MDP0000309310, MDP0000309310 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000309310
Unique Name	MDP0000309310
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	5413

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr1	chromosome	chr1:28530230..28535642 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC022149.74	contig	MDC022149.74:13306..18718 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000309310_exon_1	MDP0000309310_exon_1	Malus x domestica	CDS
MDP0000309310_exon_2	MDP0000309310_exon_2	Malus x domestica	CDS
MDP0000309310_exon_3	MDP0000309310_exon_3	Malus x domestica	CDS
MDP0000309310_exon_4	MDP0000309310_exon_4	Malus x domestica	CDS
MDP0000309310_exon_5	MDP0000309310_exon_5	Malus x domestica	CDS
MDP0000309310_exon_6	MDP0000309310_exon_6	Malus x domestica	CDS
MDP0000309310_exon_7	MDP0000309310_exon_7	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000309310	MDP0000309310	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000195	Rab-GTPase-TBC domain	PFAM	PF00566	RabGAP-TBC	coord: 441..561 score: 1.6
IPR000195	Rab-GTPase-TBC domain	SMART	SM00164	Domain in Tre-2, BUB2p, and Cdc16p. Probable	coord: 225..588 score: 3.1
IPR000195	Rab-GTPase-TBC domain	PROFILE	PS50086	TBC_RABGAP	coord: 228..562 score: 30
IPR000195	Rab-GTPase-TBC domain	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 201..522 score: 2.3e-37coord: 497..641 score: 8.7
None	No IPR available	COIL	coil	coiled-coil	coord: 247..268 score
None	No IPR available	GENE3D	1.10.8.270	no description	coord: 385..488 score: 1.9
None	No IPR available	PANTHER	PTHR22957	FAMILY NOT NAMED	coord: 132..645 score: 2.6e
None	No IPR available	PANTHER	PTHR22957:SF31	GTPASE ACTIVATOR PROTEIN OF RAB-LIKE SMALL GTPASES-LIKE PROTEIN	coord: 132..645 score: 2.6e
None	No IPR available	SEG	seg	seg	coord: 1..13 score: NAcoord: 21..33 score: NAcoord: 87..101 score: NAcoord: 113..126 score: NAcoord: 140..158 score: NAcoord: 162..180 score: NAcoord: 305..320 score: NAcoord: 330..339 score
None	No IPR available	SEG	seg	seg	coord: 27..48 score
None	No IPR available	SEG	seg	seg	coord: 3..12 score: NAcoord: 18..35 score: NAcoord: 48..69 score
None	No IPR available	SEG	seg	seg	coord: 43..54 score
None	No IPR available	SEG	seg	seg	coord: 20..36 score: NAcoord: 38..49 score
None	No IPR available	SEG	seg	seg	coord: 62..75 score
None	No IPR available	SEG	seg	seg	coord: 25..35 score
None	No IPR available	SEG	seg	seg	coord: 42..53 score
None	No IPR available	SEG	seg	seg	coord: 3..16 score
None	No IPR available	SEG	seg	seg	coord: 37..49 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:28530230..28535642+
mRNA from alignment at MDC022149.74:13306..18718+
coding sequence from alignment at MDC022149.74:13306..18718+

mRNA sequence

>MDP0000309310 ID=MDP0000309310; Name=MDP0000309310; organism=Malus x domestica; type=mRNA; length=5413bp
ATGGTGGTGGTGCYGACGAYGACGRCTATGATGRTGGTAGAGGATGATTG
TGTGAACAATGGTTATGAGGGATGGTTTTGAAAATGGTGGTTGAGAKGYA
GGGATGATGGAGGTGGTGGTGGCTATGGTGAGGGTAATGGAATGGAGAAT
GTGGTTGTGATGGTGGTGGCRGCGATAGTGGTGTGAGATGATGGTAATGA
TGGCAATGGTGGGACAGTGGAGGTGGTGATGACCATGGTGGYAGGATTAT
GGCGATGCATAATATGATGGYGTCGGAGGTACAAGTTGTGGTGGTCATGC
TGATACRGTGGTGATTATGGYAGTGTACTTACAAAACATATTTTCTTCTT
GAGAATTCTCTCATAAGCATTTTTGTTATAGGTGTTTTTATTAGAAACAC
GCTAAAATTCATATTAAAAATCAAAGTGCTTCTACTAAAAATACTTTTGT
AAATTAGAAACATTTGTATATAACGCAATTACAAGTGTTTTTATTGGTCA
TAAAAACACTTATAATCATTCAAGAAGGAGTCCAAACAAACAATTAATAC
AGGAAATGATATCCCTAATGTACTCATATCATTTAGTTATTAAATTAAAT
AAGTCAAATGAGAATGAGAAAATAGACAAGTGTAAAAGAAGATAATCGAG
MCGCATAAATCATTTCCTCTTAATTAACAAAGGAGTAATGTCATATCATG
CATCCAATTGCCTAATTTTCCATCTCACATGATTGGGTTAATTAGTCATA
TAATCCCTAAATATAATAAAGTGACAAGAGACCTAATACAATTAACTAAA
ARAAATGCTTGATTAGTATACAATACCTAATGTTAAACACAAATTAGGAA
ACGCTTGACCTACCCTCAAAAAAAAAAAAAAAMAACAAAAMAACAAAAGG
AAACGCTTGACCTAGAATTAGTAAGCTAATGGAAAATGAGAAATGCTAAC
AAGCTCATTTAAAGTGTGACTCTTCACAAATTCTCTATTAACCCACAATT
TAACGTCATTTTTTGTGCYAATATTATAAAATATTGTGTCAAAATATACA
GAGTTTATGAAAAATCATACTTTTGAAAGAGGCGGTTAGCATTTCTCATA
AAAAAAAAARAGTAAACTGTCGATTTGCCCCTAAACTATCATCCAACTTT
TGATTTCCCCCTTGAACTTTTTAATTGGAAAATTAAGGACTTGAACTAAT
TTTTTTGGCCGATTTGCCCCTGCTGTTAATTTTTCATTCATTCCATCCAA
AATTCTGTTAAATGGAAGCATGTGCACAACATGTGTGGGTAGTTTGATCG
TTTCATTCTTTAAAATAATTGAAAACCTTAGATTTCTAAAATATAAACCT
ATGCAAATATGTGTGAATCTATAACTTTTATGTCTGAAGGTTTAGTGAAG
TGGCGTTTTTGTCCACAAAGGACAGTTACGTGGTTTGCTCACGATAAAAG
TTAACGTTAATTTTGATGAAATCTATGAAAAACTAACGGTAGGGGGCAAA
TCGGAAAAAAAAAATAGATTAAGTCCTTAATTTTTCAATTAAAAAGTTTA
TGAGGGAAATTAAAAGTTGAGTGATAGTTCAGAGGGCAAATTGACACTTT
ACTCTAAAAAAAAATTAGGGATTGTGGTTAGGATTTTCACACTCTTTGTT
TTTTTGCTCAACTCTTCCACTTGACTCTCTTTCTCACTCCTTATAAAAAT
GGTGTCTACTCTCCTACTCTCTAGATTCTAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAAAGACTTCCAAAGTAAAAACAAAGCAAAAATCCAAACCAAAG
CAGTTGCCTTTCCCAATTCAATATTTCATTCATTCATCCACACTTGCAGT
TTTTCAGTTGGGGGTAAAATTATTAAATTTAAAATCCTCAATTCATCCCA
ACCTCCTCCCTGTCCTTGCTCTCCCACAAGAAGCAGCAGATCACAAGGGC
ATTTCTGTCATTCACGACCCTGCTCACATGATCGCCTCCGGTTCCGGAAA
CGCCTTCATCTCCGGCGGAGGAGGGTTATGGGCGGCGGCGCCGTCGTACA
TGACCATCGGCGTCACGGCCTTGGCTGGGCTCGCGGTGGTCGTGGCCGTG
TTCTGCACTGCCACTAGGTAAAGAAATTAAAAAAAAAAGCTCTGAAATTT
CTCAAAAAAGCTCTGGAATTTCTGAAAAACGCAAACCCTAGGACAAAAAT
TCACTGATAGATGAGAGCTCTACGACGAACTCACACTTCGTCGTCGCCTT
CGAGCTCGAATTCATCTCCTTCTTCGTCTTCGTCGTCGTCTTCGTGGATT
TATTTGCGTTCGGTTCTGTTAGTCGTGTCATCTTCTTCACCAGCTCATTG
TTCTTCCTCTGATCGGTGAGTCTCTCTCTCTCTCTTTCTCCAAAGCTTTT
CTTTTTAGTTTCCGCTCTTAGATCCCGATCTCGGGGAGCTTCAAGTTCAT
GTTTTTAGTACCAATTTTAGCTCAGTTCCACTGTTTTAATGGCGTTTTCT
CGTCAATTCGTTCTTTCGGGTCACCTTCTTCATTCGCATTTTGGTCCTCC
TTGAAAATTGTTACTCTTTCAGTTGCTTAAAAAATTGTGGGTTCGATACT
TCGATGTGTTGGGCAAGCCACATTGGTGGTTTCATTTGCGTATCGATTTG
CTTGTAGAAGATTTGTGTYGTTTTTGTCTCATGGTTCCAGTCAAAATTAG
GGTTTTTATGTTTTAATATGATAAGTGTTTGAAGTTTGTATTTTAAGCTG
CAACTGAGCAACAATGCAGTGGTTTAATAAGTCATAAACCCGAATCGAGT
TAGGTTTTACTAATCTTCTCAACAGATAGATGGATTGAAATGTTTTGGAT
ATTCAAAGTCAATTGTTTAAGCTGCAAAGCTATTGCATTAATCGGCATTT
TAATCCTTGTCGATAATTTTCTCTAGCAAGTTGATTTGCTTAGACTTGGC
CCTTCGAGGCAGCGTCCGTAGAACATCCAGACTTTTGAAATGATATATTA
TTCTGTTGACTTATGGCAAGACTGTTTCTTTTATATGAAGGGTTCAACTT
TTAGGATKTTTTTATTGGCCTAACATTTTCGTTCATTTAGGCATTACTAT
TTTTCATACAGTTGATGCTTCCTTAATCTTACCATTACTAATTGCACGTA
TTGTTTTATTTTCAGGGTTCGTCTTAAGTCGCCTTGGTCCCGCAGGAAAA
GAAAACATGCCCTTTCACCTCAGCAATGGAGGCTTTYCTTTACGCCTGAT
GGAAAGCTTCGAGATGGTGGAGTTAAGTTGGTGAAGAAAGTTCGCAGTGG
GGTGAGTYGCTGTCACATTCGTATTATACTTTTTGTGTTMAGAATGCTYT
AACATCTAATTTTTGTATGTATTCATGCTTCCATCATTGACGTTATTCAT
CTTAAATTGTTTTGAATGCAGGGTGTTGATCCAAGTATTAGGGCAGAAGT
TTGGCCATTCCTCCTTGGAGTGTAAGCATGTCCAACACCTCTTTTAAGTT
TTTAACTAAAACATTGCTGCATTAATACCTTGCATCTCTGAGATAGACCT
CGCTATGTGATATTTTGGCTTCACCATCAGGTGTTTTGGTGTATCATTCC
TAGCAGAGGATTATATGCTCTTTCCCTACTATTCGTGTAGATTATTGCTT
CTAGACGTCTCATTAGGTCCAAATCAAACATAATGACTGCTAGATACATG
AGCTTTTATTTAGGTCTGGTTCTGGGTTGGGAGCAGCTCATTTTAGGCTT
AGACCTGACATTTTGTGCTTTTGAACACTTCGTTGTGTAGTCAATGTAAG
AGTCAAAGCTTCAAGAAAGTATTTTTTTCTCCACTTAAGAAGTGTAATGC
GATTCCTTCTGAGTTGATGRCATGAGTTTTTGAAATAAAATCTGACCACT
GTRCTGATTCCTGTTCTGCATATACATTAAAATGTTGTTTTCGGAAAGTG
ATGAAACCATACGTRCATATGTTGACTGGATTTCTCTGTCTCAACAGCTA
TGAATTAAACAGTTCAAAAGAAGAAAGAGATGTTGTAAGATCTCAGAAAA
GGTACTAATGCCAATTCCATWTAGTTTCTTTTGTAGCTTTATGTTGCATA
AGTTGAATAAATTCTCTCCAGTTTAGTAATTCTCTGTTTCTTATCCATTG
GCCTTGCTAAATTTATGGTACGTTGTTCGAATATTTTGTTGCAGAAAGGA
ATATGAGAAACTCCGCAGACAGTGCCGCCGACTCACAAAGCGCAAAAATG
ATAGCTCCAAGTTGAATGGGGACAGTTGTAGATTCACCCATGATACAGAT
TCACCCAGCTCTGAGGATGTGGTTAGCGCCAGGGAATCCCTTTCTAGTGA
AGATAAGATACCAGATGCTGAATACTCAGATGACCCTTCCAGTACGTTGT
TGGATGGAGATGATGATGGTTCAAGAGAAAACACAAATGCGGATGCCAAA
GACTCTGACTCATCTGACTCGGACTCCTCTGAAGAACCTGAGGTGATTCA
GGCTTTCCCCTCATGTGAAGGGAGGGAAGAAAATRATCCTGATGTGAYTT
CCAAGGATGAATCTTCTCCCTTGAGGACGGAAGTCCAACCAAAGCTAAAC
AGTGAGGATTTTGCCACATGGCAGCGGATCATACGCCTTGATGCAATACG
AACTAATTCAGATTGGATTCCGCACTCCCCATCTCAAGCTGAAGTGTCAC
ACGATAGGGCATCACGTTCTGCTGAGGCTGTTGGGTTGAAAGATTACAGT
CACTTGGAGCCTTGCAGAATTTTCCATGCTGCTAGACTAGTTGCTATTCT
TGAAGCATATGCACTCTATGATCCCGAAATTGGTTACTGCCAGGGTATGA
GTGACCTGCTTTCTCCTATAGCTGCTGTAATAACAGAGGATCACGAGGCT
TTCTGGTGTTTTGTCGGTTTCATGAAGAAGGCTCGACATAATTTTAGGCT
TGACGAGGTAGGGATCCGAAAGCAGTTGAGTATCGTTTCTAAGATTATCA
AATGTAAGGACTCCCACCTATACAGGCACTTGGAGAAGCTCCAGGCGGAG
GATTGCTTTTTCGTTTATCGGATGGTGGTTGTGCTATTTAGAAGAGAGTT
AACATTCGAACAGACAGTATGCCTCTGGGAGGTAATGTGGGCCGATCAAG
CAGCCATTAGGGCAGGGATYGGAAAATCTGCGTGGAGCAGGATAAGGCAA
CGRGCCCCACCAACAGACGATTTGTTACTTTTTGCAATCGCAGCTTCYGT
RTTGCAGAAGAGGAAACTGATMATCGAAAAGTACAGCAGCATGGATGAGA
TTATCCGGGAGTGCAACAGCATGTCCGGGCAACTTGATATATGGAAGCTC
CTCGACGATGCACATGACTTGGTGGTAAACCTCCATGACAAGATAGAGAC
ATCTTTCTCATGA

protein sequence of MDP0000309310

>MDP0000309310 ID=MDP0000309310; Name=MDP0000309310; organism=Malus x domestica; type=polypeptide; length=649bp
MVVVXTXTXMMXVEDDCVNNGYEGCGGGDDHGGRIMAMHNMMXSELGVKL
LNLKSSIHPNLLPVLALPQEAADHKGISVIHDPAHMIASGSGNAFISGGG
GLWAAAPSYMTIGVTALAGLAVVVAVFCTATRALRRTHTSSSPSSSNSSP
SSSSSSSSWIYLRSVLLVVSSSSPAHCSSSDRVRLKSPWSRRKRKHALSP
QQWRLXFTPDGKLRDGGVKLVKKVRSGGVDPSIRAEVWPFLLGVKEYEKL
RRQCRRLTKRKNDSSKLNGDSCRFTHDTDSPSSEDVVSARESLSSEDKIP
DAEYSDDPSSTLLDGDDDGSRENTNADAKDSDSSDSDSSEEPEVIQAFPS
CEGREENXPDVXSKDESSPLRTEVQPKLNSEDFATWQRIIRLDAIRTNSD
WIPHSPSQAEVSHDRASRSAEAVGLKDYSHLEPCRIFHAARLVAILEAYA
LYDPEIGYCQGMSDLLSPIAAVITEDHEAFWCFVGFMKKARHNFRLDEVG
IRKQLSIVSKIIKCKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELTFEQ
TVCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLFAIAASVLQKR
KLIIEKYSSMDEIIRECNSMSGQLDIWKLLDDAHDLVVNLHDKIETSFS

mRNA from alignment at chr1:28530230..28535642+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000309310 ID=MDP0000309310; Name=MDP0000309310; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr1:28530230..28535642+ (Malus x domestica

mRNA from alignment at MDC022149.74:13306..18718+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000309310 ID=MDP0000309310; Name=MDP0000309310; organism=Malus x domestica; type=mRNA; length=5413bp; location=Sequence derived from: MDC022149.74:13306..18718+ (Malus x domestica
ATGGTGGTGGTGCYGACGAYGACGRCTATGATGRTGGTAGAGGATGATTG
TGTGAACAATGGTTATGAGGGATGGTTTTGAAAATGGTGGTTGAGAKGYA
GGGATGATGGAGGTGGTGGTGGCTATGGTGAGGGTAATGGAATGGAGAAT
GTGGTTGTGATGGTGGTGGCRGCGATAGTGGTGTGAGATGATGGTAATGA
TGGCAATGGTGGGACAGTGGAGGTGGTGATGACCATGGTGGYAGGATTAT
GGCGATGCATAATATGATGGYGTCGGAGGTACAAGTTGTGGTGGTCATGC
TGATACRGTGGTGATTATGGYAGTGTACTTACAAAACATATTTTCTTCTT
GAGAATTCTCTCATAAGCATTTTTGTTATAGGTGTTTTTATTAGAAACAC
GCTAAAATTCATATTAAAAATCAAAGTGCTTCTACTAAAAATACTTTTGT
AAATTAGAAACATTTGTATATAACGCAATTACAAGTGTTTTTATTGGTCA
TAAAAACACTTATAATCATTCAAGAAGGAGTCCAAACAAACAATTAATAC
AGGAAATGATATCCCTAATGTACTCATATCATTTAGTTATTAAATTAAAT
AAGTCAAATGAGAATGAGAAAATAGACAAGTGTAAAAGAAGATAATCGAG
MCGCATAAATCATTTCCTCTTAATTAACAAAGGAGTAATGTCATATCATG
CATCCAATTGCCTAATTTTCCATCTCACATGATTGGGTTAATTAGTCATA
TAATCCCTAAATATAATAAAGTGACAAGAGACCTAATACAATTAACTAAA
ARAAATGCTTGATTAGTATACAATACCTAATGTTAAACACAAATTAGGAA
ACGCTTGACCTACCCTCAAAAAAAAAAAAAAAMAACAAAAMAACAAAAGG
AAACGCTTGACCTAGAATTAGTAAGCTAATGGAAAATGAGAAATGCTAAC
AAGCTCATTTAAAGTGTGACTCTTCACAAATTCTCTATTAACCCACAATT
TAACGTCATTTTTTGTGCYAATATTATAAAATATTGTGTCAAAATATACA
GAGTTTATGAAAAATCATACTTTTGAAAGAGGCGGTTAGCATTTCTCATA
AAAAAAAAARAGTAAACTGTCGATTTGCCCCTAAACTATCATCCAACTTT
TGATTTCCCCCTTGAACTTTTTAATTGGAAAATTAAGGACTTGAACTAAT
TTTTTTGGCCGATTTGCCCCTGCTGTTAATTTTTCATTCATTCCATCCAA
AATTCTGTTAAATGGAAGCATGTGCACAACATGTGTGGGTAGTTTGATCG
TTTCATTCTTTAAAATAATTGAAAACCTTAGATTTCTAAAATATAAACCT
ATGCAAATATGTGTGAATCTATAACTTTTATGTCTGAAGGTTTAGTGAAG
TGGCGTTTTTGTCCACAAAGGACAGTTACGTGGTTTGCTCACGATAAAAG
TTAACGTTAATTTTGATGAAATCTATGAAAAACTAACGGTAGGGGGCAAA
TCGGAAAAAAAAAATAGATTAAGTCCTTAATTTTTCAATTAAAAAGTTTA
TGAGGGAAATTAAAAGTTGAGTGATAGTTCAGAGGGCAAATTGACACTTT
ACTCTAAAAAAAAATTAGGGATTGTGGTTAGGATTTTCACACTCTTTGTT
TTTTTGCTCAACTCTTCCACTTGACTCTCTTTCTCACTCCTTATAAAAAT
GGTGTCTACTCTCCTACTCTCTAGATTCTAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAAAGACTTCCAAAGTAAAAACAAAGCAAAAATCCAAACCAAAG
CAGTTGCCTTTCCCAATTCAATATTTCATTCATTCATCCACACTTGCAGT
TTTTCAGTTGGGGGTAAAATTATTAAATTTAAAATCCTCAATTCATCCCA
ACCTCCTCCCTGTCCTTGCTCTCCCACAAGAAGCAGCAGATCACAAGGGC
ATTTCTGTCATTCACGACCCTGCTCACATGATCGCCTCCGGTTCCGGAAA
CGCCTTCATCTCCGGCGGAGGAGGGTTATGGGCGGCGGCGCCGTCGTACA
TGACCATCGGCGTCACGGCCTTGGCTGGGCTCGCGGTGGTCGTGGCCGTG
TTCTGCACTGCCACTAGGTAAAGAAATTAAAAAAAAAAGCTCTGAAATTT
CTCAAAAAAGCTCTGGAATTTCTGAAAAACGCAAACCCTAGGACAAAAAT
TCACTGATAGATGAGAGCTCTACGACGAACTCACACTTCGTCGTCGCCTT
CGAGCTCGAATTCATCTCCTTCTTCGTCTTCGTCGTCGTCTTCGTGGATT
TATTTGCGTTCGGTTCTGTTAGTCGTGTCATCTTCTTCACCAGCTCATTG
TTCTTCCTCTGATCGGTGAGTCTCTCTCTCTCTCTTTCTCCAAAGCTTTT
CTTTTTAGTTTCCGCTCTTAGATCCCGATCTCGGGGAGCTTCAAGTTCAT
GTTTTTAGTACCAATTTTAGCTCAGTTCCACTGTTTTAATGGCGTTTTCT
CGTCAATTCGTTCTTTCGGGTCACCTTCTTCATTCGCATTTTGGTCCTCC
TTGAAAATTGTTACTCTTTCAGTTGCTTAAAAAATTGTGGGTTCGATACT
TCGATGTGTTGGGCAAGCCACATTGGTGGTTTCATTTGCGTATCGATTTG
CTTGTAGAAGATTTGTGTYGTTTTTGTCTCATGGTTCCAGTCAAAATTAG
GGTTTTTATGTTTTAATATGATAAGTGTTTGAAGTTTGTATTTTAAGCTG
CAACTGAGCAACAATGCAGTGGTTTAATAAGTCATAAACCCGAATCGAGT
TAGGTTTTACTAATCTTCTCAACAGATAGATGGATTGAAATGTTTTGGAT
ATTCAAAGTCAATTGTTTAAGCTGCAAAGCTATTGCATTAATCGGCATTT
TAATCCTTGTCGATAATTTTCTCTAGCAAGTTGATTTGCTTAGACTTGGC
CCTTCGAGGCAGCGTCCGTAGAACATCCAGACTTTTGAAATGATATATTA
TTCTGTTGACTTATGGCAAGACTGTTTCTTTTATATGAAGGGTTCAACTT
TTAGGATKTTTTTATTGGCCTAACATTTTCGTTCATTTAGGCATTACTAT
TTTTCATACAGTTGATGCTTCCTTAATCTTACCATTACTAATTGCACGTA
TTGTTTTATTTTCAGGGTTCGTCTTAAGTCGCCTTGGTCCCGCAGGAAAA
GAAAACATGCCCTTTCACCTCAGCAATGGAGGCTTTYCTTTACGCCTGAT
GGAAAGCTTCGAGATGGTGGAGTTAAGTTGGTGAAGAAAGTTCGCAGTGG
GGTGAGTYGCTGTCACATTCGTATTATACTTTTTGTGTTMAGAATGCTYT
AACATCTAATTTTTGTATGTATTCATGCTTCCATCATTGACGTTATTCAT
CTTAAATTGTTTTGAATGCAGGGTGTTGATCCAAGTATTAGGGCAGAAGT
TTGGCCATTCCTCCTTGGAGTGTAAGCATGTCCAACACCTCTTTTAAGTT
TTTAACTAAAACATTGCTGCATTAATACCTTGCATCTCTGAGATAGACCT
CGCTATGTGATATTTTGGCTTCACCATCAGGTGTTTTGGTGTATCATTCC
TAGCAGAGGATTATATGCTCTTTCCCTACTATTCGTGTAGATTATTGCTT
CTAGACGTCTCATTAGGTCCAAATCAAACATAATGACTGCTAGATACATG
AGCTTTTATTTAGGTCTGGTTCTGGGTTGGGAGCAGCTCATTTTAGGCTT
AGACCTGACATTTTGTGCTTTTGAACACTTCGTTGTGTAGTCAATGTAAG
AGTCAAAGCTTCAAGAAAGTATTTTTTTCTCCACTTAAGAAGTGTAATGC
GATTCCTTCTGAGTTGATGRCATGAGTTTTTGAAATAAAATCTGACCACT
GTRCTGATTCCTGTTCTGCATATACATTAAAATGTTGTTTTCGGAAAGTG
ATGAAACCATACGTRCATATGTTGACTGGATTTCTCTGTCTCAACAGCTA
TGAATTAAACAGTTCAAAAGAAGAAAGAGATGTTGTAAGATCTCAGAAAA
GGTACTAATGCCAATTCCATWTAGTTTCTTTTGTAGCTTTATGTTGCATA
AGTTGAATAAATTCTCTCCAGTTTAGTAATTCTCTGTTTCTTATCCATTG
GCCTTGCTAAATTTATGGTACGTTGTTCGAATATTTTGTTGCAGAAAGGA
ATATGAGAAACTCCGCAGACAGTGCCGCCGACTCACAAAGCGCAAAAATG
ATAGCTCCAAGTTGAATGGGGACAGTTGTAGATTCACCCATGATACAGAT
TCACCCAGCTCTGAGGATGTGGTTAGCGCCAGGGAATCCCTTTCTAGTGA
AGATAAGATACCAGATGCTGAATACTCAGATGACCCTTCCAGTACGTTGT
TGGATGGAGATGATGATGGTTCAAGAGAAAACACAAATGCGGATGCCAAA
GACTCTGACTCATCTGACTCGGACTCCTCTGAAGAACCTGAGGTGATTCA
GGCTTTCCCCTCATGTGAAGGGAGGGAAGAAAATRATCCTGATGTGAYTT
CCAAGGATGAATCTTCTCCCTTGAGGACGGAAGTCCAACCAAAGCTAAAC
AGTGAGGATTTTGCCACATGGCAGCGGATCATACGCCTTGATGCAATACG
AACTAATTCAGATTGGATTCCGCACTCCCCATCTCAAGCTGAAGTGTCAC
ACGATAGGGCATCACGTTCTGCTGAGGCTGTTGGGTTGAAAGATTACAGT
CACTTGGAGCCTTGCAGAATTTTCCATGCTGCTAGACTAGTTGCTATTCT
TGAAGCATATGCACTCTATGATCCCGAAATTGGTTACTGCCAGGGTATGA
GTGACCTGCTTTCTCCTATAGCTGCTGTAATAACAGAGGATCACGAGGCT
TTCTGGTGTTTTGTCGGTTTCATGAAGAAGGCTCGACATAATTTTAGGCT
TGACGAGGTAGGGATCCGAAAGCAGTTGAGTATCGTTTCTAAGATTATCA
AATGTAAGGACTCCCACCTATACAGGCACTTGGAGAAGCTCCAGGCGGAG
GATTGCTTTTTCGTTTATCGGATGGTGGTTGTGCTATTTAGAAGAGAGTT
AACATTCGAACAGACAGTATGCCTCTGGGAGGTAATGTGGGCCGATCAAG
CAGCCATTAGGGCAGGGATYGGAAAATCTGCGTGGAGCAGGATAAGGCAA
CGRGCCCCACCAACAGACGATTTGTTACTTTTTGCAATCGCAGCTTCYGT
RTTGCAGAAGAGGAAACTGATMATCGAAAAGTACAGCAGCATGGATGAGA
TTATCCGGGAGTGCAACAGCATGTCCGGGCAACTTGATATATGGAAGCTC
CTCGACGATGCACATGACTTGGTGGTAAACCTCCATGACAAGATAGAGAC
ATCTTTCTCATGA

Coding sequence (CDS) from alignment at MDC022149.74:13306..18718+

>MDP0000309310 ID=MDP0000309310; Name=MDP0000309310; organism=Malus x domestica; type=CDS; length=1950bp; location=Sequence derived from: MDC022149.74:13306..18718+ (Malus x domestica
ATGGTGGTGGTGCYGACGAYGACGRCTATGATGRTGGTAGAGGATGATTG
TGTGAACAATGGTTATGAGGGATGTGGAGGTGGTGATGACCATGGTGGYA
GGATTATGGCGATGCATAATATGATGGYGTCGGAGTTGGGGGTAAAATTA
TTAAATTTAAAATCCTCAATTCATCCCAACCTCCTCCCTGTCCTTGCTCT
CCCACAAGAAGCAGCAGATCACAAGGGCATTTCTGTCATTCACGACCCTG
CTCACATGATCGCCTCCGGTTCCGGAAACGCCTTCATCTCCGGCGGAGGA
GGGTTATGGGCGGCGGCGCCGTCGTACATGACCATCGGCGTCACGGCCTT
GGCTGGGCTCGCGGTGGTCGTGGCCGTGTTCTGCACTGCCACTAGAGCTC
TACGACGAACTCACACTTCGTCGTCGCCTTCGAGCTCGAATTCATCTCCT
TCTTCGTCTTCGTCGTCGTCTTCGTGGATTTATTTGCGTTCGGTTCTGTT
AGTCGTGTCATCTTCTTCACCAGCTCATTGTTCTTCCTCTGATCGGGTTC
GTCTTAAGTCGCCTTGGTCCCGCAGGAAAAGAAAACATGCCCTTTCACCT
CAGCAATGGAGGCTTTYCTTTACGCCTGATGGAAAGCTTCGAGATGGTGG
AGTTAAGTTGGTGAAGAAAGTTCGCAGTGGGGGTGTTGATCCAAGTATTA
GGGCAGAAGTTTGGCCATTCCTCCTTGGAGTAAAGGAATATGAGAAACTC
CGCAGACAGTGCCGCCGACTCACAAAGCGCAAAAATGATAGCTCCAAGTT
GAATGGGGACAGTTGTAGATTCACCCATGATACAGATTCACCCAGCTCTG
AGGATGTGGTTAGCGCCAGGGAATCCCTTTCTAGTGAAGATAAGATACCA
GATGCTGAATACTCAGATGACCCTTCCAGTACGTTGTTGGATGGAGATGA
TGATGGTTCAAGAGAAAACACAAATGCGGATGCCAAAGACTCTGACTCAT
CTGACTCGGACTCCTCTGAAGAACCTGAGGTGATTCAGGCTTTCCCCTCA
TGTGAAGGGAGGGAAGAAAATRATCCTGATGTGAYTTCCAAGGATGAATC
TTCTCCCTTGAGGACGGAAGTCCAACCAAAGCTAAACAGTGAGGATTTTG
CCACATGGCAGCGGATCATACGCCTTGATGCAATACGAACTAATTCAGAT
TGGATTCCGCACTCCCCATCTCAAGCTGAAGTGTCACACGATAGGGCATC
ACGTTCTGCTGAGGCTGTTGGGTTGAAAGATTACAGTCACTTGGAGCCTT
GCAGAATTTTCCATGCTGCTAGACTAGTTGCTATTCTTGAAGCATATGCA
CTCTATGATCCCGAAATTGGTTACTGCCAGGGTATGAGTGACCTGCTTTC
TCCTATAGCTGCTGTAATAACAGAGGATCACGAGGCTTTCTGGTGTTTTG
TCGGTTTCATGAAGAAGGCTCGACATAATTTTAGGCTTGACGAGGTAGGG
ATCCGAAAGCAGTTGAGTATCGTTTCTAAGATTATCAAATGTAAGGACTC
CCACCTATACAGGCACTTGGAGAAGCTCCAGGCGGAGGATTGCTTTTTCG
TTTATCGGATGGTGGTTGTGCTATTTAGAAGAGAGTTAACATTCGAACAG
ACAGTATGCCTCTGGGAGGTAATGTGGGCCGATCAAGCAGCCATTAGGGC
AGGGATYGGAAAATCTGCGTGGAGCAGGATAAGGCAACGRGCCCCACCAA
CAGACGATTTGTTACTTTTTGCAATCGCAGCTTCYGTRTTGCAGAAGAGG
AAACTGATMATCGAAAAGTACAGCAGCATGGATGAGATTATCCGGGAGTG
CAACAGCATGTCCGGGCAACTTGATATATGGAAGCTCCTCGACGATGCAC
ATGACTTGGTGGTAAACCTCCATGACAAGATAGAGACATCTTTCTCATGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000195	Rab-GAP-TBC_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005097	Rab GTPase activator activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure

Vocabulary: **Biological Process**
Term	Definition
GO:0032313	regulation of Rab GTPase activity