MDP0000299506, MDP0000299506 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000299506
Unique Name	MDP0000299506
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1903

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr2	chromosome	chr2:30519463..30521365 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC014055.187	contig	MDC014055.187:1811..3713 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000299506_exon_1	MDP0000299506_exon_1	Malus x domestica	CDS
MDP0000299506_exon_2	MDP0000299506_exon_2	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000299506	MDP0000299506	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000070	Pectinesterase, catalytic	PFAM	PF01095	Pectinesterase	coord: 266..354 score: 1.2e-27coord: 399..608 score: 2.3e
IPR006501	Pectinesterase inhibitor	GENE3D	1.20.140.40	no description	coord: 66..216 score: 2.9
IPR006501	Pectinesterase inhibitor	PFAM	PF04043	PMEI	coord: 65..214 score: 4
IPR006501	Pectinesterase inhibitor	SMART	SM00856	Plant invertase/pectin methylesterase inhibi	coord: 63..214 score: 1.1
IPR006501	Pectinesterase inhibitor	TIGRFAMs	TIGR01614	PME_inhib: pectinesterase inhibitor domain	coord: 36..218 score: 1.5
IPR006501	Pectinesterase inhibitor	SUPERFAMILY	101148	Plant invertase/pectin methylesterase inhibitor	coord: 65..221 score: 7.4
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 263..614 score: 2.3
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10	no description	coord: 401..621 score: 2e
IPR018040	Pectinesterase, active site	PROSITE	PS00503	PECTINESTERASE_2	coord: 461..470 score
None	No IPR available	PANTHER	PTHR22931	FAMILY NOT NAMED	coord: 63..560 score: 9.8
None	No IPR available	PANTHER	PTHR22931:SF5	METHYLESTERASE INHIBITOR-RELATED	coord: 63..560 score: 9.8
None	No IPR available	SEG	seg	seg	coord: 28..47 score: NAcoord: 221..231 score
None	No IPR available	SEG	seg	seg	coord: 20..34 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:30519463..30521365+
mRNA from alignment at MDC014055.187:1811..3713+
coding sequence from alignment at MDC014055.187:1811..3713+

mRNA sequence

>MDP0000299506 ID=MDP0000299506; Name=MDP0000299506; organism=Malus x domestica; type=mRNA; length=1903bp
ATGTCTTCCATCAAATCCTATGGCAAGATTGATGAATCCGACCAAGCCCG
GCTCGACGCTYGTAGGGAAACTCGAAAGAGAGTTGCCATCATAAGCCTTT
CGTCCATAGTTCTTGTCTGTGTCRTTGTTGCTGCTGTGGTTGGAACCACC
GTTCATAATAAATCTGGTGGGAACTCTAAAGGCTCGGCCATCTCCACTTC
TGTCAAGGCTGTTTGTGATGTGACCTTGTACCAGGATTCGTGTTACAGCA
GTCTTGGTCCTCTGGTTAACTCCAACAATGTTAAGCCTGAGGAGATTTTC
AAGTTGGCAATTCAGGTGGCGATCAATGAATTGTCGAAAGCCGCTACTCA
TTTTTCGGCTGATGGTGTTCTTAATGCGACTGCCAAGGACACACAGTCTG
TGGCAGCTTTGAAAGATTGTCAAGACCTTTTGAGTCTGGCATTGGATCAT
CTCAACGACTCATTGTCTGACACTAAGTCGTTGGTTGATGTGTTTGATGA
TCTCAAGACTTGGCTGAGCTCTTCAGGCACATATCAGCAGACTTGCATTG
AAGGTTTTGAYGATGTAAAAGGAGAACTCAAGGATAAAGTTGTCGGCTAC
TTGAAGAACTCCAATGAGTTAACTAGCAACAGCCTCGCCATTGTCTCTTG
GATTTCCAAAGTCCTTAACTTAGTGAACCTAAGGCGACTTCTGACACACC
CTGATCCCACCGATACGTACAGCCAGGGAGTACCAGAGTGGCTGCATCGG
AAGGATCGCAAGCTGCTTCAGAGTTCGGATTTGAGGAAGAAGGCAGACAT
TGTYGTGGCAAGCAATGGCAGTAGCAAATACAAAACAATTCAGGATGCAC
TCAATGCTGTTCCGGATAAGAGCAAGAAGAGAACAGTCATCTACGTCAAG
AAGGGGGTTTATTATGGGAATGTGAGGGTTGAGAAATCCAAGTGGAATGT
TTTGGTGGTCGGTGATGGTTCGAATGCAACTATTGTAACTGCCAAACTCA
ACGTTGTGGATGGAACTCCCACATTTTCCACTGCCACAGTCGGTAATAGT
TCGATAAAACTCTGTATAGCTAGCATATTTACTGATCACATTACTGCCGT
CCTTTTGAAAGGGGATTCTTCTCATGCAAAYGAGTCTCCKTTCAGTGAGA
GATCTGATCAGCAATGTTTGCTGGTAAATGTTTCATATYATAATAGTAAT
AGAAACAWTTATTTCTTTGTATGCAGCCGTTTTTGGAAAGGGATTCATTG
CCCGGGACATTGGATTTCGCAACACTGCAGGGCCAGCCAAGCACCAGGCA
GTGGCCTTGTTGTCAACTGCTGATCAGTCAGTCTTCTATAGGTGCGACAT
TGATGCATTCCAGGACACTCTCTATGCTCACTCCAATCGCCAATTCTACC
GCGAATGCAACATTTATGGAACAGTGGATTTCATTTTCGGGAACTCAGCA
GTTGTGCTCCAAAACTGCAACATAATGYCTAAGGTTCCCATGCGAGGCCA
GCAGAACACCATCACAGCTCAAGGGAAGTTTGATCCCAATCAAAATACAG
GAATTTCGATTCACAATTGCAGCATATCGCCCTTTGGAGACTTGTCCTCG
GTCAAAACTTTCCTCGGGAGGCCATGGAAGAATTACTCCACAACTGTGTA
CATGCAAACATACATGGGAAATCTCATCAGCACTGATGGATGGTTGCCAT
GGGTAGGCAATAGCGCTCCCGACACCGTATTTTACTCGGAATTTCAAAAT
TTTGGACCTGGTGCTTCCACAAAGAATAGGGTTAAATGGAAGGGGTTGAG
AACCATCAACCAAAAAGCAGCCAGCAAATTTACAGTGCATTCATTTCTCC
AAGGAACTAAGTGGATCTCTGATGCTGGTGTTACCTACACATCAAGCCTC
TGA

protein sequence of MDP0000299506

>MDP0000299506 ID=MDP0000299506; Name=MDP0000299506; organism=Malus x domestica; type=polypeptide; length=623bp
MSSIKSYGKIDESDQARLDAXRETRKRVAIISLSSIVLVCVXVAAVVGTT
VHNKSGGNSKGSAISTSVKAVCDVTLYQDSCYSSLGPLVNSNNVKPEEIF
KLAIQVAINELSKAATHFSADGVLNATAKDTQSVAALKDCQDLLSLALDH
LNDSLSDTKSLVDVFDDLKTWLSSSGTYQQTCIEGFDDVKGELKDKVVGY
LKNSNELTSNSLAIVSWISKVLNLVNLRRLLTHPDPTDTYSQGVPEWLHR
KDRKLLQSSDLRKKADIVVASNGSSKYKTIQDALNAVPDKSKKRTVIYVK
KGVYYGNVRVEKSKWNVLVVGDGSNATIVTAKLNVVDGTPTFSTATVGNS
SIKLCIASIFTDHITAVLLKGDSSHANESPFSERSDQQCLLVNVSYXNTV
FGKGFIARDIGFRNTAGPAKHQAVALLSTADQSVFYRCDIDAFQDTLYAH
SNRQFYRECNIYGTVDFIFGNSAVVLQNCNIMXKVPMRGQQNTITAQGKF
DPNQNTGISIHNCSISPFGDLSSVKTFLGRPWKNYSTTVYMQTYMGNLIS
TDGWLPWVGNSAPDTVFYSEFQNFGPGASTKNRVKWKGLRTINQKAASKF
TVHSFLQGTKWISDAGVTYTSSL

mRNA from alignment at chr2:30519463..30521365+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000299506 ID=MDP0000299506; Name=MDP0000299506; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr2:30519463..30521365+ (Malus x domestica

mRNA from alignment at MDC014055.187:1811..3713+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000299506 ID=MDP0000299506; Name=MDP0000299506; organism=Malus x domestica; type=mRNA; length=1903bp; location=Sequence derived from: MDC014055.187:1811..3713+ (Malus x domestica
ATGTCTTCCATCAAATCCTATGGCAAGATTGATGAATCCGACCAAGCCCG
GCTCGACGCTYGTAGGGAAACTCGAAAGAGAGTTGCCATCATAAGCCTTT
CGTCCATAGTTCTTGTCTGTGTCRTTGTTGCTGCTGTGGTTGGAACCACC
GTTCATAATAAATCTGGTGGGAACTCTAAAGGCTCGGCCATCTCCACTTC
TGTCAAGGCTGTTTGTGATGTGACCTTGTACCAGGATTCGTGTTACAGCA
GTCTTGGTCCTCTGGTTAACTCCAACAATGTTAAGCCTGAGGAGATTTTC
AAGTTGGCAATTCAGGTGGCGATCAATGAATTGTCGAAAGCCGCTACTCA
TTTTTCGGCTGATGGTGTTCTTAATGCGACTGCCAAGGACACACAGTCTG
TGGCAGCTTTGAAAGATTGTCAAGACCTTTTGAGTCTGGCATTGGATCAT
CTCAACGACTCATTGTCTGACACTAAGTCGTTGGTTGATGTGTTTGATGA
TCTCAAGACTTGGCTGAGCTCTTCAGGCACATATCAGCAGACTTGCATTG
AAGGTTTTGAYGATGTAAAAGGAGAACTCAAGGATAAAGTTGTCGGCTAC
TTGAAGAACTCCAATGAGTTAACTAGCAACAGCCTCGCCATTGTCTCTTG
GATTTCCAAAGTCCTTAACTTAGTGAACCTAAGGCGACTTCTGACACACC
CTGATCCCACCGATACGTACAGCCAGGGAGTACCAGAGTGGCTGCATCGG
AAGGATCGCAAGCTGCTTCAGAGTTCGGATTTGAGGAAGAAGGCAGACAT
TGTYGTGGCAAGCAATGGCAGTAGCAAATACAAAACAATTCAGGATGCAC
TCAATGCTGTTCCGGATAAGAGCAAGAAGAGAACAGTCATCTACGTCAAG
AAGGGGGTTTATTATGGGAATGTGAGGGTTGAGAAATCCAAGTGGAATGT
TTTGGTGGTCGGTGATGGTTCGAATGCAACTATTGTAACTGCCAAACTCA
ACGTTGTGGATGGAACTCCCACATTTTCCACTGCCACAGTCGGTAATAGT
TCGATAAAACTCTGTATAGCTAGCATATTTACTGATCACATTACTGCCGT
CCTTTTGAAAGGGGATTCTTCTCATGCAAAYGAGTCTCCKTTCAGTGAGA
GATCTGATCAGCAATGTTTGCTGGTAAATGTTTCATATYATAATAGTAAT
AGAAACAWTTATTTCTTTGTATGCAGCCGTTTTTGGAAAGGGATTCATTG
CCCGGGACATTGGATTTCGCAACACTGCAGGGCCAGCCAAGCACCAGGCA
GTGGCCTTGTTGTCAACTGCTGATCAGTCAGTCTTCTATAGGTGCGACAT
TGATGCATTCCAGGACACTCTCTATGCTCACTCCAATCGCCAATTCTACC
GCGAATGCAACATTTATGGAACAGTGGATTTCATTTTCGGGAACTCAGCA
GTTGTGCTCCAAAACTGCAACATAATGYCTAAGGTTCCCATGCGAGGCCA
GCAGAACACCATCACAGCTCAAGGGAAGTTTGATCCCAATCAAAATACAG
GAATTTCGATTCACAATTGCAGCATATCGCCCTTTGGAGACTTGTCCTCG
GTCAAAACTTTCCTCGGGAGGCCATGGAAGAATTACTCCACAACTGTGTA
CATGCAAACATACATGGGAAATCTCATCAGCACTGATGGATGGTTGCCAT
GGGTAGGCAATAGCGCTCCCGACACCGTATTTTACTCGGAATTTCAAAAT
TTTGGACCTGGTGCTTCCACAAAGAATAGGGTTAAATGGAAGGGGTTGAG
AACCATCAACCAAAAAGCAGCCAGCAAATTTACAGTGCATTCATTTCTCC
AAGGAACTAAGTGGATCTCTGATGCTGGTGTTACCTACACATCAAGCCTC
TGA

Coding sequence (CDS) from alignment at MDC014055.187:1811..3713+

>MDP0000299506 ID=MDP0000299506; Name=MDP0000299506; organism=Malus x domestica; type=CDS; length=1872bp; location=Sequence derived from: MDC014055.187:1811..3713+ (Malus x domestica
ATGTCTTCCATCAAATCCTATGGCAAGATTGATGAATCCGACCAAGCCCG
GCTCGACGCTYGTAGGGAAACTCGAAAGAGAGTTGCCATCATAAGCCTTT
CGTCCATAGTTCTTGTCTGTGTCRTTGTTGCTGCTGTGGTTGGAACCACC
GTTCATAATAAATCTGGTGGGAACTCTAAAGGCTCGGCCATCTCCACTTC
TGTCAAGGCTGTTTGTGATGTGACCTTGTACCAGGATTCGTGTTACAGCA
GTCTTGGTCCTCTGGTTAACTCCAACAATGTTAAGCCTGAGGAGATTTTC
AAGTTGGCAATTCAGGTGGCGATCAATGAATTGTCGAAAGCCGCTACTCA
TTTTTCGGCTGATGGTGTTCTTAATGCGACTGCCAAGGACACACAGTCTG
TGGCAGCTTTGAAAGATTGTCAAGACCTTTTGAGTCTGGCATTGGATCAT
CTCAACGACTCATTGTCTGACACTAAGTCGTTGGTTGATGTGTTTGATGA
TCTCAAGACTTGGCTGAGCTCTTCAGGCACATATCAGCAGACTTGCATTG
AAGGTTTTGAYGATGTAAAAGGAGAACTCAAGGATAAAGTTGTCGGCTAC
TTGAAGAACTCCAATGAGTTAACTAGCAACAGCCTCGCCATTGTCTCTTG
GATTTCCAAAGTCCTTAACTTAGTGAACCTAAGGCGACTTCTGACACACC
CTGATCCCACCGATACGTACAGCCAGGGAGTACCAGAGTGGCTGCATCGG
AAGGATCGCAAGCTGCTTCAGAGTTCGGATTTGAGGAAGAAGGCAGACAT
TGTYGTGGCAAGCAATGGCAGTAGCAAATACAAAACAATTCAGGATGCAC
TCAATGCTGTTCCGGATAAGAGCAAGAAGAGAACAGTCATCTACGTCAAG
AAGGGGGTTTATTATGGGAATGTGAGGGTTGAGAAATCCAAGTGGAATGT
TTTGGTGGTCGGTGATGGTTCGAATGCAACTATTGTAACTGCCAAACTCA
ACGTTGTGGATGGAACTCCCACATTTTCCACTGCCACAGTCGGTAATAGT
TCGATAAAACTCTGTATAGCTAGCATATTTACTGATCACATTACTGCCGT
CCTTTTGAAAGGGGATTCTTCTCATGCAAAYGAGTCTCCKTTCAGTGAGA
GATCTGATCAGCAATGTTTGCTGGTAAATGTTTCATATYATAATACCGTT
TTTGGAAAGGGATTCATTGCCCGGGACATTGGATTTCGCAACACTGCAGG
GCCAGCCAAGCACCAGGCAGTGGCCTTGTTGTCAACTGCTGATCAGTCAG
TCTTCTATAGGTGCGACATTGATGCATTCCAGGACACTCTCTATGCTCAC
TCCAATCGCCAATTCTACCGCGAATGCAACATTTATGGAACAGTGGATTT
CATTTTCGGGAACTCAGCAGTTGTGCTCCAAAACTGCAACATAATGYCTA
AGGTTCCCATGCGAGGCCAGCAGAACACCATCACAGCTCAAGGGAAGTTT
GATCCCAATCAAAATACAGGAATTTCGATTCACAATTGCAGCATATCGCC
CTTTGGAGACTTGTCCTCGGTCAAAACTTTCCTCGGGAGGCCATGGAAGA
ATTACTCCACAACTGTGTACATGCAAACATACATGGGAAATCTCATCAGC
ACTGATGGATGGTTGCCATGGGTAGGCAATAGCGCTCCCGACACCGTATT
TTACTCGGAATTTCAAAATTTTGGACCTGGTGCTTCCACAAAGAATAGGG
TTAAATGGAAGGGGTTGAGAACCATCAACCAAAAAGCAGCCAGCAAATTT
ACAGTGCATTCATTTCTCCAAGGAACTAAGTGGATCTCTGATGCTGGTGT
TACCTACACATCAAGCCTCTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000070	Pectinesterase_cat
IPR006501	Pectinesterase_inhib_dom
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold
IPR018040	Pectinesterase_Tyr_AS

Vocabulary: **Cellular Component**
Term	Definition
GO:0005618	cell wall

Vocabulary: **Molecular Function**
Term	Definition
GO:0030599	pectinesterase activity
GO:0004857	enzyme inhibitor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0042545	cell wall modification