MDP0000296741, MDP0000296741 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000296741
Unique NameMDP0000296741
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1963
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000296741_exon_1MDP0000296741_exon_1Malus x domesticaCDS
MDP0000296741_exon_2MDP0000296741_exon_2Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000296741MDP0000296741Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 233..519
score: 1.4e
IPR006501Pectinesterase inhibitorGENE3D1.20.140.40no descriptioncoord: 28..186
score: 9.5
IPR006501Pectinesterase inhibitorPFAMPF04043PMEIcoord: 28..182
score: 6.4
IPR006501Pectinesterase inhibitorSMARTSM00856Plant invertase/pectin methylesterase inhibicoord: 25..182
score: 3.2
IPR006501Pectinesterase inhibitorTIGRFAMsTIGR01614PME_inhib: pectinesterase inhibitor domaincoord: 6..187
score: 8
IPR006501Pectinesterase inhibitorSUPERFAMILY101148Plant invertase/pectin methylesterase inhibitorcoord: 27..189
score: 2.8
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 225..534
score: 1.2e
IPR012334Pectin lyase foldGENE3D2.160.20.10no descriptioncoord: 232..533
score: 3.8e
IPR018040Pectinesterase, active sitePROSITEPS00503PECTINESTERASE_2coord: 376..385
score
IPR018040Pectinesterase, active sitePROSITEPS00800PECTINESTERASE_1coord: 257..276
score
NoneNo IPR availablePANTHERPTHR22931FAMILY NOT NAMEDcoord: 26..471
score: 8
NoneNo IPR availablePANTHERPTHR22931:SF5METHYLESTERASE INHIBITOR-RELATEDcoord: 26..471
score: 8
NoneNo IPR availableSEGsegsegcoord: 7..17
score
NoneNo IPR availableSEGsegsegcoord: 3..11
score: NAcoord: 47..56
score
NoneNo IPR availableSEGsegsegcoord: 22..38
score
NoneNo IPR availableSEGsegsegcoord: 24..47
score
NoneNo IPR availableSEGsegsegcoord: 23..37
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000296741 ID=MDP0000296741; Name=MDP0000296741; organism=Malus x domestica; type=mRNA; length=1963bp
ATGGCCTTAGCCAATTTTCTGCTTCTTCTTCTTTCACTTTCATGTTCTTC
TTATGGGGTTACTTCCTACCCTTCCATTCGATCCATGGTTACGCAAACTT
GCACTGATGTCGATGACCGAAACTCGTGCCTCACAAACGTGCAAGCCGAG
CTCCAAAAAAGGGGGCCTCAAACTCAAGATTCGGTTTCAATCCTAACTGC
TGCTCTTACGCATACGCTCAATGAAACAAAAAATGCTATCCAAATCATCA
CAAAGTTCAACTCTTTGCCCAGAAGTTACAGAGAGAGTGTAGCAATTGAG
GACTGCAAGGAGCTCCTAGACTACTCCTTCTCCGAGTTGGCTTGGTCTCT
AGGGGAAATGATCAAAATTCGCGGCGGCGACACAAATGTTCACTACGAAG
GAAACCTAAAAGCTTGGCTTAGTGCTGCCTTAAGTAACCAAGATACCTGC
CTTGAGGGTTTTGAAGGAACTGACCGACGCTTCGAAAGTTTCGTTAGGGG
AAGTGTGAAGCAAGTGACACAGCTCATTGGTAATGTTCTTACCTTATATA
CTCAACTACACAGCTTGCCCTCTAAGCCTCCTAGGCATCATGGTCCCCCA
ACGAATAAAAGTTCGCCAGGGGATTATTTCCCGGCTTGGATGAGTGAGGA
AGATCAAGAGCTGGTTAAATCGAATCCAAAATCGGGTGTGAATCATGCTG
TTGTGGCAGCAGATGGGAGTGGACAGTACCGTACGATCACAGAAGCTGTC
AATGAAGCTCCAAACTACAGCCCTAGCAGGTACGTTATATATGTGAAGAA
GGGAATTTATAGGGAAAACATCGAAATGAAGAAGAACAAAACCAATATTA
TGTTTGTTGGGGATGGGATTGGACAAACTATCATAACGGGTAACCGGAGT
TTCATGCAAGGATGGACTACGTTTAGAACTGCAACAGTCGGTAAGTTACA
TTATGCTTTTCATGTTGAGTGCACGTATTTTTCACACATAATATATAGAA
AAATCTAATATTGTTAGACTATGAATCAAGCTATAAAAAGGGATCATCTC
TGGATCCCTTCCACCAAATCCACCCCATCAATCAATTCAGGTTTTTAAAA
TTTGATCTAACGGCTACAAACAAGGAGTTCCTTTAAAAGTTATAATAACT
TTAGCCGTTGATCAAATTTTAAGGGTTTGGATTGATTGATGTGGTGGATT
TGGTGAAAGGGATCCGGCCTCCGGCAACATATTTATTGTCTATTCCGAGA
TGATTCAAATGACGTATTTTCTCATGCATACTATGTTTCATACAGCCGTA
TCCGGAAGGGGATTCATAGCAAGGAACCTGACAATTCGCAACACAGCCGC
CCCTCAAAACCACCAAGCCGTAGCGCTAAGAGTCGACTCCGACCAGTCGG
CCTTCTTCCAGTGCAGCGTGGAGGGTTACCAAGACACCCTCTACGCTCAC
TCGCTCCGCCAATTCTTCCGTGAGTGCACCATCTACGGCACCGTAGACTT
CATTTTTGGCAATGGGGCTGCGGTCCTCCAAAACTGCAAAATCTACACAA
GGGTCCCACTCCCACAACAAAAAATCACAATCACTGCCCAAGGTAGAAAA
AGCCCACATCAAAGCACAGGGTTTGCAATCCAGGACAGTTTTGTTCTGGC
CACCCAGCCGACTTATTTGGGTAGGCCATGGAAGAAATATTCCAGAACTG
TTTATATGAACACTTATATGAGTAGGTTGGTCCAGCCCAGAGGGTGGCTT
GAGTGGAATGGGGATTTTGCTTTGGGCACGTTGTGGTATGGTGAGTATAA
GAATTATGGGCCGGGTGCAGCTATGTCGGGTCGGGTCAAATGGCGTGGTT
ACCATATACTCAGGGATGCTGCTGCGGCGAGCTTCTTCACCGTGGGGAGG
TTTATTGATGGGATGGCTTGGTTGCCGTCGACCGGTATCAAGTTTACAGC
AGGGTTTGAGTAA
back to top

protein sequence of MDP0000296741

>MDP0000296741 ID=MDP0000296741; Name=MDP0000296741; organism=Malus x domestica; type=polypeptide; length=535bp
MALANFLLLLLSLSCSSYGVTSYPSIRSMVTQTCTDVDDRNSCLTNVQAE
LQKRGPQTQDSVSILTAALTHTLNETKNAIQIITKFNSLPRSYRESVAIE
DCKELLDYSFSELAWSLGEMIKIRGGDTNVHYEGNLKAWLSAALSNQDTC
LEGFEGTDRRFESFVRGSVKQVTQLIGNVLTLYTQLHSLPSKPPRHHGPP
TNKSSPGDYFPAWMSEEDQELVKSNPKSGVNHAVVAADGSGQYRTITEAV
NEAPNYSPSRYVIYVKKGIYRENIEMKKNKTNIMFVGDGIGQTIITGNRS
FMQGWTTFRTATVAVSGRGFIARNLTIRNTAAPQNHQAVALRVDSDQSAF
FQCSVEGYQDTLYAHSLRQFFRECTIYGTVDFIFGNGAAVLQNCKIYTRV
PLPQQKITITAQGRKSPHQSTGFAIQDSFVLATQPTYLGRPWKKYSRTVY
MNTYMSRLVQPRGWLEWNGDFALGTLWYGEYKNYGPGAAMSGRVKWRGYH
ILRDAAAASFFTVGRFIDGMAWLPSTGIKFTAGFE
back to top

