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Transcript Overview
Name | MDP0000318360 |
Unique Name | MDP0000318360 |
Type | mRNA |
Organism | Malus x domestica (Apple) |
Sequence length | 3051 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
MDP0000318360 | MDP0000318360 | Malus x domestica | polypeptide |
InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000719 | Protein kinase, catalytic domain | PFAM | PF00069 | Pkinase | coord: 341..547 score: 2.9 |
IPR000719 | Protein kinase, catalytic domain | PROFILE | PS50011 | PROTEIN_KINASE_DOM | coord: 337..610 score: 23 |
IPR002290 | Serine/threonine- / dual-specificity protein kinase, catalytic domain | SMART | SM00220 | Serine/Threonine protein kinases, catalytic | coord: 337..611 score: 3.6 |
IPR011009 | Protein kinase-like domain | SUPERFAMILY | 56112 | Protein kinase-like (PK-like) | coord: 314..616 score: 2.5 |
IPR013210 | Leucine-rich repeat-containing N-terminal, type 2 | PFAM | PF08263 | LRRNT_2 | coord: 31..72 score: 6.2 |
IPR020635 | Tyrosine-protein kinase, catalytic domain | SMART | SM00219 | Tyrosine kinase, catalytic domain | coord: 341..607 score: 4.9 |
None | No IPR available | GENE3D | 1.10.510.10 | no description | coord: 412..620 score: 1.1 |
None | No IPR available | GENE3D | 3.30.200.20 | no description | coord: 340..408 score: 2.3 |
None | No IPR available | GENE3D | 3.80.10.10 | no description | coord: 35..236 score: 8 |
None | No IPR available | PANTHER | PTHR24420 | FAMILY NOT NAMED | coord: 14..644 score: 3.1e |
None | No IPR available | PANTHER | PTHR24420:SF738 | SUBFAMILY NOT NAMED | coord: 14..644 score: 3.1e |
None | No IPR available | PFAM | PF13855 | LRR_8 | coord: 124..183 score: 2.6 |
None | No IPR available | SEG | seg | seg | coord: 235..260 score: NAcoord: 298..311 score: NAcoord: 313..319 score: NAcoord: 618..631 score |
None | No IPR available | SUPERFAMILY | 52058 | L domain-like | coord: 27..239 score: 5.6 |
None | No IPR available | SEG | seg | seg | coord: 28..35 score |
None | No IPR available | SEG | seg | seg | coord: 42..56 score |
None | No IPR available | SEG | seg | seg | coord: 45..56 score: NAcoord: 121..135 score |
None | No IPR available | SEG | seg | seg | coord: 9..29 score |
None | No IPR available | SEG | seg | seg | coord: 30..40 score |
None | No IPR available | SEG | seg | seg | coord: 50..57 score: NAcoord: 60..83 score |
None | No IPR available | SEG | seg | seg | coord: 47..54 score: NAcoord: 82..99 score |
None | No IPR available | SEG | seg | seg | coord: 32..49 score |
None | No IPR available | SEG | seg | seg | coord: 32..54 score |
Sequences
The
following sequences are available for this feature:
mRNA sequence >MDP0000318360 ID=MDP0000318360; Name=MDP0000318360; organism=Malus x domestica; type=mRNA; length=3051bp ATGGCTCATATTCACAAAGCATATGATCACCATCACTGGCTTTTCATGCT AATTTTCTTAGTATTATCGTACGTTGCTTCATCTTCGGACCCGACGGAGG CAGCCACCCTCCTCAAGTTCAAGTCATCTCTATTGAACGCCACTGCTCTG GACAATTGGACTAATGCCACACCTCCATGCAACGGCACGGACAACTGGGC AGGTCTGTATTGTGATCACGATGACAATGTGTTCGGGTTGAATTTATCGA AGATGGGTCTACGGGGGATCATCGATATAGACGCACTTTTGAATTTATCT GGCCTGAAAACCGTAAGCGTCATGAACAATAGCTTTGACGGGCCTATCCC TAGTGTGAACAAACTTAGTTCACTTGTGTCATTTTACTTGTCGTACAATA ACTTCTCTGGTGAAATCCCAGAAGACTTTTTTGTTGGGATGAATTCCTTG AAGAAAATTTATTTGGATGGGAATGAATTCACGGGGAAAATACCAAAGTC GTTGGCTGCATTGACTAAGATTGTGGAATTGGATATTCGGGGAAACCAAT TCAGTGGGAAGCTACCAAAATTTTCACAAAATCCAAAGGCATGGAAAACT ATGAATGTGTCATACAACAGACTCGAGGGTCGTATTCCGGCAAGCCTGAG AAATTCCGACCCAAGCGCTTTCCTCGGTAAGTAATCAGTTCAAGAATTTC ATTATTTCATTATTGTCCATCTTTTAGTTTAGAATTCTTTATTTTTTTTC AGTTTTCAGCTAGTACAGAATACATGATTTTCCTTTAAATGTGTTTCTAA GTTCAGAATTTGACAATAAAATTGTGCTTTTACACATCCACTTATGGGCG AACTAGCAAATTGATGTGCACGATTACTCTATTTCTTTGTCGCAGTGAGA ACTTCTTTTTCAATAGTCTCTTATTATGAGATACGATTGCAGTKGTTGAT ATGTATGTGAATTTCACTACRAATTAATATACATCAACGGTTGAYAATCG TTCATGCACGTGTAAATAACTATCGTTAAYAGTCACTTAAAATGTATTTA RTTGTGTATTTGAGTGTGAGAAGGGGAAATTCGGTCTAAATGTCATGTTA ACTAATGAAATATATTAGAAAAAATGTAATYGCATGATTTTGTACTTTCA TATTAGAACTAAAAGTTTGAAACATTAACAAAAGAAGGAAAATCAAGACC TTCTAATCAATTTTAAGTAGAAGAAAAAATTGATTCGTTGACAAAAACAT TTAGACATGCTCCTTCATCATTGAAACTTGATCTCCTCAAACACGATTTT TTTTATATAATGGMAGCACGTCGATACAATGTCATTATCTTTTGTTTATT AAGCAAATTGCTTTTATCAAACAAAATGGGTTCTTTCCRTTTTTAGTTTC TTGGGCCTAATTATGGGCCTCTTGTGTTGACCAAACAGGAAACCTAGACT TGTGTGGGAAGCCACTGGCTGCGTGCAAGTCMTCAAAGAAGAAACTCCTC CTAATCATCGCCGTCACAGTCATCTCAGTGGCTGTAATCTTGTTCATTGC AGCATGCCTCGAACGACGCCGTTCAGCACAATCAAAACAAGTAACAAGAG TACAAGACAAACTAGGGGCTCACCATGACACAGGTGCAATGGAGGTCCAA TTGGCAGCTGAAGAAGAAAATAACAACTTCCATAACAATGCTGAGAGAGG AGGAGGAGGAGGAGGAGGAGAGTTGTATTTTGTGCAGCAGGACAGAAATT TTGAGTTGGAAGAGTTGCTGAGGGCCCCAGCTGAGGTTTTGGGGAGTGGG TCCTTTGGGTCATCTTACAAGGCAGGGATTTTGAGTGGGTCCGTGGTTGT GAAGAAGTTTAGGCAAATGAACCAAGTGAGGAAAGATGAATTTTATGACC ACATGAGAAGGCTTGGGAGGTTGTCACACCCTAATTTGCTCCCACTTATT GCCTTCTATTACAGGAAAGAAGAGAAGCTCTTGGTTCATGCTTTTGTTGC CAATGGAAGCTTGGCTAGTCACCTCCATGGTATGTTCATAACCCTAACAT TGCATTGCATATCATTACATTACTAATCACACATTTCACAAATTAAGTTG AGCTTCAAGTAGAATTTATATGAATAAGTGGGTATTATTTATGTAYGAGA TAAGATTAACAATGTGATTAGTRAATGTGGTACATATTATCTGTTTGTAG ATAATTATATAATKTAATAATTTGGTATCTATCTTATTCTTGCTAACGTT TGCTAGACTCRRTCAATTAGTACAATATTGGCCAACTTTCCAACCAATTA GAACTCGTTTGATCACATTATTGATTACATYTCAAACACTATTGCACTTA ATTAACTTGATGTTTTCCATGTATTTTCAGTTAAGCGAGAACCCGGGCAG CCAGGATTGGATTGGGCAACTCGGTTGATGATCATCAAAGGAGTGGCAAG GGGCTTGGCCTACYTCTACAGAGAGTTCCCCGGCTTAACCGTACCCCATG GTCACCTCAAGTCTTCCAACGTGCTCCTAGACAACAACTTCAACCCCCTC TTAGCAGAATATGCCCTCATACCCTTAATCAACAGAGACCATGCACAAAA GTTCATGGTGGCCTTCAAGTCCCCGGAGTTCTACCACACCGAACGCACGT TGAAAAAGACCGATGTATGGAGCCTAGGCATACTCATCTTAGAAATGCTC ACCGGAAAATTCCCAGCAAACTATCTCCAACCGGGGAAGCGAGCGAATGC AGACTTGGCGGCTTGGGTGAACTCGGTTGTGAGGGAAGAGTGGACGGGTG AAGTGTTTGACAAGGACATGAAGGGGACGAAGAACGGGGAAGGCGAAATG CTGAAGCTGCTAAAGATTGGGATGTGTTGCTGTGAGAGCAATGTGGAGGG GAGGTGGGATTGGAGAGAAGTTGTGGACAAGATTGAACAGTTGAAGGAGA GGGATACTGATGAAGATTACTCTTCTTATGCTAGTGATGGGGATGCGTAT TCTTCTAGGGTTATTTCTGAGGATGACTTGTCTTTCTCTGTCACTGCTTG A back to topprotein sequence of MDP0000318360 >MDP0000318360 ID=MDP0000318360; Name=MDP0000318360; organism=Malus x domestica; type=polypeptide; length=645bp MAHIHKAYDHHHWLFMLIFLVLSYVASSSDPTEAATLLKFKSSLLNATAL DNWTNATPPCNGTDNWAGLYCDHDDNVFGLNLSKMGLRGIIDIDALLNLS GLKTVSVMNNSFDGPIPSVNKLSSLVSFYLSYNNFSGEIPEDFFVGMNSL KKIYLDGNEFTGKIPKSLAALTKIVELDIRGNQFSGKLPKFSQNPKAWKT MNVSYNRLEGRIPASLRNSDPSAFLGNLDLCGKPLAACKSSKKKLLLIIA VTVISVAVILFIAACLERRRSAQSKQVTRVQDKLGAHHDTGAMEVQLAAE EENNNFHNNAERGGGGGGGELYFVQQDRNFELEELLRAPAEVLGSGSFGS SYKAGILSGSVVVKKFRQMNQVRKDEFYDHMRRLGRLSHPNLLPLIAFYY RKEEKLLVHAFVANGSLASHLHVKREPGQPGLDWATRLMIIKGVARGLAY XYREFPGLTVPHGHLKSSNVLLDNNFNPLLAEYALIPLINRDHAQKFMVA FKSPEFYHTERTLKKTDVWSLGILILEMLTGKFPANYLQPGKRANADLAA WVNSVVREEWTGEVFDKDMKGTKNGEGEMLKLLKIGMCCCESNVEGRWDW REVVDKIEQLKERDTDEDYSSYASDGDAYSSRVISEDDLSFSVTA back to topmRNA from alignment at chr15:4157067..4160117- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000318360 ID=MDP0000318360; Name=MDP0000318360; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:4157067..4160117- (Malus x domestica
back to topmRNA from alignment at MDC027625.23:5434..8484- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000318360 ID=MDP0000318360; Name=MDP0000318360; organism=Malus x domestica; type=mRNA; length=3051bp; location=Sequence derived from: MDC027625.23:5434..8484- (Malus x domestica ATGGCTCATATTCACAAAGCATATGATCACCATCACTGGCTTTTCATGCT
AATTTTCTTAGTATTATCGTACGTTGCTTCATCTTCGGACCCGACGGAGG
CAGCCACCCTCCTCAAGTTCAAGTCATCTCTATTGAACGCCACTGCTCTG
GACAATTGGACTAATGCCACACCTCCATGCAACGGCACGGACAACTGGGC
AGGTCTGTATTGTGATCACGATGACAATGTGTTCGGGTTGAATTTATCGA
AGATGGGTCTACGGGGGATCATCGATATAGACGCACTTTTGAATTTATCT
GGCCTGAAAACCGTAAGCGTCATGAACAATAGCTTTGACGGGCCTATCCC
TAGTGTGAACAAACTTAGTTCACTTGTGTCATTTTACTTGTCGTACAATA
ACTTCTCTGGTGAAATCCCAGAAGACTTTTTTGTTGGGATGAATTCCTTG
AAGAAAATTTATTTGGATGGGAATGAATTCACGGGGAAAATACCAAAGTC
GTTGGCTGCATTGACTAAGATTGTGGAATTGGATATTCGGGGAAACCAAT
TCAGTGGGAAGCTACCAAAATTTTCACAAAATCCAAAGGCATGGAAAACT
ATGAATGTGTCATACAACAGACTCGAGGGTCGTATTCCGGCAAGCCTGAG
AAATTCCGACCCAAGCGCTTTCCTCGGTAAGTAATCAGTTCAAGAATTTC
ATTATTTCATTATTGTCCATCTTTTAGTTTAGAATTCTTTATTTTTTTTC
AGTTTTCAGCTAGTACAGAATACATGATTTTCCTTTAAATGTGTTTCTAA
GTTCAGAATTTGACAATAAAATTGTGCTTTTACACATCCACTTATGGGCG
AACTAGCAAATTGATGTGCACGATTACTCTATTTCTTTGTCGCAGTGAGA
ACTTCTTTTTCAATAGTCTCTTATTATGAGATACGATTGCAGTKGTTGAT
ATGTATGTGAATTTCACTACRAATTAATATACATCAACGGTTGAYAATCG
TTCATGCACGTGTAAATAACTATCGTTAAYAGTCACTTAAAATGTATTTA
RTTGTGTATTTGAGTGTGAGAAGGGGAAATTCGGTCTAAATGTCATGTTA
ACTAATGAAATATATTAGAAAAAATGTAATYGCATGATTTTGTACTTTCA
TATTAGAACTAAAAGTTTGAAACATTAACAAAAGAAGGAAAATCAAGACC
TTCTAATCAATTTTAAGTAGAAGAAAAAATTGATTCGTTGACAAAAACAT
TTAGACATGCTCCTTCATCATTGAAACTTGATCTCCTCAAACACGATTTT
TTTTATATAATGGMAGCACGTCGATACAATGTCATTATCTTTTGTTTATT
AAGCAAATTGCTTTTATCAAACAAAATGGGTTCTTTCCRTTTTTAGTTTC
TTGGGCCTAATTATGGGCCTCTTGTGTTGACCAAACAGGAAACCTAGACT
TGTGTGGGAAGCCACTGGCTGCGTGCAAGTCMTCAAAGAAGAAACTCCTC
CTAATCATCGCCGTCACAGTCATCTCAGTGGCTGTAATCTTGTTCATTGC
AGCATGCCTCGAACGACGCCGTTCAGCACAATCAAAACAAGTAACAAGAG
TACAAGACAAACTAGGGGCTCACCATGACACAGGTGCAATGGAGGTCCAA
TTGGCAGCTGAAGAAGAAAATAACAACTTCCATAACAATGCTGAGAGAGG
AGGAGGAGGAGGAGGAGGAGAGTTGTATTTTGTGCAGCAGGACAGAAATT
TTGAGTTGGAAGAGTTGCTGAGGGCCCCAGCTGAGGTTTTGGGGAGTGGG
TCCTTTGGGTCATCTTACAAGGCAGGGATTTTGAGTGGGTCCGTGGTTGT
GAAGAAGTTTAGGCAAATGAACCAAGTGAGGAAAGATGAATTTTATGACC
ACATGAGAAGGCTTGGGAGGTTGTCACACCCTAATTTGCTCCCACTTATT
GCCTTCTATTACAGGAAAGAAGAGAAGCTCTTGGTTCATGCTTTTGTTGC
CAATGGAAGCTTGGCTAGTCACCTCCATGGTATGTTCATAACCCTAACAT
TGCATTGCATATCATTACATTACTAATCACACATTTCACAAATTAAGTTG
AGCTTCAAGTAGAATTTATATGAATAAGTGGGTATTATTTATGTAYGAGA
TAAGATTAACAATGTGATTAGTRAATGTGGTACATATTATCTGTTTGTAG
ATAATTATATAATKTAATAATTTGGTATCTATCTTATTCTTGCTAACGTT
TGCTAGACTCRRTCAATTAGTACAATATTGGCCAACTTTCCAACCAATTA
GAACTCGTTTGATCACATTATTGATTACATYTCAAACACTATTGCACTTA
ATTAACTTGATGTTTTCCATGTATTTTCAGTTAAGCGAGAACCCGGGCAG
CCAGGATTGGATTGGGCAACTCGGTTGATGATCATCAAAGGAGTGGCAAG
GGGCTTGGCCTACYTCTACAGAGAGTTCCCCGGCTTAACCGTACCCCATG
GTCACCTCAAGTCTTCCAACGTGCTCCTAGACAACAACTTCAACCCCCTC
TTAGCAGAATATGCCCTCATACCCTTAATCAACAGAGACCATGCACAAAA
GTTCATGGTGGCCTTCAAGTCCCCGGAGTTCTACCACACCGAACGCACGT
TGAAAAAGACCGATGTATGGAGCCTAGGCATACTCATCTTAGAAATGCTC
ACCGGAAAATTCCCAGCAAACTATCTCCAACCGGGGAAGCGAGCGAATGC
AGACTTGGCGGCTTGGGTGAACTCGGTTGTGAGGGAAGAGTGGACGGGTG
AAGTGTTTGACAAGGACATGAAGGGGACGAAGAACGGGGAAGGCGAAATG
CTGAAGCTGCTAAAGATTGGGATGTGTTGCTGTGAGAGCAATGTGGAGGG
GAGGTGGGATTGGAGAGAAGTTGTGGACAAGATTGAACAGTTGAAGGAGA
GGGATACTGATGAAGATTACTCTTCTTATGCTAGTGATGGGGATGCGTAT
TCTTCTAGGGTTATTTCTGAGGATGACTTGTCTTTCTCTGTCACTGCTTG
A back to topCoding sequence (CDS) from alignment at MDC027625.23:5434..8484- >MDP0000318360 ID=MDP0000318360; Name=MDP0000318360; organism=Malus x domestica; type=CDS; length=1938bp; location=Sequence derived from: MDC027625.23:5434..8484- (Malus x domestica ATGGCTCATATTCACAAAGCATATGATCACCATCACTGGCTTTTCATGCT AATTTTCTTAGTATTATCGTACGTTGCTTCATCTTCGGACCCGACGGAGG CAGCCACCCTCCTCAAGTTCAAGTCATCTCTATTGAACGCCACTGCTCTG GACAATTGGACTAATGCCACACCTCCATGCAACGGCACGGACAACTGGGC AGGTCTGTATTGTGATCACGATGACAATGTGTTCGGGTTGAATTTATCGA AGATGGGTCTACGGGGGATCATCGATATAGACGCACTTTTGAATTTATCT GGCCTGAAAACCGTAAGCGTCATGAACAATAGCTTTGACGGGCCTATCCC TAGTGTGAACAAACTTAGTTCACTTGTGTCATTTTACTTGTCGTACAATA ACTTCTCTGGTGAAATCCCAGAAGACTTTTTTGTTGGGATGAATTCCTTG AAGAAAATTTATTTGGATGGGAATGAATTCACGGGGAAAATACCAAAGTC GTTGGCTGCATTGACTAAGATTGTGGAATTGGATATTCGGGGAAACCAAT TCAGTGGGAAGCTACCAAAATTTTCACAAAATCCAAAGGCATGGAAAACT ATGAATGTGTCATACAACAGACTCGAGGGTCGTATTCCGGCAAGCCTGAG AAATTCCGACCCAAGCGCTTTCCTCGGAAACCTAGACTTGTGTGGGAAGC CACTGGCTGCGTGCAAGTCMTCAAAGAAGAAACTCCTCCTAATCATCGCC GTCACAGTCATCTCAGTGGCTGTAATCTTGTTCATTGCAGCATGCCTCGA ACGACGCCGTTCAGCACAATCAAAACAAGTAACAAGAGTACAAGACAAAC TAGGGGCTCACCATGACACAGGTGCAATGGAGGTCCAATTGGCAGCTGAA GAAGAAAATAACAACTTCCATAACAATGCTGAGAGAGGAGGAGGAGGAGG AGGAGGAGAGTTGTATTTTGTGCAGCAGGACAGAAATTTTGAGTTGGAAG AGTTGCTGAGGGCCCCAGCTGAGGTTTTGGGGAGTGGGTCCTTTGGGTCA TCTTACAAGGCAGGGATTTTGAGTGGGTCCGTGGTTGTGAAGAAGTTTAG GCAAATGAACCAAGTGAGGAAAGATGAATTTTATGACCACATGAGAAGGC TTGGGAGGTTGTCACACCCTAATTTGCTCCCACTTATTGCCTTCTATTAC AGGAAAGAAGAGAAGCTCTTGGTTCATGCTTTTGTTGCCAATGGAAGCTT GGCTAGTCACCTCCATGTTAAGCGAGAACCCGGGCAGCCAGGATTGGATT GGGCAACTCGGTTGATGATCATCAAAGGAGTGGCAAGGGGCTTGGCCTAC YTCTACAGAGAGTTCCCCGGCTTAACCGTACCCCATGGTCACCTCAAGTC TTCCAACGTGCTCCTAGACAACAACTTCAACCCCCTCTTAGCAGAATATG CCCTCATACCCTTAATCAACAGAGACCATGCACAAAAGTTCATGGTGGCC TTCAAGTCCCCGGAGTTCTACCACACCGAACGCACGTTGAAAAAGACCGA TGTATGGAGCCTAGGCATACTCATCTTAGAAATGCTCACCGGAAAATTCC CAGCAAACTATCTCCAACCGGGGAAGCGAGCGAATGCAGACTTGGCGGCT TGGGTGAACTCGGTTGTGAGGGAAGAGTGGACGGGTGAAGTGTTTGACAA GGACATGAAGGGGACGAAGAACGGGGAAGGCGAAATGCTGAAGCTGCTAA AGATTGGGATGTGTTGCTGTGAGAGCAATGTGGAGGGGAGGTGGGATTGG AGAGAAGTTGTGGACAAGATTGAACAGTTGAAGGAGAGGGATACTGATGA AGATTACTCTTCTTATGCTAGTGATGGGGATGCGTATTCTTCTAGGGTTA TTTCTGAGGATGACTTGTCTTTCTCTGTCACTGCTTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0006468 | protein phosphorylation |
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