MDP0000291221, MDP0000291221 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000291221
Unique NameMDP0000291221
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1599
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000291221_exon_1MDP0000291221_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000291221MDP0000291221Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004158Protein of unknown function DUF247, plantPFAMPF03140DUF247coord: 104..516
score: 4.8e
NoneNo IPR availableSEGsegsegcoord: 42..51
score
NoneNo IPR availableSEGsegsegcoord: 71..82
score
NoneNo IPR availableSEGsegsegcoord: 16..26
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000291221 ID=MDP0000291221; Name=MDP0000291221; organism=Malus x domestica; type=mRNA; length=1599bp
ATGGTTGCTGTGTTCAACAAGGAGCTCCTGAGCTGGTACCTCATTACAGT
CAAACTCCGAGAAACAGTGGAATCCGGAATTGCAAAGACTTCTACTTCCA
CAAACAGATCAATTGAACTGCCACACCAACATGTTCATCAGCAGCAGCAG
CARCCGTCTGAGCCACTCCATATTGTGATCCAAAATGGTTGTGATCAGAA
ATTTGAAGAGGGACCCAAGTCGCCAGAATCCGAGTGGAYGATCAACATCA
AAGACAAACTTGATCAGGCCGGCCAGGACGACGCGGTGAGTTCGTGGGCA
AAGCACTGCATTTACAAAGTCCCACATTACTTGAGAGAAGGTGATGATAA
AGCCATTGTGCCTCAGATTGTGTCATTGGGGCCTTACCATCACGGCAAGA
GGCGTCTTCGCCAAATGGACCGCCATAAATGGCGGTCGCTTCTTCGGATG
CTGAAGCGGACAAACCAGTGCATAGAGCTGTATCTTAATTCTATAAAAGA
AGTTGAAGAAAAGGCTCGAGCTTGCTATGAAGGGCCAGCTGCAATGGGGC
TCAGCAGCAATGAGTTCGTTGAAATGATGGTGCTTGACGGTTGCTTTGTG
CTCGAGCTGTTTCGCGGCGTTGGTGAGGGATTTAAGCAACTAGGTTACCC
TCGAAATGATCCCATATTTGCAATGCGTGGGTCAATGCATTCGATTCAGA
GGGACATGATCATGCTTGAGAATCAGCTTCCGCTTTTCATTCTTGATCGG
TTATTAGGGCTGCAGTTGGGAGATCCTGAGCAGAAAGGACTTGTAGCTAA
GCTAGCACTTCGGTTTTTCGATCCATTGATGCCAACTGACGAGCCATTGA
CAAAGAGCGATAGGAACAAACTCGAGTCATCGCTTGCATACGCAACCACG
TTTGATCCGCTGTCTGAACAAGGTGGCCTTCATTGTCTTGACGTGTTCAG
GCGAAGTCTATTGCGCACGGGGCTTCAGGCTGTGCCGAGAGTTTGGATCA
AGAGATGGTCACACTCGAATCGGGTTGCAGATAAACGAAGGCAGCAATTG
ATTCATTGCGTTACGGAGCTCAAGGAGGCTGGGATCAAGTTCAAGAAAAG
GAAGACGGATAGGTTTTGGGACGTGAAATTCGAGAATGGGATTCTTAAAA
TTCCCAGGCTCTTGATCCATGATGGTACCAAGTCTCTCTTCCTCAATCTG
ATTGCGTTTGAGCAGTGTCATCTGGATTGCAGCAATGACATAACATCCTA
CGTGATCTTCATGGACAACTTGATCAACTCTCCACAAGATGTAGGGTACC
TCCATTATTGTGGAATAATTGAGCACTGGCTTGGCAGCGACGATGAGGTC
GCTGACCTCTTTAACCGCCTCTGTCAAGAGGTGGTTTTCGATATCAATGA
CAGTTATCTCTCCCCATTGTCAGCGGATGTGAACCGCTACTACGACCACA
GGTGGAACGCTTGGCGTGCCAGCTTAAAACACAACTACTTCAGCAATCCC
TGGGCCATCCTCTCCTTCATCGCCGCTGTCGTGTTGTTGTTTCTCACTTT
CGCACAGACCTTCTACGGAGTCTATGGCTATTACAGGCCGCCGAACTAA
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protein sequence of MDP0000291221

>MDP0000291221 ID=MDP0000291221; Name=MDP0000291221; organism=Malus x domestica; type=polypeptide; length=532bp
MVAVFNKELLSWYLITVKLRETVESGIAKTSTSTNRSIELPHQHVHQQQQ
QPSEPLHIVIQNGCDQKFEEGPKSPESEWXINIKDKLDQAGQDDAVSSWA
KHCIYKVPHYLREGDDKAIVPQIVSLGPYHHGKRRLRQMDRHKWRSLLRM
LKRTNQCIELYLNSIKEVEEKARACYEGPAAMGLSSNEFVEMMVLDGCFV
LELFRGVGEGFKQLGYPRNDPIFAMRGSMHSIQRDMIMLENQLPLFILDR
LLGLQLGDPEQKGLVAKLALRFFDPLMPTDEPLTKSDRNKLESSLAYATT
FDPLSEQGGLHCLDVFRRSLLRTGLQAVPRVWIKRWSHSNRVADKRRQQL
IHCVTELKEAGIKFKKRKTDRFWDVKFENGILKIPRLLIHDGTKSLFLNL
IAFEQCHLDCSNDITSYVIFMDNLINSPQDVGYLHYCGIIEHWLGSDDEV
ADLFNRLCQEVVFDINDSYLSPLSADVNRYYDHRWNAWRASLKHNYFSNP
WAILSFIAAVVLLFLTFAQTFYGVYGYYRPPN
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mRNA from alignment at chr2:16874266..16875864+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000291221 ID=MDP0000291221; Name=MDP0000291221; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr2:16874266..16875864+ (Malus x domestica
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mRNA from alignment at MDC011321.82:10270..11868+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000291221 ID=MDP0000291221; Name=MDP0000291221; organism=Malus x domestica; type=mRNA; length=1599bp; location=Sequence derived from: MDC011321.82:10270..11868+ (Malus x domestica
ATGGTTGCTGTGTTCAACAAGGAGCTCCTGAGCTGGTACCTCATTACAGT
CAAACTCCGAGAAACAGTGGAATCCGGAATTGCAAAGACTTCTACTTCCA
CAAACAGATCAATTGAACTGCCACACCAACATGTTCATCAGCAGCAGCAG
CARCCGTCTGAGCCACTCCATATTGTGATCCAAAATGGTTGTGATCAGAA
ATTTGAAGAGGGACCCAAGTCGCCAGAATCCGAGTGGAYGATCAACATCA
AAGACAAACTTGATCAGGCCGGCCAGGACGACGCGGTGAGTTCGTGGGCA
AAGCACTGCATTTACAAAGTCCCACATTACTTGAGAGAAGGTGATGATAA
AGCCATTGTGCCTCAGATTGTGTCATTGGGGCCTTACCATCACGGCAAGA
GGCGTCTTCGCCAAATGGACCGCCATAAATGGCGGTCGCTTCTTCGGATG
CTGAAGCGGACAAACCAGTGCATAGAGCTGTATCTTAATTCTATAAAAGA
AGTTGAAGAAAAGGCTCGAGCTTGCTATGAAGGGCCAGCTGCAATGGGGC
TCAGCAGCAATGAGTTCGTTGAAATGATGGTGCTTGACGGTTGCTTTGTG
CTCGAGCTGTTTCGCGGCGTTGGTGAGGGATTTAAGCAACTAGGTTACCC
TCGAAATGATCCCATATTTGCAATGCGTGGGTCAATGCATTCGATTCAGA
GGGACATGATCATGCTTGAGAATCAGCTTCCGCTTTTCATTCTTGATCGG
TTATTAGGGCTGCAGTTGGGAGATCCTGAGCAGAAAGGACTTGTAGCTAA
GCTAGCACTTCGGTTTTTCGATCCATTGATGCCAACTGACGAGCCATTGA
CAAAGAGCGATAGGAACAAACTCGAGTCATCGCTTGCATACGCAACCACG
TTTGATCCGCTGTCTGAACAAGGTGGCCTTCATTGTCTTGACGTGTTCAG
GCGAAGTCTATTGCGCACGGGGCTTCAGGCTGTGCCGAGAGTTTGGATCA
AGAGATGGTCACACTCGAATCGGGTTGCAGATAAACGAAGGCAGCAATTG
ATTCATTGCGTTACGGAGCTCAAGGAGGCTGGGATCAAGTTCAAGAAAAG
GAAGACGGATAGGTTTTGGGACGTGAAATTCGAGAATGGGATTCTTAAAA
TTCCCAGGCTCTTGATCCATGATGGTACCAAGTCTCTCTTCCTCAATCTG
ATTGCGTTTGAGCAGTGTCATCTGGATTGCAGCAATGACATAACATCCTA
CGTGATCTTCATGGACAACTTGATCAACTCTCCACAAGATGTAGGGTACC
TCCATTATTGTGGAATAATTGAGCACTGGCTTGGCAGCGACGATGAGGTC
GCTGACCTCTTTAACCGCCTCTGTCAAGAGGTGGTTTTCGATATCAATGA
CAGTTATCTCTCCCCATTGTCAGCGGATGTGAACCGCTACTACGACCACA
GGTGGAACGCTTGGCGTGCCAGCTTAAAACACAACTACTTCAGCAATCCC
TGGGCCATCCTCTCCTTCATCGCCGCTGTCGTGTTGTTGTTTCTCACTTT
CGCACAGACCTTCTACGGAGTCTATGGCTATTACAGGCCGCCGAACTAA
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Coding sequence (CDS) from alignment at MDC011321.82:10270..11868+

>MDP0000291221 ID=MDP0000291221; Name=MDP0000291221; organism=Malus x domestica; type=CDS; length=1599bp; location=Sequence derived from: MDC011321.82:10270..11868+ (Malus x domestica
ATGGTTGCTGTGTTCAACAAGGAGCTCCTGAGCTGGTACCTCATTACAGT
CAAACTCCGAGAAACAGTGGAATCCGGAATTGCAAAGACTTCTACTTCCA
CAAACAGATCAATTGAACTGCCACACCAACATGTTCATCAGCAGCAGCAG
CARCCGTCTGAGCCACTCCATATTGTGATCCAAAATGGTTGTGATCAGAA
ATTTGAAGAGGGACCCAAGTCGCCAGAATCCGAGTGGAYGATCAACATCA
AAGACAAACTTGATCAGGCCGGCCAGGACGACGCGGTGAGTTCGTGGGCA
AAGCACTGCATTTACAAAGTCCCACATTACTTGAGAGAAGGTGATGATAA
AGCCATTGTGCCTCAGATTGTGTCATTGGGGCCTTACCATCACGGCAAGA
GGCGTCTTCGCCAAATGGACCGCCATAAATGGCGGTCGCTTCTTCGGATG
CTGAAGCGGACAAACCAGTGCATAGAGCTGTATCTTAATTCTATAAAAGA
AGTTGAAGAAAAGGCTCGAGCTTGCTATGAAGGGCCAGCTGCAATGGGGC
TCAGCAGCAATGAGTTCGTTGAAATGATGGTGCTTGACGGTTGCTTTGTG
CTCGAGCTGTTTCGCGGCGTTGGTGAGGGATTTAAGCAACTAGGTTACCC
TCGAAATGATCCCATATTTGCAATGCGTGGGTCAATGCATTCGATTCAGA
GGGACATGATCATGCTTGAGAATCAGCTTCCGCTTTTCATTCTTGATCGG
TTATTAGGGCTGCAGTTGGGAGATCCTGAGCAGAAAGGACTTGTAGCTAA
GCTAGCACTTCGGTTTTTCGATCCATTGATGCCAACTGACGAGCCATTGA
CAAAGAGCGATAGGAACAAACTCGAGTCATCGCTTGCATACGCAACCACG
TTTGATCCGCTGTCTGAACAAGGTGGCCTTCATTGTCTTGACGTGTTCAG
GCGAAGTCTATTGCGCACGGGGCTTCAGGCTGTGCCGAGAGTTTGGATCA
AGAGATGGTCACACTCGAATCGGGTTGCAGATAAACGAAGGCAGCAATTG
ATTCATTGCGTTACGGAGCTCAAGGAGGCTGGGATCAAGTTCAAGAAAAG
GAAGACGGATAGGTTTTGGGACGTGAAATTCGAGAATGGGATTCTTAAAA
TTCCCAGGCTCTTGATCCATGATGGTACCAAGTCTCTCTTCCTCAATCTG
ATTGCGTTTGAGCAGTGTCATCTGGATTGCAGCAATGACATAACATCCTA
CGTGATCTTCATGGACAACTTGATCAACTCTCCACAAGATGTAGGGTACC
TCCATTATTGTGGAATAATTGAGCACTGGCTTGGCAGCGACGATGAGGTC
GCTGACCTCTTTAACCGCCTCTGTCAAGAGGTGGTTTTCGATATCAATGA
CAGTTATCTCTCCCCATTGTCAGCGGATGTGAACCGCTACTACGACCACA
GGTGGAACGCTTGGCGTGCCAGCTTAAAACACAACTACTTCAGCAATCCC
TGGGCCATCCTCTCCTTCATCGCCGCTGTCGTGTTGTTGTTTCTCACTTT
CGCACAGACCTTCTACGGAGTCTATGGCTATTACAGGCCGCCGAACTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004158DUF247_pln