MDP0000298648, MDP0000298648 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000298648
Unique Name	MDP0000298648
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	6086

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr12	chromosome	chr12:4622649..4628734 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC015103.639	contig	MDC015103.639:1389..7474 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000298648_exon_1	MDP0000298648_exon_1	Malus x domestica	CDS
MDP0000298648_exon_2	MDP0000298648_exon_2	Malus x domestica	CDS
MDP0000298648_exon_3	MDP0000298648_exon_3	Malus x domestica	CDS
MDP0000298648_exon_4	MDP0000298648_exon_4	Malus x domestica	CDS
MDP0000298648_exon_5	MDP0000298648_exon_5	Malus x domestica	CDS
MDP0000298648_exon_6	MDP0000298648_exon_6	Malus x domestica	CDS
MDP0000298648_exon_7	MDP0000298648_exon_7	Malus x domestica	CDS
MDP0000298648_exon_8	MDP0000298648_exon_8	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000298648	MDP0000298648	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	PFAM	PF00443	UCH	coord: 276..387 score: 8.5
IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	PROFILE	PS50235	UCH_2_3	coord: 278..388 score: 10
IPR002083	MATH	PFAM	PF00917	MATH	coord: 140..259 score: 9.9
IPR002083	MATH	SMART	SM00061	meprin and TRAF homology	coord: 135..239 score: 3.9
IPR002083	MATH	PROFILE	PS50144	MATH	coord: 133..258 score: 37
IPR008974	TRAF-like	SUPERFAMILY	49599	TRAF domain-like	coord: 130..270 score: 7.4
IPR013322	TRAF-type	GENE3D	2.60.210.10	no description	coord: 131..260 score: 2.4
IPR018200	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	PROSITE	PS00972	UCH_2_1	coord: 279..294 score
None	No IPR available	COIL	coil	coiled-coil	coord: 11..20 score: NAcoord: 21..28 score: NAcoord: 29..39 score
None	No IPR available	PANTHER	PTHR24006	FAMILY NOT NAMED	coord: 211..387 score: 6
None	No IPR available	PANTHER	PTHR24006:SF110	SUBFAMILY NOT NAMED	coord: 211..387 score: 6
None	No IPR available	SEG	seg	seg	coord: 47..69 score: NAcoord: 77..88 score: NAcoord: 252..260 score
None	No IPR available	SUPERFAMILY	54001	Cysteine proteinases	coord: 272..387 score: 4.5
None	No IPR available	SEG	seg	seg	coord: 40..54 score
None	No IPR available	SEG	seg	seg	coord: 78..89 score: NAcoord: 97..113 score
None	No IPR available	SEG	seg	seg	coord: 3..13 score: NAcoord: 39..52 score: NAcoord: 57..76 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:4622649..4628734-
mRNA from alignment at MDC015103.639:1389..7474-
coding sequence from alignment at MDC015103.639:1389..7474-

mRNA sequence

>MDP0000298648 ID=MDP0000298648; Name=MDP0000298648; organism=Malus x domestica; type=mRNA; length=6086bp
ATGCAGAAATGCCAAGACAGAAACRACGTCGTCGCCATATATGATGCCAA
GGTAACAWAACTTGAGGCTGAACTAGCYCGARTTAATGCACAACTGGTGC
AAGTAAAGGCATAACGAGCTCAAGGAATGGCGRATARCTCTTTAAAATAT
GAAAACTTACCTTGTTGTTAYAAAAGCRTGGCTCTRTTAGAACCTAGGYT
GTCGGGCAACTTAATTTGGTATCGAATTTGCTATCCAYGAGATTTGAACC
TAAGACCTATCACTTCGAAGTGAAGAGGAATACCATCAGATTTGACTCAT
AAGTTTGTATGAACATGCAAAAGAAGGGAACAAGTCGTGCAAAATTTAGG
TAGCCTGTTTCCTTACGTTGCTCKAGTTTRAGTGAGAAGCAAGGTGATTG
TATTGATGGGTATTTTTTTTTGGATGAATCTAGGATATCCCCCKCACATA
GGCAATGACCAATCCTCGAGCCGGGTCGGACCCCATTCRRGGGGCAAGCT
TTTCCAATGTTGGCTTCTCCATTCACAAGGCTTGAACTCGAGACCTTGCT
TAAGAAGAACAAGCTCCTTACCACTTAAACCACCAARCATTGGTGTTGAT
GGGTATTTTTCGTTTACTCTCCTACCCYACCTCGTTTGCTTACTCCCAAA
AAATTTRTGTCTTTGGCTTAGTCTGTGTCTTGCTAAAAAGCCAATCTTTG
TTTAACAACCACACATTGTCTAACCAACTCTTTCTTGCGGAGGAGTAGCG
GCCGATCTATCTCATGGCAAAAGGAATTGGCAGAGTATGCAAGCTAGACT
TTGAAGTMAAAAATCCAAGGTTTTATAAATTGATGAAKGAAAAACCAACG
TGGTGGATGGGTCAAGCTYTGCATTTGCAATCGAATCATTATGACTACTA
GATGCTCAACRAAATGGCTCGATAAAGCTTTTTTGGTTGATATTATGACC
CTATTAACTAAACAATCTGGCTCTGCCACTTTCTGTGTGTATWTATTCAA
ATTTTAAAATGAAAGAAAGAGAAGTTGGAAAGAAATGTGAGAGAGAGAGA
GAAAAAAAAGAAGAGAAAATGGGAGTTTTATTTTATTTTATTTTTTTCTT
AAATTAAAAGTGCTATGACTACATGTTAGTGAGGTTTGAAAAAAAAATAC
AACGAAGTTTGACTTGGGCGGAAACTTTATTCTTTTTAGGGTAAATCTCA
GTTTACTACCCTCAAGTTTCGTGGTTTTCAACATTTGGTACATCAAGTTT
TTTTCTTCCCAGAGTCATACCTAAAGTGTTAATTTTGGAACAGTCTCATA
CATCCGTGAGTCAAATTATCAAGTCTGCCGTTAACTAATAACGTGGCGCT
CATGTGGACAATGACTGGGCGCCACGTGTCAATAAAAAAAATTAAAATTA
TTAAACTATTAAAATAATTAATTAATTAAAATAAAATAATAAAAAAAAAA
CCAGAACCCCTTTGTCTTCCACACCCTGACCCCTTCCCTTATCCCTCCCT
TCTCTCCTTTGCACCTACCCCAACGTCTGCACATCCATCATTCCCCCTCC
CTCTTCGACTCCACCTACTCAACCCTCATCCTCTTCGACKGCCCAGTTTC
TCTGTACGCAACCACCACCTTCCCCCACCCCCATATTCCCCCACTGTTCT
TCACTCTCCCTACAGATTTGACAACCTCATCTCTCCAGATTTGCAGTCGA
TTTTTCTTGCTTGCTTGCTTGCTTCTTCCTAGGCCCCATGTCCAAACCAC
ATCCCCTCCCCTGTGGATCCACTCCCATCCCCTTCTCTATCGTCCCCACC
CCAATCTCATCTCCAATTCTCTTTCATAAATTCCATTCCTAACCCCACAA
ACATGGAGAAAGGAATACCCATCCCCACCRTCGTTCGAGCACTTTTCTCC
ATTCGTCGGAGACCTTGTCGCCTCTATCCTTGATCTGGAAATATACCTTA
TTGCTTCAAACTTGTTGTGATTTTGGGTTGAAGGTTGCAGAGGGAGTGAG
GTTGGTGATGGGAAGAGATTCTACAAATTGAAGCTACGGACCYTGCAAAG
GAATTAAAGCTTGCTACCGCAGGTCTGGGGCGTGGGAGGAGGGTGAGACT
GTGGGTGGCTAGGGCTCGTGGGTAAGGTGGTTGCACAGTGGGATTATTGT
AGTTGTTTCTAGGTTTCTATGGGGGCTGCTGCTGGAGAAACCATTGGGGT
AGGTCGCTTGGACTAAGAGGTGGTGGAGAAGATTGGAGGAGGCATGGAGA
TTTTAGAGCTGGATGGTGAGGGTGCGGGTATGGGTTGCATAGGAAAGAAA
GGAGGAGGGGGTTGGGGGAGGTAGAAGACGGGYWWTTTTTTTTTTTGKAA
TTTTKAATTTTGAATTTTTTTAACCCCTTCTAAAAAAAATCCACGTGGAC
CCCTTAATGACACGTGGTGCACARTCATTGTCTACATAGGCGYCACGTCA
TCAGTTAACGGCAGACTTAACAATTTAACTAACAGATGTATGAGACTGTC
CCAAAATTAACACTTTAGATATGATTCTGGGGCGAAAAAAACTTGATGTA
CCAAATGTTGAAAACCACAAAACTTGAGGGTAGTAAAMTGAGATTTACCC
TTCTTTTTAAATAAACGATATTATCTACATTAAGGGGGTAAGAGGGTGGG
GGAGTGGGTTAAGGCTCACAATGGGTGAGCCATAATAATGTGGTTCAAAT
TCGCCTTTGTTGAAAATCGAAYCTAATACCTCTCACTTATCAATGAAGAK
AAATACTATTAAACTGTATTACTAAATGACAATTTGGATGGAATTATATA
CTATATTTCATTTTTTGATGGAATACTAAACCGTCTTTTCACTTTTTTTC
AATTGATAAGGAAAATTTAATTAATAAGTAGTTTTGAAAATAAGTACCAT
ATTCATTATATGATGCTAAAAATGAGTCTCGATAAAAACTTTGTCAGAAA
TTTTAATCCTATCTAAGAATTATTTTTTTATTAATAAGTAGTTTAAATAA
CTTTTCCAGACCGAGTGGTGGATTGTATGAAAGTGGGAGAAGTCCAATAC
CAATTGTGTACAATTATTATAATTTATGACATCACCCACTTTRACAAAAG
CTTGAATACCAGTGTACGAGGAAAGATCACATACGTCATTCGCCAGTGCA
CGTGACCCTCTGGTGACTGCCACGTCATCTATTTAATCCCACCCAACCAT
CTCGCCCCAGGTGTCGGCCTCCCACTGGTCCTTCCACACGCTAAAGATCT
TACTCCTCTCATGTAAACCCACCGCACTCCGTCCTCCATTTCCCAAACTA
CCCCCGCCTTTTCACGAAATCCCCAATACGCCCCTCCCCTGGACTTTGCA
CCCAGCGGCTTGTCTCGGAGCCAGTTTCTTACGGGAGTGTCCCCTCCTTC
GCAAAACAAAGCCCCGCCTCTCTCCCCTYYCCCCCCCTTCCCCCYCTCTC
TCTCTSCCCCCGTCTTTCACTGGTATCGTTCGTCTCTCAGATTCGTCGAT
CGGACGGTTCGTTGMGCGGCAGCAATGACTATGATGACTCCTGCACCGTT
GGATGTACGTACCGACTCCTCTACATTTCCACTCTCGGTTTAATTTCATT
GGGTTTCGGCTTCGTTCTTCGTTTCTGATCGCCTATGGATCTTGGTGGCG
TTCGGCGGTTTCGAACTGGGATGAATTTTGGGAATTCACCGACTTAMAGT
GATTGATTTGCTAGGGTTATGATTCAGTAAGATAGGGTTAGGTTTTTCTC
GATCAGAGCTCTGATTTTTGTTTCTTTTGTTAGCAGCAGCAGCAAGAGGA
CGAAGAGATGCTTGTGCCGAACTCGGATTTGGTCGAAGGTCCTCAGCCAA
TGGAAGGTTTAATTTTTAGCAATTTTTCGATGAGTTACTGTTTGAATTTC
TTATGTTTGTGTTTATGGTGTGGTTTTGGAGCGTTATGTGTGGCGTAGTT
GATCTGAAACAATTGGTTTTTGTGCGAATTTGGCATCACAGGGTTTGATT
AGAGTGCAAGTGTTTGCATTTTCTTTAGGGTTTTGGTTTTGTTTTTTTGA
AATTTATGGTATTTGGTGTGTTGGTAGTAGCCCAAGTGGAGCCAGCTAGT
ACAGTTGATAGTCAACCAGTGGAGGATCCTCCAACGATGAAATTCACTTG
GACAATTGAGAACTTTACTAGGTTGAACATCAAGAAGCACTACTCTGACA
TGTTCGTAGTGGGCGGCTATAAATGGTATTTTTTCTTGTCTACCAGATGT
CAAAAACTGATTATAACGCTACTTAAGATTGGCTTATATTTGTAGGTGAT
TGGATTTTGAATTGCTTTTGGTTTGTTTGATCAGGCGGATACTAATATTT
CCCAAGGGAAACAATGTGGACTACTTGTCAATGTATTTGGATGTGGCAGA
TTCCGGGACATTGCCATATGGGTGGAGTAGATATGCACACTTCAGCTTGG
CTGTAGTTAATCATATCCATACCAAGTACTCAATAAGAAAGGGTATATTC
CTTTATTAGTCTTGTTTCTTTTTAGCATTCAAGTCTGTGCGTTTGCCTGG
TTGTCGTATTCTGTTTTCTTGTTTTCTTTCAGTGAGAGCTTTGCTTGTTG
TTGGGTAGTCATGGGCACCCAAGGCTTTTAATTAGAATTTATTATCCTTG
GAATGGACCTACCTAAATGTGACTACGGGACAGAGGTTCGGGGCCGAAGG
AGTAGAGGAAGACCTAGGAAAACTTTGGAAGAGACCCTAAGAAAAGACTT
GAGTACTTGGATCTAACGGAGGACATGACACAAATGAGCGCAATGGCGTT
CTAGGATTTAGCCGACCCCACTTAGTGGGAAAAGGCTTTGTTGTTGTTGT
TGTTGGAATGGACCTACCTGGCTTTCAACTTCATAGTTCTTGGGTGATGC
CATTTGAACGCAAACAATATCTAATTAACCACTCTAATCTTGTTATTGTG
AGCTTTTAATTCTAATTTTTCTCATTGAAATATCAAAACTATAAAGTAAA
GAAAATTCTTCCACCCCTTTCTCTCTAAAATCTTGGCTAACGGCAGCAGC
ACCATCGTCTGACTATGTGCCCATGGCGCCTTTGTTTGGGGATTTTTGAA
GTTTGAGAAAAAGTGAATAAAAAAATTATGGAKTAAAACGTACCAACAGA
TGTTAGAAGTAAATTGAAAACCAATAGATTATTCCTTTTAGGTATCTAGA
TGTCAAATATAGATTAACAGTAAAGGTAGAAACAGGAAGAATTTACTTGG
AAATTACGTGCAATTAAAGGGTGAATTTCTAGGTAATGAAAAGGCTAACT
GAATCAAGGGTTCCCATTTATTAAGGGATGAGCTTGAGGCGGGTCTGACG
ATCAGATATGGTAAAGAATTGTATTTTATTGRTGTGACCTATTCTAGAAC
ATTAATTTGCAATGCGTTTAACCAGAATTGAACAATCTTTAATCATATTC
AAGATGTTTTYTAAGACCTTTGTCGTTCATTGTTGTATGATGTTGCAGAC
ACTCAGCACCAATTCAATGCAAGAGAAAGTGACTGGGGATTCACTTCATT
CATGCCTCTTGGTGATCTTTATGATCCGAGTAGGGGATATCTGGTGAACG
ATACAGTTGTGGTTGAAGCTGAGGTTGCTGTCCGTAAGGTTCTAGATTAC
TGGTCATATGACTCGAAAAAGGAAACTGGTTATGTTGGGCTCAAGAATCA
GGGAGCAACTTGTTATATGAATTCTCTTCTCCAGACTTTGTACCATATAC
CGTACTTCAGAAAGGTCATTTACGTGATCTCCTGTTTTCATTGTAAGCTA
AACATGAATTGTTTGAATTTTCTATGAAAAGCATTATCTCAATTTTGGAC
TTACTTACCAGGCCGTGTATCATATGCCAACAACTGAGAATGACATGCCT
TCAGGAAGCATCCCTTTGGCGCTACAAAGTTTATTCTATAAGCTTCAATA
CAATGACAGCAGTGTTGCAACCAAAGAATTGACCAAATCCTTTGGATGGG
ATACATATGATTCTTTTATGCAACATGATGTGCAGGAACTTAATAGAGTT
CTTTGTGAAAAGCTTGAAGATAAAATGAAGGTATAG

protein sequence of MDP0000298648

>MDP0000298648 ID=MDP0000298648; Name=MDP0000298648; organism=Malus x domestica; type=polypeptide; length=388bp
MQKCQDRNXVVAIYDAKVTXLEAELARXNAQLVQILQIEATDXAKELKLA
TAGLGRGRRVRLWVARARGFVDRTVRXAAAMTMMTPAPLDQQQEDEEMLV
PNSDLVEGPQPMEVAQVEPASTVDSQPVEDPPTMKFTWTIENFTRLNIKK
HYSDMFVVGGYKWRILIFPKGNNVDYLSMYLDVADSGTLPYGWSRYAHFS
LAVVNHIHTKYSIRKDTQHQFNARESDWGFTSFMPLGDLYDPSRGYLVND
TVVVEAEVAVRKVLDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIP
YFRKHYLNFGLTYQAVYHMPTTENDMPSGSIPLALQSLFYKLQYNDSSVA
TKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKV

mRNA from alignment at chr12:4622649..4628734-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000298648 ID=MDP0000298648; Name=MDP0000298648; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr12:4622649..4628734- (Malus x domestica

mRNA from alignment at MDC015103.639:1389..7474-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000298648 ID=MDP0000298648; Name=MDP0000298648; organism=Malus x domestica; type=mRNA; length=6086bp; location=Sequence derived from: MDC015103.639:1389..7474- (Malus x domestica
ATGCAGAAATGCCAAGACAGAAACRACGTCGTCGCCATATATGATGCCAA
GGTAACAWAACTTGAGGCTGAACTAGCYCGARTTAATGCACAACTGGTGC
AAGTAAAGGCATAACGAGCTCAAGGAATGGCGRATARCTCTTTAAAATAT
GAAAACTTACCTTGTTGTTAYAAAAGCRTGGCTCTRTTAGAACCTAGGYT
GTCGGGCAACTTAATTTGGTATCGAATTTGCTATCCAYGAGATTTGAACC
TAAGACCTATCACTTCGAAGTGAAGAGGAATACCATCAGATTTGACTCAT
AAGTTTGTATGAACATGCAAAAGAAGGGAACAAGTCGTGCAAAATTTAGG
TAGCCTGTTTCCTTACGTTGCTCKAGTTTRAGTGAGAAGCAAGGTGATTG
TATTGATGGGTATTTTTTTTTGGATGAATCTAGGATATCCCCCKCACATA
GGCAATGACCAATCCTCGAGCCGGGTCGGACCCCATTCRRGGGGCAAGCT
TTTCCAATGTTGGCTTCTCCATTCACAAGGCTTGAACTCGAGACCTTGCT
TAAGAAGAACAAGCTCCTTACCACTTAAACCACCAARCATTGGTGTTGAT
GGGTATTTTTCGTTTACTCTCCTACCCYACCTCGTTTGCTTACTCCCAAA
AAATTTRTGTCTTTGGCTTAGTCTGTGTCTTGCTAAAAAGCCAATCTTTG
TTTAACAACCACACATTGTCTAACCAACTCTTTCTTGCGGAGGAGTAGCG
GCCGATCTATCTCATGGCAAAAGGAATTGGCAGAGTATGCAAGCTAGACT
TTGAAGTMAAAAATCCAAGGTTTTATAAATTGATGAAKGAAAAACCAACG
TGGTGGATGGGTCAAGCTYTGCATTTGCAATCGAATCATTATGACTACTA
GATGCTCAACRAAATGGCTCGATAAAGCTTTTTTGGTTGATATTATGACC
CTATTAACTAAACAATCTGGCTCTGCCACTTTCTGTGTGTATWTATTCAA
ATTTTAAAATGAAAGAAAGAGAAGTTGGAAAGAAATGTGAGAGAGAGAGA
GAAAAAAAAGAAGAGAAAATGGGAGTTTTATTTTATTTTATTTTTTTCTT
AAATTAAAAGTGCTATGACTACATGTTAGTGAGGTTTGAAAAAAAAATAC
AACGAAGTTTGACTTGGGCGGAAACTTTATTCTTTTTAGGGTAAATCTCA
GTTTACTACCCTCAAGTTTCGTGGTTTTCAACATTTGGTACATCAAGTTT
TTTTCTTCCCAGAGTCATACCTAAAGTGTTAATTTTGGAACAGTCTCATA
CATCCGTGAGTCAAATTATCAAGTCTGCCGTTAACTAATAACGTGGCGCT
CATGTGGACAATGACTGGGCGCCACGTGTCAATAAAAAAAATTAAAATTA
TTAAACTATTAAAATAATTAATTAATTAAAATAAAATAATAAAAAAAAAA
CCAGAACCCCTTTGTCTTCCACACCCTGACCCCTTCCCTTATCCCTCCCT
TCTCTCCTTTGCACCTACCCCAACGTCTGCACATCCATCATTCCCCCTCC
CTCTTCGACTCCACCTACTCAACCCTCATCCTCTTCGACKGCCCAGTTTC
TCTGTACGCAACCACCACCTTCCCCCACCCCCATATTCCCCCACTGTTCT
TCACTCTCCCTACAGATTTGACAACCTCATCTCTCCAGATTTGCAGTCGA
TTTTTCTTGCTTGCTTGCTTGCTTCTTCCTAGGCCCCATGTCCAAACCAC
ATCCCCTCCCCTGTGGATCCACTCCCATCCCCTTCTCTATCGTCCCCACC
CCAATCTCATCTCCAATTCTCTTTCATAAATTCCATTCCTAACCCCACAA
ACATGGAGAAAGGAATACCCATCCCCACCRTCGTTCGAGCACTTTTCTCC
ATTCGTCGGAGACCTTGTCGCCTCTATCCTTGATCTGGAAATATACCTTA
TTGCTTCAAACTTGTTGTGATTTTGGGTTGAAGGTTGCAGAGGGAGTGAG
GTTGGTGATGGGAAGAGATTCTACAAATTGAAGCTACGGACCYTGCAAAG
GAATTAAAGCTTGCTACCGCAGGTCTGGGGCGTGGGAGGAGGGTGAGACT
GTGGGTGGCTAGGGCTCGTGGGTAAGGTGGTTGCACAGTGGGATTATTGT
AGTTGTTTCTAGGTTTCTATGGGGGCTGCTGCTGGAGAAACCATTGGGGT
AGGTCGCTTGGACTAAGAGGTGGTGGAGAAGATTGGAGGAGGCATGGAGA
TTTTAGAGCTGGATGGTGAGGGTGCGGGTATGGGTTGCATAGGAAAGAAA
GGAGGAGGGGGTTGGGGGAGGTAGAAGACGGGYWWTTTTTTTTTTTGKAA
TTTTKAATTTTGAATTTTTTTAACCCCTTCTAAAAAAAATCCACGTGGAC
CCCTTAATGACACGTGGTGCACARTCATTGTCTACATAGGCGYCACGTCA
TCAGTTAACGGCAGACTTAACAATTTAACTAACAGATGTATGAGACTGTC
CCAAAATTAACACTTTAGATATGATTCTGGGGCGAAAAAAACTTGATGTA
CCAAATGTTGAAAACCACAAAACTTGAGGGTAGTAAAMTGAGATTTACCC
TTCTTTTTAAATAAACGATATTATCTACATTAAGGGGGTAAGAGGGTGGG
GGAGTGGGTTAAGGCTCACAATGGGTGAGCCATAATAATGTGGTTCAAAT
TCGCCTTTGTTGAAAATCGAAYCTAATACCTCTCACTTATCAATGAAGAK
AAATACTATTAAACTGTATTACTAAATGACAATTTGGATGGAATTATATA
CTATATTTCATTTTTTGATGGAATACTAAACCGTCTTTTCACTTTTTTTC
AATTGATAAGGAAAATTTAATTAATAAGTAGTTTTGAAAATAAGTACCAT
ATTCATTATATGATGCTAAAAATGAGTCTCGATAAAAACTTTGTCAGAAA
TTTTAATCCTATCTAAGAATTATTTTTTTATTAATAAGTAGTTTAAATAA
CTTTTCCAGACCGAGTGGTGGATTGTATGAAAGTGGGAGAAGTCCAATAC
CAATTGTGTACAATTATTATAATTTATGACATCACCCACTTTRACAAAAG
CTTGAATACCAGTGTACGAGGAAAGATCACATACGTCATTCGCCAGTGCA
CGTGACCCTCTGGTGACTGCCACGTCATCTATTTAATCCCACCCAACCAT
CTCGCCCCAGGTGTCGGCCTCCCACTGGTCCTTCCACACGCTAAAGATCT
TACTCCTCTCATGTAAACCCACCGCACTCCGTCCTCCATTTCCCAAACTA
CCCCCGCCTTTTCACGAAATCCCCAATACGCCCCTCCCCTGGACTTTGCA
CCCAGCGGCTTGTCTCGGAGCCAGTTTCTTACGGGAGTGTCCCCTCCTTC
GCAAAACAAAGCCCCGCCTCTCTCCCCTYYCCCCCCCTTCCCCCYCTCTC
TCTCTSCCCCCGTCTTTCACTGGTATCGTTCGTCTCTCAGATTCGTCGAT
CGGACGGTTCGTTGMGCGGCAGCAATGACTATGATGACTCCTGCACCGTT
GGATGTACGTACCGACTCCTCTACATTTCCACTCTCGGTTTAATTTCATT
GGGTTTCGGCTTCGTTCTTCGTTTCTGATCGCCTATGGATCTTGGTGGCG
TTCGGCGGTTTCGAACTGGGATGAATTTTGGGAATTCACCGACTTAMAGT
GATTGATTTGCTAGGGTTATGATTCAGTAAGATAGGGTTAGGTTTTTCTC
GATCAGAGCTCTGATTTTTGTTTCTTTTGTTAGCAGCAGCAGCAAGAGGA
CGAAGAGATGCTTGTGCCGAACTCGGATTTGGTCGAAGGTCCTCAGCCAA
TGGAAGGTTTAATTTTTAGCAATTTTTCGATGAGTTACTGTTTGAATTTC
TTATGTTTGTGTTTATGGTGTGGTTTTGGAGCGTTATGTGTGGCGTAGTT
GATCTGAAACAATTGGTTTTTGTGCGAATTTGGCATCACAGGGTTTGATT
AGAGTGCAAGTGTTTGCATTTTCTTTAGGGTTTTGGTTTTGTTTTTTTGA
AATTTATGGTATTTGGTGTGTTGGTAGTAGCCCAAGTGGAGCCAGCTAGT
ACAGTTGATAGTCAACCAGTGGAGGATCCTCCAACGATGAAATTCACTTG
GACAATTGAGAACTTTACTAGGTTGAACATCAAGAAGCACTACTCTGACA
TGTTCGTAGTGGGCGGCTATAAATGGTATTTTTTCTTGTCTACCAGATGT
CAAAAACTGATTATAACGCTACTTAAGATTGGCTTATATTTGTAGGTGAT
TGGATTTTGAATTGCTTTTGGTTTGTTTGATCAGGCGGATACTAATATTT
CCCAAGGGAAACAATGTGGACTACTTGTCAATGTATTTGGATGTGGCAGA
TTCCGGGACATTGCCATATGGGTGGAGTAGATATGCACACTTCAGCTTGG
CTGTAGTTAATCATATCCATACCAAGTACTCAATAAGAAAGGGTATATTC
CTTTATTAGTCTTGTTTCTTTTTAGCATTCAAGTCTGTGCGTTTGCCTGG
TTGTCGTATTCTGTTTTCTTGTTTTCTTTCAGTGAGAGCTTTGCTTGTTG
TTGGGTAGTCATGGGCACCCAAGGCTTTTAATTAGAATTTATTATCCTTG
GAATGGACCTACCTAAATGTGACTACGGGACAGAGGTTCGGGGCCGAAGG
AGTAGAGGAAGACCTAGGAAAACTTTGGAAGAGACCCTAAGAAAAGACTT
GAGTACTTGGATCTAACGGAGGACATGACACAAATGAGCGCAATGGCGTT
CTAGGATTTAGCCGACCCCACTTAGTGGGAAAAGGCTTTGTTGTTGTTGT
TGTTGGAATGGACCTACCTGGCTTTCAACTTCATAGTTCTTGGGTGATGC
CATTTGAACGCAAACAATATCTAATTAACCACTCTAATCTTGTTATTGTG
AGCTTTTAATTCTAATTTTTCTCATTGAAATATCAAAACTATAAAGTAAA
GAAAATTCTTCCACCCCTTTCTCTCTAAAATCTTGGCTAACGGCAGCAGC
ACCATCGTCTGACTATGTGCCCATGGCGCCTTTGTTTGGGGATTTTTGAA
GTTTGAGAAAAAGTGAATAAAAAAATTATGGAKTAAAACGTACCAACAGA
TGTTAGAAGTAAATTGAAAACCAATAGATTATTCCTTTTAGGTATCTAGA
TGTCAAATATAGATTAACAGTAAAGGTAGAAACAGGAAGAATTTACTTGG
AAATTACGTGCAATTAAAGGGTGAATTTCTAGGTAATGAAAAGGCTAACT
GAATCAAGGGTTCCCATTTATTAAGGGATGAGCTTGAGGCGGGTCTGACG
ATCAGATATGGTAAAGAATTGTATTTTATTGRTGTGACCTATTCTAGAAC
ATTAATTTGCAATGCGTTTAACCAGAATTGAACAATCTTTAATCATATTC
AAGATGTTTTYTAAGACCTTTGTCGTTCATTGTTGTATGATGTTGCAGAC
ACTCAGCACCAATTCAATGCAAGAGAAAGTGACTGGGGATTCACTTCATT
CATGCCTCTTGGTGATCTTTATGATCCGAGTAGGGGATATCTGGTGAACG
ATACAGTTGTGGTTGAAGCTGAGGTTGCTGTCCGTAAGGTTCTAGATTAC
TGGTCATATGACTCGAAAAAGGAAACTGGTTATGTTGGGCTCAAGAATCA
GGGAGCAACTTGTTATATGAATTCTCTTCTCCAGACTTTGTACCATATAC
CGTACTTCAGAAAGGTCATTTACGTGATCTCCTGTTTTCATTGTAAGCTA
AACATGAATTGTTTGAATTTTCTATGAAAAGCATTATCTCAATTTTGGAC
TTACTTACCAGGCCGTGTATCATATGCCAACAACTGAGAATGACATGCCT
TCAGGAAGCATCCCTTTGGCGCTACAAAGTTTATTCTATAAGCTTCAATA
CAATGACAGCAGTGTTGCAACCAAAGAATTGACCAAATCCTTTGGATGGG
ATACATATGATTCTTTTATGCAACATGATGTGCAGGAACTTAATAGAGTT
CTTTGTGAAAAGCTTGAAGATAAAATGAAGGTATAG

Coding sequence (CDS) from alignment at MDC015103.639:1389..7474-

>MDP0000298648 ID=MDP0000298648; Name=MDP0000298648; organism=Malus x domestica; type=CDS; length=1167bp; location=Sequence derived from: MDC015103.639:1389..7474- (Malus x domestica
ATGCAGAAATGCCAAGACAGAAACRACGTCGTCGCCATATATGATGCCAA
GGTAACAWAACTTGAGGCTGAACTAGCYCGARTTAATGCACAACTGGTGC
AAATTCTACAAATTGAAGCTACGGACCYTGCAAAGGAATTAAAGCTTGCT
ACCGCAGGTCTGGGGCGTGGGAGGAGGGTGAGACTGTGGGTGGCTAGGGC
TCGTGGATTCGTCGATCGGACGGTTCGTTGMGCGGCAGCAATGACTATGA
TGACTCCTGCACCGTTGGATCAGCAGCAAGAGGACGAAGAGATGCTTGTG
CCGAACTCGGATTTGGTCGAAGGTCCTCAGCCAATGGAAGTAGCCCAAGT
GGAGCCAGCTAGTACAGTTGATAGTCAACCAGTGGAGGATCCTCCAACGA
TGAAATTCACTTGGACAATTGAGAACTTTACTAGGTTGAACATCAAGAAG
CACTACTCTGACATGTTCGTAGTGGGCGGCTATAAATGGCGGATACTAAT
ATTTCCCAAGGGAAACAATGTGGACTACTTGTCAATGTATTTGGATGTGG
CAGATTCCGGGACATTGCCATATGGGTGGAGTAGATATGCACACTTCAGC
TTGGCTGTAGTTAATCATATCCATACCAAGTACTCAATAAGAAAGGACAC
TCAGCACCAATTCAATGCAAGAGAAAGTGACTGGGGATTCACTTCATTCA
TGCCTCTTGGTGATCTTTATGATCCGAGTAGGGGATATCTGGTGAACGAT
ACAGTTGTGGTTGAAGCTGAGGTTGCTGTCCGTAAGGTTCTAGATTACTG
GTCATATGACTCGAAAAAGGAAACTGGTTATGTTGGGCTCAAGAATCAGG
GAGCAACTTGTTATATGAATTCTCTTCTCCAGACTTTGTACCATATACCG
TACTTCAGAAAGCATTATCTCAATTTTGGACTTACTTACCAGGCCGTGTA
TCATATGCCAACAACTGAGAATGACATGCCTTCAGGAAGCATCCCTTTGG
CGCTACAAAGTTTATTCTATAAGCTTCAATACAATGACAGCAGTGTTGCA
ACCAAAGAATTGACCAAATCCTTTGGATGGGATACATATGATTCTTTTAT
GCAACATGATGTGCAGGAACTTAATAGAGTTCTTTGTGAAAAGCTTGAAG
ATAAAATGAAGGTATAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001394	Peptidase_C19_UCH
IPR002083	MATH/TRAF_dom
IPR008974	TRAF-like
IPR013322	TRAF-type
IPR018200	USP_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0004221	obsolete ubiquitin thiolesterase activity
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process