mRNA from alignment at chr12:27934919..27936881+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000296741 ID=MDP0000296741; Name=MDP0000296741; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr12:27934919..27936881+ (Malus x domestica
back to top

mRNA from alignment at MDC011810.169:42499..44461+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000296741 ID=MDP0000296741; Name=MDP0000296741; organism=Malus x domestica; type=mRNA; length=1963bp; location=Sequence derived from: MDC011810.169:42499..44461+ (Malus x domestica
ATGGCCTTAGCCAATTTTCTGCTTCTTCTTCTTTCACTTTCATGTTCTTC
TTATGGGGTTACTTCCTACCCTTCCATTCGATCCATGGTTACGCAAACTT
GCACTGATGTCGATGACCGAAACTCGTGCCTCACAAACGTGCAAGCCGAG
CTCCAAAAAAGGGGGCCTCAAACTCAAGATTCGGTTTCAATCCTAACTGC
TGCTCTTACGCATACGCTCAATGAAACAAAAAATGCTATCCAAATCATCA
CAAAGTTCAACTCTTTGCCCAGAAGTTACAGAGAGAGTGTAGCAATTGAG
GACTGCAAGGAGCTCCTAGACTACTCCTTCTCCGAGTTGGCTTGGTCTCT
AGGGGAAATGATCAAAATTCGCGGCGGCGACACAAATGTTCACTACGAAG
GAAACCTAAAAGCTTGGCTTAGTGCTGCCTTAAGTAACCAAGATACCTGC
CTTGAGGGTTTTGAAGGAACTGACCGACGCTTCGAAAGTTTCGTTAGGGG
AAGTGTGAAGCAAGTGACACAGCTCATTGGTAATGTTCTTACCTTATATA
CTCAACTACACAGCTTGCCCTCTAAGCCTCCTAGGCATCATGGTCCCCCA
ACGAATAAAAGTTCGCCAGGGGATTATTTCCCGGCTTGGATGAGTGAGGA
AGATCAAGAGCTGGTTAAATCGAATCCAAAATCGGGTGTGAATCATGCTG
TTGTGGCAGCAGATGGGAGTGGACAGTACCGTACGATCACAGAAGCTGTC
AATGAAGCTCCAAACTACAGCCCTAGCAGGTACGTTATATATGTGAAGAA
GGGAATTTATAGGGAAAACATCGAAATGAAGAAGAACAAAACCAATATTA
TGTTTGTTGGGGATGGGATTGGACAAACTATCATAACGGGTAACCGGAGT
TTCATGCAAGGATGGACTACGTTTAGAACTGCAACAGTCGGTAAGTTACA
TTATGCTTTTCATGTTGAGTGCACGTATTTTTCACACATAATATATAGAA
AAATCTAATATTGTTAGACTATGAATCAAGCTATAAAAAGGGATCATCTC
TGGATCCCTTCCACCAAATCCACCCCATCAATCAATTCAGGTTTTTAAAA
TTTGATCTAACGGCTACAAACAAGGAGTTCCTTTAAAAGTTATAATAACT
TTAGCCGTTGATCAAATTTTAAGGGTTTGGATTGATTGATGTGGTGGATT
TGGTGAAAGGGATCCGGCCTCCGGCAACATATTTATTGTCTATTCCGAGA
TGATTCAAATGACGTATTTTCTCATGCATACTATGTTTCATACAGCCGTA
TCCGGAAGGGGATTCATAGCAAGGAACCTGACAATTCGCAACACAGCCGC
CCCTCAAAACCACCAAGCCGTAGCGCTAAGAGTCGACTCCGACCAGTCGG
CCTTCTTCCAGTGCAGCGTGGAGGGTTACCAAGACACCCTCTACGCTCAC
TCGCTCCGCCAATTCTTCCGTGAGTGCACCATCTACGGCACCGTAGACTT
CATTTTTGGCAATGGGGCTGCGGTCCTCCAAAACTGCAAAATCTACACAA
GGGTCCCACTCCCACAACAAAAAATCACAATCACTGCCCAAGGTAGAAAA
AGCCCACATCAAAGCACAGGGTTTGCAATCCAGGACAGTTTTGTTCTGGC
CACCCAGCCGACTTATTTGGGTAGGCCATGGAAGAAATATTCCAGAACTG
TTTATATGAACACTTATATGAGTAGGTTGGTCCAGCCCAGAGGGTGGCTT
GAGTGGAATGGGGATTTTGCTTTGGGCACGTTGTGGTATGGTGAGTATAA
GAATTATGGGCCGGGTGCAGCTATGTCGGGTCGGGTCAAATGGCGTGGTT
ACCATATACTCAGGGATGCTGCTGCGGCGAGCTTCTTCACCGTGGGGAGG
TTTATTGATGGGATGGCTTGGTTGCCGTCGACCGGTATCAAGTTTACAGC
AGGGTTTGAGTAA
back to top

Coding sequence (CDS) from alignment at MDC011810.169:42499..44461+

>MDP0000296741 ID=MDP0000296741; Name=MDP0000296741; organism=Malus x domestica; type=CDS; length=1608bp; location=Sequence derived from: MDC011810.169:42499..44461+ (Malus x domestica
ATGGCCTTAGCCAATTTTCTGCTTCTTCTTCTTTCACTTTCATGTTCTTC
TTATGGGGTTACTTCCTACCCTTCCATTCGATCCATGGTTACGCAAACTT
GCACTGATGTCGATGACCGAAACTCGTGCCTCACAAACGTGCAAGCCGAG
CTCCAAAAAAGGGGGCCTCAAACTCAAGATTCGGTTTCAATCCTAACTGC
TGCTCTTACGCATACGCTCAATGAAACAAAAAATGCTATCCAAATCATCA
CAAAGTTCAACTCTTTGCCCAGAAGTTACAGAGAGAGTGTAGCAATTGAG
GACTGCAAGGAGCTCCTAGACTACTCCTTCTCCGAGTTGGCTTGGTCTCT
AGGGGAAATGATCAAAATTCGCGGCGGCGACACAAATGTTCACTACGAAG
GAAACCTAAAAGCTTGGCTTAGTGCTGCCTTAAGTAACCAAGATACCTGC
CTTGAGGGTTTTGAAGGAACTGACCGACGCTTCGAAAGTTTCGTTAGGGG
AAGTGTGAAGCAAGTGACACAGCTCATTGGTAATGTTCTTACCTTATATA
CTCAACTACACAGCTTGCCCTCTAAGCCTCCTAGGCATCATGGTCCCCCA
ACGAATAAAAGTTCGCCAGGGGATTATTTCCCGGCTTGGATGAGTGAGGA
AGATCAAGAGCTGGTTAAATCGAATCCAAAATCGGGTGTGAATCATGCTG
TTGTGGCAGCAGATGGGAGTGGACAGTACCGTACGATCACAGAAGCTGTC
AATGAAGCTCCAAACTACAGCCCTAGCAGGTACGTTATATATGTGAAGAA
GGGAATTTATAGGGAAAACATCGAAATGAAGAAGAACAAAACCAATATTA
TGTTTGTTGGGGATGGGATTGGACAAACTATCATAACGGGTAACCGGAGT
TTCATGCAAGGATGGACTACGTTTAGAACTGCAACAGTCGCCGTATCCGG
AAGGGGATTCATAGCAAGGAACCTGACAATTCGCAACACAGCCGCCCCTC
AAAACCACCAAGCCGTAGCGCTAAGAGTCGACTCCGACCAGTCGGCCTTC
TTCCAGTGCAGCGTGGAGGGTTACCAAGACACCCTCTACGCTCACTCGCT
CCGCCAATTCTTCCGTGAGTGCACCATCTACGGCACCGTAGACTTCATTT
TTGGCAATGGGGCTGCGGTCCTCCAAAACTGCAAAATCTACACAAGGGTC
CCACTCCCACAACAAAAAATCACAATCACTGCCCAAGGTAGAAAAAGCCC
ACATCAAAGCACAGGGTTTGCAATCCAGGACAGTTTTGTTCTGGCCACCC
AGCCGACTTATTTGGGTAGGCCATGGAAGAAATATTCCAGAACTGTTTAT
ATGAACACTTATATGAGTAGGTTGGTCCAGCCCAGAGGGTGGCTTGAGTG
GAATGGGGATTTTGCTTTGGGCACGTTGTGGTATGGTGAGTATAAGAATT
ATGGGCCGGGTGCAGCTATGTCGGGTCGGGTCAAATGGCGTGGTTACCAT
ATACTCAGGGATGCTGCTGCGGCGAGCTTCTTCACCGTGGGGAGGTTTAT
TGATGGGATGGCTTGGTTGCCGTCGACCGGTATCAAGTTTACAGCAGGGT
TTGAGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
IPR006501Pectinesterase_inhib_dom
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR018040Pectinesterase_Tyr_AS
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
GO:0004857enzyme inhibitor activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification