MDP0000288901, MDP0000288901 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000288901
Unique NameMDP0000288901
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length3402
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000288901_exon_1MDP0000288901_exon_1Malus x domesticaCDS
MDP0000288901_exon_2MDP0000288901_exon_2Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000288901MDP0000288901Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 250..551
score: 5.4e
IPR006501Pectinesterase inhibitorGENE3D1.20.140.40no descriptioncoord: 36..198
score: 1.2
IPR006501Pectinesterase inhibitorPFAMPF04043PMEIcoord: 35..197
score: 1.2
IPR006501Pectinesterase inhibitorSMARTSM00856Plant invertase/pectin methylesterase inhibicoord: 33..197
score: 4.3
IPR006501Pectinesterase inhibitorTIGRFAMsTIGR01614PME_inhib: pectinesterase inhibitor domaincoord: 29..198
score: 3
IPR006501Pectinesterase inhibitorSUPERFAMILY101148Plant invertase/pectin methylesterase inhibitorcoord: 35..204
score: 7.5
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 242..565
score: 7.1e
IPR012334Pectin lyase foldGENE3D2.160.20.10no descriptioncoord: 247..564
score: 4.4e
IPR018040Pectinesterase, active sitePROSITEPS00503PECTINESTERASE_2coord: 397..406
score
NoneNo IPR availablePANTHERPTHR22931FAMILY NOT NAMEDcoord: 115..515
score: 2.4
NoneNo IPR availablePANTHERPTHR22931:SF5METHYLESTERASE INHIBITOR-RELATEDcoord: 115..515
score: 2.4
NoneNo IPR availableSEGsegsegcoord: 53..70
score: NAcoord: 117..130
score
NoneNo IPR availableSEGsegsegcoord: 59..71
score
NoneNo IPR availableSEGsegsegcoord: 7..22
score
NoneNo IPR availableSEGsegsegcoord: 5..25
score
NoneNo IPR availableSEGsegsegcoord: 6..21
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000288901 ID=MDP0000288901; Name=MDP0000288901; organism=Malus x domestica; type=mRNA; length=3402bp
ATGTTCTTGATCATACAAATCTTGCTGCCATCAGCAGAAGCTAATCAGGC
TTCTTCACCATCCCTTTTCTCCAAATTCTCCAGAGCAGGACCATCCAAAG
AAGCCAACAATATTGTATCTTTTTGCAAACATACCCCTCACCAAGCAGCT
TGTGAATCCATTTTCATCTCCAAAACAAGTAATATTACTACAATTACTAA
ACCACCCCCTCAAACCCTTGAAGGCCTCCTTGTCCACTCAGTCGACTTCA
GCATTATAAAGGCTCGTTTGGCTCGCGCTCTTGCCTATAATCTTACCATT
TCCCATTTTCAAACCTCTCATCAAACACACTCGCTTGGTGGCATCAATGA
CTGCCTCGAGCTGCTCGAGGACAGTATCGATTTACTTGATAATGTCATAC
TCAAATACGACAGTACCAAAAGCGCCTATGGCCATACTGACGACGATATC
CAAAGCTGGCTCAGTGCTGCTCTTACCAATCAAGAAACTTGTCTAGACAG
CCTTAAGAGTGATAAGTCAATGGTAGACAAGGGCGCTATGGAGACTTCAG
CTAAAAATATGAACCAATTCATAAGTAACTCTCTGTCACTTTTCATGCTC
ACTAGTAGGTCACCAAAGCAGGCCCAAAACAAAAACCCTAGTAACATTGT
CGGTGGCCGGAGGCTGTTGTCGGATGATTTTCCGAGTTGGGTGTCCGGCG
CTGAAAGAAAGCTTCTAGAAGCTTCTGTGGGTGACTTAGAAGCACATRCT
GTGGTGGCTTTGGATGGGAGTGGTACGCACAAGAGTATCGGTGAAGCACT
TGGGTTGGTGGCCTCATTGGCTGAGAGTGGAGGAGGTGGCAGRTCTGTAA
TTCATGTAAAAGCTGGRACTTATCATGAATATATTAAAATACCAACGAAG
CAGAAGAACGTTATGTTAATTGGTGATGGTTTGGGGACGACGATTRTYGT
GGGCGATAGGAACTCTGATGATGGTTGGACCACTTTCSAGTCTGCYACRG
TTGGTAAGAACATATCAAACTTCCCTCTTTTTWAGKTTTTTTTTTTCTAA
TTAATAAGAGAATTCCCTCTTCTTTTATTTATTTATTTAAAATATATGGC
TTTTTTATTTTGTCAATTTATAAAATATGTAAACTACCTGTTAACAAAAA
AAACTTTTGTTATAAAAAATGATGAGAAGACAATTTAGTCCTAGATCAAA
AAATAAAATCATAACAAATGATGTGTCGCACAAGTTCAAAACTTCTCCGT
CTTTAATTATTGTAATCTTTTTGAACCTCCTTAATAATAATATCTTCTGT
ATAAAAAAAATCAAAACTGTAAGAGAAAAACTAATATTTAATAACTGGTG
CTATTGTCACTCACCAAAATTATTTACAAAACTCACCTTTAAATGAAAAT
TATTATGATTTTATACTCGTTGAAAGATAATATTAAAAATAAAATTATAA
AGAAAAAATTATAGGGTTTGCTACCACTCATCTTATTAGAACTTTTCTTT
GACAAATCTGGTTAACCGGTCTCCCATCATTAAGAGGCCAACTTTGGGTT
GTCTTGTTGTGTCCGTGAGGGAGCAATGGTAGCAATGGTAGCAATGGTCT
CGATCGTAGCTCCCGCATTACAGTGGGAGACCAATCAACATCAACGTTAA
TTAGTCAGCTAAATATTACATCTAATCATTCTCTTTATCATCATTTAAAA
ATTATATCTACAAAACATCATTCAATCTGATATTATTTATTTATCTCTAT
GTGTCAAACTAATAAACGATTTTGATAACAAGTAGCATCGTTGTGATGAA
CCGTCAATTTGTTTGATGCATACGAACATTTCCGATTATGAAATCCATAC
GTCAAAAATACATTAATCATAAATGGAGGATGAGTAGATTCTCTATGAAG
TAAAAACAAGCATTATTATCCATAAAAAAAWTTAAAAAAAAAGACAAGAA
AATATAAAAAGGGCAGTTCACATGTCTATACACTAACATCAAATAGAAAA
GAAATGAAATCATAAAAGGAATGGTTGGTTCTACTAAAATTCCTTATTTT
CTTGCTTTAGTCCACCACCTTCCTTCGATATCCATTTCCCTGAATTATAA
TGTTAGACGTGATGCTCATAAAGGATGATCAAGGTTTTAATTTCGTGTTT
CTTATTTTGCTCGCATGTACACCGCACACCCGCTTGGAAATTCTCAACTT
ATGGTTGTAAAGACCAACATGAGAAAAAAGAGATTCTTTCATGCATGAAT
TAAACATAATTTTATAATTATTCATAACACAGATGATTAAACTCATTAAT
ACAATTTGAGACGAAAAAATTACATTTACATTTTGGTAAAACAAATTGTA
AATTTTTATTTTTATTTATATTTTACGACTATGATGAGTATTTTACATCC
CCTTAAAAGTTGTACATTGGATAGCTGTTTAGGGCGAGGGAGAGAGAAAG
TGGAGGAGTAAAACTATAGTTACGTATGGCTAAGTGAAGGAAAAAAAAAA
CAGCAAAAACTTGTTTGTGCAAAATTATTTTAGTGACTTTCTTTTTTATT
TTTTAAAATTTTCTTCAGTTATGTATAAAAGGATATAGTAGTTCTTTTTT
TTTTTTTTTTGACAAAAAGAGTTGGGAAGGAAAATTTTCTCTTACTTAAT
AAAAATTGCATGTCCTCATGGCACATAGTAACATGCAAACAACCGTGTTT
TCAGCTGCTATGGGAGACGGCTTTATAGCTCGTGACATAACGTTTGAGAA
TAATGCCGGTCCATCAAAGCACCAAGCGGTTGCCCTCCGAGTCGGCGCTG
ACAAGTCAGTGATTTTCCGATGCTCCATYGTCGGYTACCAAGACACCCTY
TACACTCACTCCAAGCGCCAGTTCTACAGAGACACCCAAATCTACGGAAC
AGTTGATTTCATATTTGGAAACTCAGCAGCAGTTTTCCAGAACTGCAACA
TTTACGCAAGAAAACCCGCTTCAACCGGTCTCAAAAATTTTGTCACAGCA
CAAGGTAGAACCAGCCCGGATCAGAACACTGGAATTTCGATTCATAACTG
CAAAATTTCAGCTGCTTCGGATCTTGCTCCGGTGAAATCCAAGTACGAGA
CGTATCTTGGGAGGCCATGGAAGCAGTATTCAAGAACAGTTATCATGCAG
TCTTACTTGGATGACTCAATCAGTAGGGCTGGTTGGTCACCTTGGTCAGG
TGGGTTTGCTTTAAACACATTGTATTATGGTGAGTATTCAAATTATGGGC
CTGGGGCTTCAACTTCGGGTCGGGTCCGGTGGCCGGGATATCATGCATCA
CTTACACCGGTTGCTGCACAAGGCTTCACTGTTAGCGGTTTCATCTCTGG
GAACCTTTGGTTGCCTTCCACTGGGGTTTCTTTTGATTCGGGACTTCATT
AA
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protein sequence of MDP0000288901

>MDP0000288901 ID=MDP0000288901; Name=MDP0000288901; organism=Malus x domestica; type=polypeptide; length=566bp
MFLIIQILLPSAEANQASSPSLFSKFSRAGPSKEANNIVSFCKHTPHQAA
CESIFISKTSNITTITKPPPQTLEGLLVHSVDFSIIKARLARALAYNLTI
SHFQTSHQTHSLGGINDCLELLEDSIDLLDNVILKYDSTKSAYGHTDDDI
QSWLSAALTNQETCLDSLKSDKSMVDKGAMETSAKNMNQFISNSLSLFML
TSRSPKQAQNKNPSNIVGGRRLLSDDFPSWVSGAERKLLEASVGDLEAHX
VVALDGSGTHKSIGEALGLVASLAESGGGGRSVIHVKAGTYHEYIKIPTK
QKNVMLIGDGLGTTIXVGDRNSDDGWTTFXSATVAAMGDGFIARDITFEN
NAGPSKHQAVALRVGADKSVIFRCSIVGYQDTLYTHSKRQFYRDTQIYGT
VDFIFGNSAAVFQNCNIYARKPASTGLKNFVTAQGRTSPDQNTGISIHNC
KISAASDLAPVKSKYETYLGRPWKQYSRTVIMQSYLDDSISRAGWSPWSG
GFALNTLYYGEYSNYGPGASTSGRVRWPGYHASLTPVAAQGFTVSGFISG
NLWLPSTGVSFDSGLH
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mRNA from alignment at chr1:7448852..7452253+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000288901 ID=MDP0000288901; Name=MDP0000288901; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr1:7448852..7452253+ (Malus x domestica
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mRNA from alignment at MDC009578.467:687..4088+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000288901 ID=MDP0000288901; Name=MDP0000288901; organism=Malus x domestica; type=mRNA; length=3402bp; location=Sequence derived from: MDC009578.467:687..4088+ (Malus x domestica
ATGTTCTTGATCATACAAATCTTGCTGCCATCAGCAGAAGCTAATCAGGC TTCTTCACCATCCCTTTTCTCCAAATTCTCCAGAGCAGGACCATCCAAAG AAGCCAACAATATTGTATCTTTTTGCAAACATACCCCTCACCAAGCAGCT TGTGAATCCATTTTCATCTCCAAAACAAGTAATATTACTACAATTACTAA ACCACCCCCTCAAACCCTTGAAGGCCTCCTTGTCCACTCAGTCGACTTCA GCATTATAAAGGCTCGTTTGGCTCGCGCTCTTGCCTATAATCTTACCATT TCCCATTTTCAAACCTCTCATCAAACACACTCGCTTGGTGGCATCAATGA CTGCCTCGAGCTGCTCGAGGACAGTATCGATTTACTTGATAATGTCATAC TCAAATACGACAGTACCAAAAGCGCCTATGGCCATACTGACGACGATATC CAAAGCTGGCTCAGTGCTGCTCTTACCAATCAAGAAACTTGTCTAGACAG CCTTAAGAGTGATAAGTCAATGGTAGACAAGGGCGCTATGGAGACTTCAG CTAAAAATATGAACCAATTCATAAGTAACTCTCTGTCACTTTTCATGCTC ACTAGTAGGTCACCAAAGCAGGCCCAAAACAAAAACCCTAGTAACATTGT CGGTGGCCGGAGGCTGTTGTCGGATGATTTTCCGAGTTGGGTGTCCGGCG CTGAAAGAAAGCTTCTAGAAGCTTCTGTGGGTGACTTAGAAGCACATRCT GTGGTGGCTTTGGATGGGAGTGGTACGCACAAGAGTATCGGTGAAGCACT TGGGTTGGTGGCCTCATTGGCTGAGAGTGGAGGAGGTGGCAGRTCTGTAA TTCATGTAAAAGCTGGRACTTATCATGAATATATTAAAATACCAACGAAG CAGAAGAACGTTATGTTAATTGGTGATGGTTTGGGGACGACGATTRTYGT GGGCGATAGGAACTCTGATGATGGTTGGACCACTTTCSAGTCTGCYACRG TTGGTAAGAACATATCAAACTTCCCTCTTTTTWAGKTTTTTTTTTTCTAA TTAATAAGAGAATTCCCTCTTCTTTTATTTATTTATTTAAAATATATGGC TTTTTTATTTTGTCAATTTATAAAATATGTAAACTACCTGTTAACAAAAA AAACTTTTGTTATAAAAAATGATGAGAAGACAATTTAGTCCTAGATCAAA AAATAAAATCATAACAAATGATGTGTCGCACAAGTTCAAAACTTCTCCGT CTTTAATTATTGTAATCTTTTTGAACCTCCTTAATAATAATATCTTCTGT ATAAAAAAAATCAAAACTGTAAGAGAAAAACTAATATTTAATAACTGGTG CTATTGTCACTCACCAAAATTATTTACAAAACTCACCTTTAAATGAAAAT TATTATGATTTTATACTCGTTGAAAGATAATATTAAAAATAAAATTATAA AGAAAAAATTATAGGGTTTGCTACCACTCATCTTATTAGAACTTTTCTTT GACAAATCTGGTTAACCGGTCTCCCATCATTAAGAGGCCAACTTTGGGTT GTCTTGTTGTGTCCGTGAGGGAGCAATGGTAGCAATGGTAGCAATGGTCT CGATCGTAGCTCCCGCATTACAGTGGGAGACCAATCAACATCAACGTTAA TTAGTCAGCTAAATATTACATCTAATCATTCTCTTTATCATCATTTAAAA ATTATATCTACAAAACATCATTCAATCTGATATTATTTATTTATCTCTAT GTGTCAAACTAATAAACGATTTTGATAACAAGTAGCATCGTTGTGATGAA CCGTCAATTTGTTTGATGCATACGAACATTTCCGATTATGAAATCCATAC GTCAAAAATACATTAATCATAAATGGAGGATGAGTAGATTCTCTATGAAG TAAAAACAAGCATTATTATCCATAAAAAAAWTTAAAAAAAAAGACAAGAA AATATAAAAAGGGCAGTTCACATGTCTATACACTAACATCAAATAGAAAA GAAATGAAATCATAAAAGGAATGGTTGGTTCTACTAAAATTCCTTATTTT CTTGCTTTAGTCCACCACCTTCCTTCGATATCCATTTCCCTGAATTATAA TGTTAGACGTGATGCTCATAAAGGATGATCAAGGTTTTAATTTCGTGTTT CTTATTTTGCTCGCATGTACACCGCACACCCGCTTGGAAATTCTCAACTT ATGGTTGTAAAGACCAACATGAGAAAAAAGAGATTCTTTCATGCATGAAT TAAACATAATTTTATAATTATTCATAACACAGATGATTAAACTCATTAAT ACAATTTGAGACGAAAAAATTACATTTACATTTTGGTAAAACAAATTGTA AATTTTTATTTTTATTTATATTTTACGACTATGATGAGTATTTTACATCC CCTTAAAAGTTGTACATTGGATAGCTGTTTAGGGCGAGGGAGAGAGAAAG TGGAGGAGTAAAACTATAGTTACGTATGGCTAAGTGAAGGAAAAAAAAAA CAGCAAAAACTTGTTTGTGCAAAATTATTTTAGTGACTTTCTTTTTTATT TTTTAAAATTTTCTTCAGTTATGTATAAAAGGATATAGTAGTTCTTTTTT TTTTTTTTTTGACAAAAAGAGTTGGGAAGGAAAATTTTCTCTTACTTAAT AAAAATTGCATGTCCTCATGGCACATAGTAACATGCAAACAACCGTGTTT TCAGCTGCTATGGGAGACGGCTTTATAGCTCGTGACATAACGTTTGAGAA TAATGCCGGTCCATCAAAGCACCAAGCGGTTGCCCTCCGAGTCGGCGCTG ACAAGTCAGTGATTTTCCGATGCTCCATYGTCGGYTACCAAGACACCCTY TACACTCACTCCAAGCGCCAGTTCTACAGAGACACCCAAATCTACGGAAC AGTTGATTTCATATTTGGAAACTCAGCAGCAGTTTTCCAGAACTGCAACA TTTACGCAAGAAAACCCGCTTCAACCGGTCTCAAAAATTTTGTCACAGCA CAAGGTAGAACCAGCCCGGATCAGAACACTGGAATTTCGATTCATAACTG CAAAATTTCAGCTGCTTCGGATCTTGCTCCGGTGAAATCCAAGTACGAGA CGTATCTTGGGAGGCCATGGAAGCAGTATTCAAGAACAGTTATCATGCAG TCTTACTTGGATGACTCAATCAGTAGGGCTGGTTGGTCACCTTGGTCAGG TGGGTTTGCTTTAAACACATTGTATTATGGTGAGTATTCAAATTATGGGC CTGGGGCTTCAACTTCGGGTCGGGTCCGGTGGCCGGGATATCATGCATCA CTTACACCGGTTGCTGCACAAGGCTTCACTGTTAGCGGTTTCATCTCTGG GAACCTTTGGTTGCCTTCCACTGGGGTTTCTTTTGATTCGGGACTTCATT AA
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Coding sequence (CDS) from alignment at MDC009578.467:687..4088+

>MDP0000288901 ID=MDP0000288901; Name=MDP0000288901; organism=Malus x domestica; type=CDS; length=1701bp; location=Sequence derived from: MDC009578.467:687..4088+ (Malus x domestica
ATGTTCTTGATCATACAAATCTTGCTGCCATCAGCAGAAGCTAATCAGGC
TTCTTCACCATCCCTTTTCTCCAAATTCTCCAGAGCAGGACCATCCAAAG
AAGCCAACAATATTGTATCTTTTTGCAAACATACCCCTCACCAAGCAGCT
TGTGAATCCATTTTCATCTCCAAAACAAGTAATATTACTACAATTACTAA
ACCACCCCCTCAAACCCTTGAAGGCCTCCTTGTCCACTCAGTCGACTTCA
GCATTATAAAGGCTCGTTTGGCTCGCGCTCTTGCCTATAATCTTACCATT
TCCCATTTTCAAACCTCTCATCAAACACACTCGCTTGGTGGCATCAATGA
CTGCCTCGAGCTGCTCGAGGACAGTATCGATTTACTTGATAATGTCATAC
TCAAATACGACAGTACCAAAAGCGCCTATGGCCATACTGACGACGATATC
CAAAGCTGGCTCAGTGCTGCTCTTACCAATCAAGAAACTTGTCTAGACAG
CCTTAAGAGTGATAAGTCAATGGTAGACAAGGGCGCTATGGAGACTTCAG
CTAAAAATATGAACCAATTCATAAGTAACTCTCTGTCACTTTTCATGCTC
ACTAGTAGGTCACCAAAGCAGGCCCAAAACAAAAACCCTAGTAACATTGT
CGGTGGCCGGAGGCTGTTGTCGGATGATTTTCCGAGTTGGGTGTCCGGCG
CTGAAAGAAAGCTTCTAGAAGCTTCTGTGGGTGACTTAGAAGCACATRCT
GTGGTGGCTTTGGATGGGAGTGGTACGCACAAGAGTATCGGTGAAGCACT
TGGGTTGGTGGCCTCATTGGCTGAGAGTGGAGGAGGTGGCAGRTCTGTAA
TTCATGTAAAAGCTGGRACTTATCATGAATATATTAAAATACCAACGAAG
CAGAAGAACGTTATGTTAATTGGTGATGGTTTGGGGACGACGATTRTYGT
GGGCGATAGGAACTCTGATGATGGTTGGACCACTTTCSAGTCTGCYACRG
TTGCTGCTATGGGAGACGGCTTTATAGCTCGTGACATAACGTTTGAGAAT
AATGCCGGTCCATCAAAGCACCAAGCGGTTGCCCTCCGAGTCGGCGCTGA
CAAGTCAGTGATTTTCCGATGCTCCATYGTCGGYTACCAAGACACCCTYT
ACACTCACTCCAAGCGCCAGTTCTACAGAGACACCCAAATCTACGGAACA
GTTGATTTCATATTTGGAAACTCAGCAGCAGTTTTCCAGAACTGCAACAT
TTACGCAAGAAAACCCGCTTCAACCGGTCTCAAAAATTTTGTCACAGCAC
AAGGTAGAACCAGCCCGGATCAGAACACTGGAATTTCGATTCATAACTGC
AAAATTTCAGCTGCTTCGGATCTTGCTCCGGTGAAATCCAAGTACGAGAC
GTATCTTGGGAGGCCATGGAAGCAGTATTCAAGAACAGTTATCATGCAGT
CTTACTTGGATGACTCAATCAGTAGGGCTGGTTGGTCACCTTGGTCAGGT
GGGTTTGCTTTAAACACATTGTATTATGGTGAGTATTCAAATTATGGGCC
TGGGGCTTCAACTTCGGGTCGGGTCCGGTGGCCGGGATATCATGCATCAC
TTACACCGGTTGCTGCACAAGGCTTCACTGTTAGCGGTTTCATCTCTGGG
AACCTTTGGTTGCCTTCCACTGGGGTTTCTTTTGATTCGGGACTTCATTA
A
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
IPR006501Pectinesterase_inhib_dom
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR018040Pectinesterase_Tyr_AS
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
GO:0004857enzyme inhibitor activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification