTATCGGTGAAGCACT TGGGTTGGTGGCCTCATTGGCTGAGAGTGGAGGAGGTGGCAGRTCTGTAA TTCATGTAAAAGCTGGRACTTATCATGAATATATTAAAATACCAACGAAG CAGAAGAACGTTATGTTAATTGGTGATGGTTTGGGGACGACGATTRTYGT GGGCGATAGGAACTCTGATGATGGTTGGACCACTTTCSAGTCTGCYACRG TTGGTAAGAACATATCAAACTTCCCTCTTTTTWAGKTTTTTTTTTTCTAA TTAATAAGAGAATTCCCTCTTCTTTTATTTATTTATTTAAAATATATGGC TTTTTTATTTTGTCAATTTATAAAATATGTAAACTACCTGTTAACAAAAA AAACTTTTGTTATAAAAAATGATGAGAAGACAATTTAGTCCTAGATCAAA AAATAAAATCATAACAAATGATGTGTCGCACAAGTTCAAAACTTCTCCGT CTTTAATTATTGTAATCTTTTTGAACCTCCTTAATAATAATATCTTCTGT ATAAAAAAAATCAAAACTGTAAGAGAAAAACTAATATTTAATAACTGGTG CTATTGTCACTCACCAAAATTATTTACAAAACTCACCTTTAAATGAAAAT TATTATGATTTTATACTCGTTGAAAGATAATATTAAAAATAAAATTATAA AGAAAAAATTATAGGGTTTGCTACCACTCATCTTATTAGAACTTTTCTTT GACAAATCTGGTTAACCGGTCTCCCATCATTAAGAGGCCAACTTTGGGTT GTCTTGTTGTGTCCGTGAGGGAGCAATGGTAGCAATGGTAGCAATGGTCT CGATCGTAGCTCCCGCATTACAGTGGGAGACCAATCAACATCAACGTTAA TTAGTCAGCTAAATATTACATCTAATCATTCTCTTTATCATCATTTAAAA ATTATATCTACAAAACATCATTCAATCTGATATTATTTATTTATCTCTAT GTGTCAAACTAATAAACGATTTTGATAACAAGTAGCATCGTTGTGATGAA CCGTCAATTTGTTTGATGCATACGAACATTTCCGATTATGAAATCCATAC GTCAAAAATACATTAATCATAAATGGAGGATGAGTAGATTCTCTATGAAG TAAAAACAAGCATTATTATCCATAAAAAAAWTTAAAAAAAAAGACAAGAA AATATAAAAAGGGCAGTTCACATGTCTATACACTAACATCAAATAGAAAA GAAATGAAATCATAAAAGGAATGGTTGGTTCTACTAAAATTCCTTATTTT CTTGCTTTAGTCCACCACCTTCCTTCGATATCCATTTCCCTGAATTATAA TGTTAGACGTGATGCTCATAAAGGATGATCAAGGTTTTAATTTCGTGTTT CTTATTTTGCTCGCATGTACACCGCACACCCGCTTGGAAATTCTCAACTT ATGGTTGTAAAGACCAACATGAGAAAAAAGAGATTCTTTCATGCATGAAT TAAACATAATTTTATAATTATTCATAACACAGATGATTAAACTCATTAAT ACAATTTGAGACGAAAAAATTACATTTACATTTTGGTAAAACAAATTGTA AATTTTTATTTTTATTTATATTTTACGACTATGATGAGTATTTTACATCC CCTTAAAAGTTGTACATTGGATAGCTGTTTAGGGCGAGGGAGAGAGAAAG TGGAGGAGTAAAACTATAGTTACGTATGGCTAAGTGAAGGAAAAAAAAAA CAGCAAAAACTTGTTTGTGCAAAATTATTTTAGTGACTTTCTTTTTTATT TTTTAAAATTTTCTTCAGTTATGTATAAAAGGATATAGTAGTTCTTTTTT TTTTTTTTTTGACAAAAAGAGTTGGGAAGGAAAATTTTCTCTTACTTAAT AAAAATTGCATGTCCTCATGGCACATAGTAACATGCAAACAACCGTGTTT TCAGCTGCTATGGGAGACGGCTTTATAGCTCGTGACATAACGTTTGAGAA TAATGCCGGTCCATCAAAGCACCAAGCGGTTGCCCTCCGAGTCGGCGCTG ACAAGTCAGTGATTTTCCGATGCTCCATYGTCGGYTACCAAGACACCCTY TACACTCACTCCAAGCGCCAGTTCTACAGAGACACCCAAATCTACGGAAC AGTTGATTTCATATTTGGAAACTCAGCAGCAGTTTTCCAGAACTGCAACA TTTACGCAAGAAAACCCGCTTCAACCGGTCTCAAAAATTTTGTCACAGCA CAAGGTAGAACCAGCCCGGATCAGAACACTGGAATTTCGATTCATAACTG CAAAATTTCAGCTGCTTCGGATCTTGCTCCGGTGAAATCCAAGTACGAGA CGTATCTTGGGAGGCCATGGAAGCAGTATTCAAGAACAGTTATCATGCAG TCTTACTTGGATGACTCAATCAGTAGGGCTGGTTGGTCACCTTGGTCAGG TGGGTTTGCTTTAAACACATTGTATTATGGTGAGTATTCAAATTATGGGC CTGGGGCTTCAACTTCGGGTCGGGTCCGGTGGCCGGGATATCATGCATCA CTTACACCGGTTGCTGCACAAGGCTTCACTGTTAGCGGTTTCATCTCTGG GAACCTTTGGTTGCCTTCCACTGGGGTTTCTTTTGATTCGGGACTTCATT AA back to topprotein sequence of MDP0000288901 >MDP0000288901 ID=MDP0000288901; Name=MDP0000288901; organism=Malus x domestica; type=polypeptide; length=566bp MFLIIQILLPSAEANQASSPSLFSKFSRAGPSKEANNIVSFCKHTPHQAA CESIFISKTSNITTITKPPPQTLEGLLVHSVDFSIIKARLARALAYNLTI SHFQTSHQTHSLGGINDCLELLEDSIDLLDNVILKYDSTKSAYGHTDDDI QSWLSAALTNQETCLDSLKSDKSMVDKGAMETSAKNMNQFISNSLSLFML TSRSPKQAQNKNPSNIVGGRRLLSDDFPSWVSGAERKLLEASVGDLEAHX VVALDGSGTHKSIGEALGLVASLAESGGGGRSVIHVKAGTYHEYIKIPTK QKNVMLIGDGLGTTIXVGDRNSDDGWTTFXSATVAAMGDGFIARDITFEN NAGPSKHQAVALRVGADKSVIFRCSIVGYQDTLYTHSKRQFYRDTQIYGT VDFIFGNSAAVFQNCNIYARKPASTGLKNFVTAQGRTSPDQNTGISIHNC KISAASDLAPVKSKYETYLGRPWKQYSRTVIMQSYLDDSISRAGWSPWSG GFALNTLYYGEYSNYGPGASTSGRVRWPGYHASLTPVAAQGFTVSGFISG NLWLPSTGVSFDSGLH back to topmRNA from alignment at chr1:7448852..7452253+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000288901 ID=MDP0000288901; Name=MDP0000288901; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr1:7448852..7452253+ (Malus x domestica
back to topmRNA from alignment at MDC009578.467:687..4088+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000288901 ID=MDP0000288901; Name=MDP0000288901; organism=Malus x domestica; type=mRNA; length=3402bp; location=Sequence derived from: MDC009578.467:687..4088+ (Malus x domestica ATGTTCTTGATCATACAAATCTTGCTGCCATCAGCAGAAGCTAATCAGGC
TTCTTCACCATCCCTTTTCTCCAAATTCTCCAGAGCAGGACCATCCAAAG
AAGCCAACAATATTGTATCTTTTTGCAAACATACCCCTCACCAAGCAGCT
TGTGAATCCATTTTCATCTCCAAAACAAGTAATATTACTACAATTACTAA
ACCACCCCCTCAAACCCTTGAAGGCCTCCTTGTCCACTCAGTCGACTTCA
GCATTATAAAGGCTCGTTTGGCTCGCGCTCTTGCCTATAATCTTACCATT
TCCCATTTTCAAACCTCTCATCAAACACACTCGCTTGGTGGCATCAATGA
CTGCCTCGAGCTGCTCGAGGACAGTATCGATTTACTTGATAATGTCATAC
TCAAATACGACAGTACCAAAAGCGCCTATGGCCATACTGACGACGATATC
CAAAGCTGGCTCAGTGCTGCTCTTACCAATCAAGAAACTTGTCTAGACAG
CCTTAAGAGTGATAAGTCAATGGTAGACAAGGGCGCTATGGAGACTTCAG
CTAAAAATATGAACCAATTCATAAGTAACTCTCTGTCACTTTTCATGCTC
ACTAGTAGGTCACCAAAGCAGGCCCAAAACAAAAACCCTAGTAACATTGT
CGGTGGCCGGAGGCTGTTGTCGGATGATTTTCCGAGTTGGGTGTCCGGCG
CTGAAAGAAAGCTTCTAGAAGCTTCTGTGGGTGACTTAGAAGCACATRCT
GTGGTGGCTTTGGATGGGAGTGGTACGCACAAGAGTATCGGTGAAGCACT
TGGGTTGGTGGCCTCATTGGCTGAGAGTGGAGGAGGTGGCAGRTCTGTAA
TTCATGTAAAAGCTGGRACTTATCATGAATATATTAAAATACCAACGAAG
CAGAAGAACGTTATGTTAATTGGTGATGGTTTGGGGACGACGATTRTYGT
GGGCGATAGGAACTCTGATGATGGTTGGACCACTTTCSAGTCTGCYACRG
TTGGTAAGAACATATCAAACTTCCCTCTTTTTWAGKTTTTTTTTTTCTAA
TTAATAAGAGAATTCCCTCTTCTTTTATTTATTTATTTAAAATATATGGC
TTTTTTATTTTGTCAATTTATAAAATATGTAAACTACCTGTTAACAAAAA
AAACTTTTGTTATAAAAAATGATGAGAAGACAATTTAGTCCTAGATCAAA
AAATAAAATCATAACAAATGATGTGTCGCACAAGTTCAAAACTTCTCCGT
CTTTAATTATTGTAATCTTTTTGAACCTCCTTAATAATAATATCTTCTGT
ATAAAAAAAATCAAAACTGTAAGAGAAAAACTAATATTTAATAACTGGTG
CTATTGTCACTCACCAAAATTATTTACAAAACTCACCTTTAAATGAAAAT
TATTATGATTTTATACTCGTTGAAAGATAATATTAAAAATAAAATTATAA
AGAAAAAATTATAGGGTTTGCTACCACTCATCTTATTAGAACTTTTCTTT
GACAAATCTGGTTAACCGGTCTCCCATCATTAAGAGGCCAACTTTGGGTT
GTCTTGTTGTGTCCGTGAGGGAGCAATGGTAGCAATGGTAGCAATGGTCT
CGATCGTAGCTCCCGCATTACAGTGGGAGACCAATCAACATCAACGTTAA
TTAGTCAGCTAAATATTACATCTAATCATTCTCTTTATCATCATTTAAAA
ATTATATCTACAAAACATCATTCAATCTGATATTATTTATTTATCTCTAT
GTGTCAAACTAATAAACGATTTTGATAACAAGTAGCATCGTTGTGATGAA
CCGTCAATTTGTTTGATGCATACGAACATTTCCGATTATGAAATCCATAC
GTCAAAAATACATTAATCATAAATGGAGGATGAGTAGATTCTCTATGAAG
TAAAAACAAGCATTATTATCCATAAAAAAAWTTAAAAAAAAAGACAAGAA
AATATAAAAAGGGCAGTTCACATGTCTATACACTAACATCAAATAGAAAA
GAAATGAAATCATAAAAGGAATGGTTGGTTCTACTAAAATTCCTTATTTT
CTTGCTTTAGTCCACCACCTTCCTTCGATATCCATTTCCCTGAATTATAA
TGTTAGACGTGATGCTCATAAAGGATGATCAAGGTTTTAATTTCGTGTTT
CTTATTTTGCTCGCATGTACACCGCACACCCGCTTGGAAATTCTCAACTT
ATGGTTGTAAAGACCAACATGAGAAAAAAGAGATTCTTTCATGCATGAAT
TAAACATAATTTTATAATTATTCATAACACAGATGATTAAACTCATTAAT
ACAATTTGAGACGAAAAAATTACATTTACATTTTGGTAAAACAAATTGTA
AATTTTTATTTTTATTTATATTTTACGACTATGATGAGTATTTTACATCC
CCTTAAAAGTTGTACATTGGATAGCTGTTTAGGGCGAGGGAGAGAGAAAG
TGGAGGAGTAAAACTATAGTTACGTATGGCTAAGTGAAGGAAAAAAAAAA
CAGCAAAAACTTGTTTGTGCAAAATTATTTTAGTGACTTTCTTTTTTATT
TTTTAAAATTTTCTTCAGTTATGTATAAAAGGATATAGTAGTTCTTTTTT
TTTTTTTTTTGACAAAAAGAGTTGGGAAGGAAAATTTTCTCTTACTTAAT
AAAAATTGCATGTCCTCATGGCACATAGTAACATGCAAACAACCGTGTTT
TCAGCTGCTATGGGAGACGGCTTTATAGCTCGTGACATAACGTTTGAGAA
TAATGCCGGTCCATCAAAGCACCAAGCGGTTGCCCTCCGAGTCGGCGCTG
ACAAGTCAGTGATTTTCCGATGCTCCATYGTCGGYTACCAAGACACCCTY
TACACTCACTCCAAGCGCCAGTTCTACAGAGACACCCAAATCTACGGAAC
AGTTGATTTCATATTTGGAAACTCAGCAGCAGTTTTCCAGAACTGCAACA
TTTACGCAAGAAAACCCGCTTCAACCGGTCTCAAAAATTTTGTCACAGCA
CAAGGTAGAACCAGCCCGGATCAGAACACTGGAATTTCGATTCATAACTG
CAAAATTTCAGCTGCTTCGGATCTTGCTCCGGTGAAATCCAAGTACGAGA
CGTATCTTGGGAGGCCATGGAAGCAGTATTCAAGAACAGTTATCATGCAG
TCTTACTTGGATGACTCAATCAGTAGGGCTGGTTGGTCACCTTGGTCAGG
TGGGTTTGCTTTAAACACATTGTATTATGGTGAGTATTCAAATTATGGGC
CTGGGGCTTCAACTTCGGGTCGGGTCCGGTGGCCGGGATATCATGCATCA
CTTACACCGGTTGCTGCACAAGGCTTCACTGTTAGCGGTTTCATCTCTGG
GAACCTTTGGTTGCCTTCCACTGGGGTTTCTTTTGATTCGGGACTTCATT
AA back to topCoding sequence (CDS) from alignment at MDC009578.467:687..4088+ >MDP0000288901 ID=MDP0000288901; Name=MDP0000288901; organism=Malus x domestica; type=CDS; length=1701bp; location=Sequence derived from: MDC009578.467:687..4088+ (Malus x domestica ATGTTCTTGATCATACAAATCTTGCTGCCATCAGCAGAAGCTAATCAGGC TTCTTCACCATCCCTTTTCTCCAAATTCTCCAGAGCAGGACCATCCAAAG AAGCCAACAATATTGTATCTTTTTGCAAACATACCCCTCACCAAGCAGCT TGTGAATCCATTTTCATCTCCAAAACAAGTAATATTACTACAATTACTAA ACCACCCCCTCAAACCCTTGAAGGCCTCCTTGTCCACTCAGTCGACTTCA GCATTATAAAGGCTCGTTTGGCTCGCGCTCTTGCCTATAATCTTACCATT TCCCATTTTCAAACCTCTCATCAAACACACTCGCTTGGTGGCATCAATGA CTGCCTCGAGCTGCTCGAGGACAGTATCGATTTACTTGATAATGTCATAC TCAAATACGACAGTACCAAAAGCGCCTATGGCCATACTGACGACGATATC CAAAGCTGGCTCAGTGCTGCTCTTACCAATCAAGAAACTTGTCTAGACAG CCTTAAGAGTGATAAGTCAATGGTAGACAAGGGCGCTATGGAGACTTCAG CTAAAAATATGAACCAATTCATAAGTAACTCTCTGTCACTTTTCATGCTC ACTAGTAGGTCACCAAAGCAGGCCCAAAACAAAAACCCTAGTAACATTGT CGGTGGCCGGAGGCTGTTGTCGGATGATTTTCCGAGTTGGGTGTCCGGCG CTGAAAGAAAGCTTCTAGAAGCTTCTGTGGGTGACTTAGAAGCACATRCT GTGGTGGCTTTGGATGGGAGTGGTACGCACAAGAGTATCGGTGAAGCACT TGGGTTGGTGGCCTCATTGGCTGAGAGTGGAGGAGGTGGCAGRTCTGTAA TTCATGTAAAAGCTGGRACTTATCATGAATATATTAAAATACCAACGAAG CAGAAGAACGTTATGTTAATTGGTGATGGTTTGGGGACGACGATTRTYGT GGGCGATAGGAACTCTGATGATGGTTGGACCACTTTCSAGTCTGCYACRG TTGCTGCTATGGGAGACGGCTTTATAGCTCGTGACATAACGTTTGAGAAT AATGCCGGTCCATCAAAGCACCAAGCGGTTGCCCTCCGAGTCGGCGCTGA CAAGTCAGTGATTTTCCGATGCTCCATYGTCGGYTACCAAGACACCCTYT ACACTCACTCCAAGCGCCAGTTCTACAGAGACACCCAAATCTACGGAACA GTTGATTTCATATTTGGAAACTCAGCAGCAGTTTTCCAGAACTGCAACAT TTACGCAAGAAAACCCGCTTCAACCGGTCTCAAAAATTTTGTCACAGCAC AAGGTAGAACCAGCCCGGATCAGAACACTGGAATTTCGATTCATAACTGC AAAATTTCAGCTGCTTCGGATCTTGCTCCGGTGAAATCCAAGTACGAGAC GTATCTTGGGAGGCCATGGAAGCAGTATTCAAGAACAGTTATCATGCAGT CTTACTTGGATGACTCAATCAGTAGGGCTGGTTGGTCACCTTGGTCAGGT GGGTTTGCTTTAAACACATTGTATTATGGTGAGTATTCAAATTATGGGCC TGGGGCTTCAACTTCGGGTCGGGTCCGGTGGCCGGGATATCATGCATCAC TTACACCGGTTGCTGCACAAGGCTTCACTGTTAGCGGTTTCATCTCTGGG AACCTTTGGTTGCCTTCCACTGGGGTTTCTTTTGATTCGGGACTTCATTA A back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0005618 | cell wall |
Vocabulary: Molecular Function
Term | Definition |
GO:0030599 | pectinesterase activity |
GO:0004857 | enzyme inhibitor activity |
Vocabulary: Biological Process
Term | Definition |
GO:0042545 | cell wall modification |
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