MDP0000318360, MDP0000318360 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000318360
Unique NameMDP0000318360
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length3051
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000318360_exon_1MDP0000318360_exon_1Malus x domesticaCDS
MDP0000318360_exon_2MDP0000318360_exon_2Malus x domesticaCDS
MDP0000318360_exon_3MDP0000318360_exon_3Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000318360MDP0000318360Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000719Protein kinase, catalytic domainPFAMPF00069Pkinasecoord: 341..547
score: 2.9
IPR000719Protein kinase, catalytic domainPROFILEPS50011PROTEIN_KINASE_DOMcoord: 337..610
score: 23
IPR002290Serine/threonine- / dual-specificity protein kinase, catalytic domainSMARTSM00220Serine/Threonine protein kinases, catalyticcoord: 337..611
score: 3.6
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 314..616
score: 2.5
IPR013210Leucine-rich repeat-containing N-terminal, type 2PFAMPF08263LRRNT_2coord: 31..72
score: 6.2
IPR020635Tyrosine-protein kinase, catalytic domainSMARTSM00219Tyrosine kinase, catalytic domaincoord: 341..607
score: 4.9
NoneNo IPR availableGENE3D1.10.510.10no descriptioncoord: 412..620
score: 1.1
NoneNo IPR availableGENE3D3.30.200.20no descriptioncoord: 340..408
score: 2.3
NoneNo IPR availableGENE3D3.80.10.10no descriptioncoord: 35..236
score: 8
NoneNo IPR availablePANTHERPTHR24420FAMILY NOT NAMEDcoord: 14..644
score: 3.1e
NoneNo IPR availablePANTHERPTHR24420:SF738SUBFAMILY NOT NAMEDcoord: 14..644
score: 3.1e
NoneNo IPR availablePFAMPF13855LRR_8coord: 124..183
score: 2.6
NoneNo IPR availableSEGsegsegcoord: 235..260
score: NAcoord: 298..311
score: NAcoord: 313..319
score: NAcoord: 618..631
score
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 27..239
score: 5.6
NoneNo IPR availableSEGsegsegcoord: 28..35
score
NoneNo IPR availableSEGsegsegcoord: 42..56
score
NoneNo IPR availableSEGsegsegcoord: 45..56
score: NAcoord: 121..135
score
NoneNo IPR availableSEGsegsegcoord: 9..29
score
NoneNo IPR availableSEGsegsegcoord: 30..40
score
NoneNo IPR availableSEGsegsegcoord: 50..57
score: NAcoord: 60..83
score
NoneNo IPR availableSEGsegsegcoord: 47..54
score: NAcoord: 82..99
score
NoneNo IPR availableSEGsegsegcoord: 32..49
score
NoneNo IPR availableSEGsegsegcoord: 32..54
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000318360 ID=MDP0000318360; Name=MDP0000318360; organism=Malus x domestica; type=mRNA; length=3051bp
ATGGCTCATATTCACAAAGCATATGATCACCATCACTGGCTTTTCATGCT
AATTTTCTTAGTATTATCGTACGTTGCTTCATCTTCGGACCCGACGGAGG
CAGCCACCCTCCTCAAGTTCAAGTCATCTCTATTGAACGCCACTGCTCTG
GACAATTGGACTAATGCCACACCTCCATGCAACGGCACGGACAACTGGGC
AGGTCTGTATTGTGATCACGATGACAATGTGTTCGGGTTGAATTTATCGA
AGATGGGTCTACGGGGGATCATCGATATAGACGCACTTTTGAATTTATCT
GGCCTGAAAACCGTAAGCGTCATGAACAATAGCTTTGACGGGCCTATCCC
TAGTGTGAACAAACTTAGTTCACTTGTGTCATTTTACTTGTCGTACAATA
ACTTCTCTGGTGAAATCCCAGAAGACTTTTTTGTTGGGATGAATTCCTTG
AAGAAAATTTATTTGGATGGGAATGAATTCACGGGGAAAATACCAAAGTC
GTTGGCTGCATTGACTAAGATTGTGGAATTGGATATTCGGGGAAACCAAT
TCAGTGGGAAGCTACCAAAATTTTCACAAAATCCAAAGGCATGGAAAACT
ATGAATGTGTCATACAACAGACTCGAGGGTCGTATTCCGGCAAGCCTGAG
AAATTCCGACCCAAGCGCTTTCCTCGGTAAGTAATCAGTTCAAGAATTTC
ATTATTTCATTATTGTCCATCTTTTAGTTTAGAATTCTTTATTTTTTTTC
AGTTTTCAGCTAGTACAGAATACATGATTTTCCTTTAAATGTGTTTCTAA
GTTCAGAATTTGACAATAAAATTGTGCTTTTACACATCCACTTATGGGCG
AACTAGCAAATTGATGTGCACGATTACTCTATTTCTTTGTCGCAGTGAGA
ACTTCTTTTTCAATAGTCTCTTATTATGAGATACGATTGCAGTKGTTGAT
ATGTATGTGAATTTCACTACRAATTAATATACATCAACGGTTGAYAATCG
TTCATGCACGTGTAAATAACTATCGTTAAYAGTCACTTAAAATGTATTTA
RTTGTGTATTTGAGTGTGAGAAGGGGAAATTCGGTCTAAATGTCATGTTA
ACTAATGAAATATATTAGAAAAAATGTAATYGCATGATTTTGTACTTTCA
TATTAGAACTAAAAGTTTGAAACATTAACAAAAGAAGGAAAATCAAGACC
TTCTAATCAATTTTAAGTAGAAGAAAAAATTGATTCGTTGACAAAAACAT
TTAGACATGCTCCTTCATCATTGAAACTTGATCTCCTCAAACACGATTTT
TTTTATATAATGGMAGCACGTCGATACAATGTCATTATCTTTTGTTTATT
AAGCAAATTGCTTTTATCAAACAAAATGGGTTCTTTCCRTTTTTAGTTTC
TTGGGCCTAATTATGGGCCTCTTGTGTTGACCAAACAGGAAACCTAGACT
TGTGTGGGAAGCCACTGGCTGCGTGCAAGTCMTCAAAGAAGAAACTCCTC
CTAATCATCGCCGTCACAGTCATCTCAGTGGCTGTAATCTTGTTCATTGC
AGCATGCCTCGAACGACGCCGTTCAGCACAATCAAAACAAGTAACAAGAG
TACAAGACAAACTAGGGGCTCACCATGACACAGGTGCAATGGAGGTCCAA
TTGGCAGCTGAAGAAGAAAATAACAACTTCCATAACAATGCTGAGAGAGG
AGGAGGAGGAGGAGGAGGAGAGTTGTATTTTGTGCAGCAGGACAGAAATT
TTGAGTTGGAAGAGTTGCTGAGGGCCCCAGCTGAGGTTTTGGGGAGTGGG
TCCTTTGGGTCATCTTACAAGGCAGGGATTTTGAGTGGGTCCGTGGTTGT
GAAGAAGTTTAGGCAAATGAACCAAGTGAGGAAAGATGAATTTTATGACC
ACATGAGAAGGCTTGGGAGGTTGTCACACCCTAATTTGCTCCCACTTATT
GCCTTCTATTACAGGAAAGAAGAGAAGCTCTTGGTTCATGCTTTTGTTGC
CAATGGAAGCTTGGCTAGTCACCTCCATGGTATGTTCATAACCCTAACAT
TGCATTGCATATCATTACATTACTAATCACACATTTCACAAATTAAGTTG
AGCTTCAAGTAGAATTTATATGAATAAGTGGGTATTATTTATGTAYGAGA
TAAGATTAACAATGTGATTAGTRAATGTGGTACATATTATCTGTTTGTAG
ATAATTATATAATKTAATAATTTGGTATCTATCTTATTCTTGCTAACGTT
TGCTAGACTCRRTCAATTAGTACAATATTGGCCAACTTTCCAACCAATTA
GAACTCGTTTGATCACATTATTGATTACATYTCAAACACTATTGCACTTA
ATTAACTTGATGTTTTCCATGTATTTTCAGTTAAGCGAGAACCCGGGCAG
CCAGGATTGGATTGGGCAACTCGGTTGATGATCATCAAAGGAGTGGCAAG
GGGCTTGGCCTACYTCTACAGAGAGTTCCCCGGCTTAACCGTACCCCATG
GTCACCTCAAGTCTTCCAACGTGCTCCTAGACAACAACTTCAACCCCCTC
TTAGCAGAATATGCCCTCATACCCTTAATCAACAGAGACCATGCACAAAA
GTTCATGGTGGCCTTCAAGTCCCCGGAGTTCTACCACACCGAACGCACGT
TGAAAAAGACCGATGTATGGAGCCTAGGCATACTCATCTTAGAAATGCTC
ACCGGAAAATTCCCAGCAAACTATCTCCAACCGGGGAAGCGAGCGAATGC
AGACTTGGCGGCTTGGGTGAACTCGGTTGTGAGGGAAGAGTGGACGGGTG
AAGTGTTTGACAAGGACATGAAGGGGACGAAGAACGGGGAAGGCGAAATG
CTGAAGCTGCTAAAGATTGGGATGTGTTGCTGTGAGAGCAATGTGGAGGG
GAGGTGGGATTGGAGAGAAGTTGTGGACAAGATTGAACAGTTGAAGGAGA
GGGATACTGATGAAGATTACTCTTCTTATGCTAGTGATGGGGATGCGTAT
TCTTCTAGGGTTATTTCTGAGGATGACTTGTCTTTCTCTGTCACTGCTTG
A
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protein sequence of MDP0000318360

>MDP0000318360 ID=MDP0000318360; Name=MDP0000318360; organism=Malus x domestica; type=polypeptide; length=645bp
MAHIHKAYDHHHWLFMLIFLVLSYVASSSDPTEAATLLKFKSSLLNATAL
DNWTNATPPCNGTDNWAGLYCDHDDNVFGLNLSKMGLRGIIDIDALLNLS
GLKTVSVMNNSFDGPIPSVNKLSSLVSFYLSYNNFSGEIPEDFFVGMNSL
KKIYLDGNEFTGKIPKSLAALTKIVELDIRGNQFSGKLPKFSQNPKAWKT
MNVSYNRLEGRIPASLRNSDPSAFLGNLDLCGKPLAACKSSKKKLLLIIA
VTVISVAVILFIAACLERRRSAQSKQVTRVQDKLGAHHDTGAMEVQLAAE
EENNNFHNNAERGGGGGGGELYFVQQDRNFELEELLRAPAEVLGSGSFGS
SYKAGILSGSVVVKKFRQMNQVRKDEFYDHMRRLGRLSHPNLLPLIAFYY
RKEEKLLVHAFVANGSLASHLHVKREPGQPGLDWATRLMIIKGVARGLAY
XYREFPGLTVPHGHLKSSNVLLDNNFNPLLAEYALIPLINRDHAQKFMVA
FKSPEFYHTERTLKKTDVWSLGILILEMLTGKFPANYLQPGKRANADLAA
WVNSVVREEWTGEVFDKDMKGTKNGEGEMLKLLKIGMCCCESNVEGRWDW
REVVDKIEQLKERDTDEDYSSYASDGDAYSSRVISEDDLSFSVTA
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mRNA from alignment at chr15:4157067..4160117-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000318360 ID=MDP0000318360; Name=MDP0000318360; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:4157067..4160117- (Malus x domestica
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mRNA from alignment at MDC027625.23:5434..8484-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000318360 ID=MDP0000318360; Name=MDP0000318360; organism=Malus x domestica; type=mRNA; length=3051bp; location=Sequence derived from: MDC027625.23:5434..8484- (Malus x domestica
ATGGCTCATATTCACAAAGCATATGATCACCATCACTGGCTTTTCATGCT AATTTTCTTAGTATTATCGTACGTTGCTTCATCTTCGGACCCGACGGAGG CAGCCACCCTCCTCAAGTTCAAGTCATCTCTATTGAACGCCACTGCTCTG GACAATTGGACTAATGCCACACCTCCATGCAACGGCACGGACAACTGGGC AGGTCTGTATTGTGATCACGATGACAATGTGTTCGGGTTGAATTTATCGA AGATGGGTCTACGGGGGATCATCGATATAGACGCACTTTTGAATTTATCT GGCCTGAAAACCGTAAGCGTCATGAACAATAGCTTTGACGGGCCTATCCC TAGTGTGAACAAACTTAGTTCACTTGTGTCATTTTACTTGTCGTACAATA ACTTCTCTGGTGAAATCCCAGAAGACTTTTTTGTTGGGATGAATTCCTTG AAGAAAATTTATTTGGATGGGAATGAATTCACGGGGAAAATACCAAAGTC GTTGGCTGCATTGACTAAGATTGTGGAATTGGATATTCGGGGAAACCAAT TCAGTGGGAAGCTACCAAAATTTTCACAAAATCCAAAGGCATGGAAAACT ATGAATGTGTCATACAACAGACTCGAGGGTCGTATTCCGGCAAGCCTGAG AAATTCCGACCCAAGCGCTTTCCTCGGTAAGTAATCAGTTCAAGAATTTC ATTATTTCATTATTGTCCATCTTTTAGTTTAGAATTCTTTATTTTTTTTC AGTTTTCAGCTAGTACAGAATACATGATTTTCCTTTAAATGTGTTTCTAA GTTCAGAATTTGACAATAAAATTGTGCTTTTACACATCCACTTATGGGCG AACTAGCAAATTGATGTGCACGATTACTCTATTTCTTTGTCGCAGTGAGA ACTTCTTTTTCAATAGTCTCTTATTATGAGATACGATTGCAGTKGTTGAT ATGTATGTGAATTTCACTACRAATTAATATACATCAACGGTTGAYAATCG TTCATGCACGTGTAAATAACTATCGTTAAYAGTCACTTAAAATGTATTTA RTTGTGTATTTGAGTGTGAGAAGGGGAAATTCGGTCTAAATGTCATGTTA ACTAATGAAATATATTAGAAAAAATGTAATYGCATGATTTTGTACTTTCA TATTAGAACTAAAAGTTTGAAACATTAACAAAAGAAGGAAAATCAAGACC TTCTAATCAATTTTAAGTAGAAGAAAAAATTGATTCGTTGACAAAAACAT TTAGACATGCTCCTTCATCATTGAAACTTGATCTCCTCAAACACGATTTT TTTTATATAATGGMAGCACGTCGATACAATGTCATTATCTTTTGTTTATT AAGCAAATTGCTTTTATCAAACAAAATGGGTTCTTTCCRTTTTTAGTTTC TTGGGCCTAATTATGGGCCTCTTGTGTTGACCAAACAGGAAACCTAGACT TGTGTGGGAAGCCACTGGCTGCGTGCAAGTCMTCAAAGAAGAAACTCCTC CTAATCATCGCCGTCACAGTCATCTCAGTGGCTGTAATCTTGTTCATTGC AGCATGCCTCGAACGACGCCGTTCAGCACAATCAAAACAAGTAACAAGAG TACAAGACAAACTAGGGGCTCACCATGACACAGGTGCAATGGAGGTCCAA TTGGCAGCTGAAGAAGAAAATAACAACTTCCATAACAATGCTGAGAGAGG AGGAGGAGGAGGAGGAGGAGAGTTGTATTTTGTGCAGCAGGACAGAAATT TTGAGTTGGAAGAGTTGCTGAGGGCCCCAGCTGAGGTTTTGGGGAGTGGG TCCTTTGGGTCATCTTACAAGGCAGGGATTTTGAGTGGGTCCGTGGTTGT GAAGAAGTTTAGGCAAATGAACCAAGTGAGGAAAGATGAATTTTATGACC ACATGAGAAGGCTTGGGAGGTTGTCACACCCTAATTTGCTCCCACTTATT GCCTTCTATTACAGGAAAGAAGAGAAGCTCTTGGTTCATGCTTTTGTTGC CAATGGAAGCTTGGCTAGTCACCTCCATGGTATGTTCATAACCCTAACAT TGCATTGCATATCATTACATTACTAATCACACATTTCACAAATTAAGTTG AGCTTCAAGTAGAATTTATATGAATAAGTGGGTATTATTTATGTAYGAGA TAAGATTAACAATGTGATTAGTRAATGTGGTACATATTATCTGTTTGTAG ATAATTATATAATKTAATAATTTGGTATCTATCTTATTCTTGCTAACGTT TGCTAGACTCRRTCAATTAGTACAATATTGGCCAACTTTCCAACCAATTA GAACTCGTTTGATCACATTATTGATTACATYTCAAACACTATTGCACTTA ATTAACTTGATGTTTTCCATGTATTTTCAGTTAAGCGAGAACCCGGGCAG CCAGGATTGGATTGGGCAACTCGGTTGATGATCATCAAAGGAGTGGCAAG GGGCTTGGCCTACYTCTACAGAGAGTTCCCCGGCTTAACCGTACCCCATG GTCACCTCAAGTCTTCCAACGTGCTCCTAGACAACAACTTCAACCCCCTC TTAGCAGAATATGCCCTCATACCCTTAATCAACAGAGACCATGCACAAAA GTTCATGGTGGCCTTCAAGTCCCCGGAGTTCTACCACACCGAACGCACGT TGAAAAAGACCGATGTATGGAGCCTAGGCATACTCATCTTAGAAATGCTC ACCGGAAAATTCCCAGCAAACTATCTCCAACCGGGGAAGCGAGCGAATGC AGACTTGGCGGCTTGGGTGAACTCGGTTGTGAGGGAAGAGTGGACGGGTG AAGTGTTTGACAAGGACATGAAGGGGACGAAGAACGGGGAAGGCGAAATG CTGAAGCTGCTAAAGATTGGGATGTGTTGCTGTGAGAGCAATGTGGAGGG GAGGTGGGATTGGAGAGAAGTTGTGGACAAGATTGAACAGTTGAAGGAGA GGGATACTGATGAAGATTACTCTTCTTATGCTAGTGATGGGGATGCGTAT TCTTCTAGGGTTATTTCTGAGGATGACTTGTCTTTCTCTGTCACTGCTTG A
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Coding sequence (CDS) from alignment at MDC027625.23:5434..8484-

>MDP0000318360 ID=MDP0000318360; Name=MDP0000318360; organism=Malus x domestica; type=CDS; length=1938bp; location=Sequence derived from: MDC027625.23:5434..8484- (Malus x domestica
ATGGCTCATATTCACAAAGCATATGATCACCATCACTGGCTTTTCATGCT
AATTTTCTTAGTATTATCGTACGTTGCTTCATCTTCGGACCCGACGGAGG
CAGCCACCCTCCTCAAGTTCAAGTCATCTCTATTGAACGCCACTGCTCTG
GACAATTGGACTAATGCCACACCTCCATGCAACGGCACGGACAACTGGGC
AGGTCTGTATTGTGATCACGATGACAATGTGTTCGGGTTGAATTTATCGA
AGATGGGTCTACGGGGGATCATCGATATAGACGCACTTTTGAATTTATCT
GGCCTGAAAACCGTAAGCGTCATGAACAATAGCTTTGACGGGCCTATCCC
TAGTGTGAACAAACTTAGTTCACTTGTGTCATTTTACTTGTCGTACAATA
ACTTCTCTGGTGAAATCCCAGAAGACTTTTTTGTTGGGATGAATTCCTTG
AAGAAAATTTATTTGGATGGGAATGAATTCACGGGGAAAATACCAAAGTC
GTTGGCTGCATTGACTAAGATTGTGGAATTGGATATTCGGGGAAACCAAT
TCAGTGGGAAGCTACCAAAATTTTCACAAAATCCAAAGGCATGGAAAACT
ATGAATGTGTCATACAACAGACTCGAGGGTCGTATTCCGGCAAGCCTGAG
AAATTCCGACCCAAGCGCTTTCCTCGGAAACCTAGACTTGTGTGGGAAGC
CACTGGCTGCGTGCAAGTCMTCAAAGAAGAAACTCCTCCTAATCATCGCC
GTCACAGTCATCTCAGTGGCTGTAATCTTGTTCATTGCAGCATGCCTCGA
ACGACGCCGTTCAGCACAATCAAAACAAGTAACAAGAGTACAAGACAAAC
TAGGGGCTCACCATGACACAGGTGCAATGGAGGTCCAATTGGCAGCTGAA
GAAGAAAATAACAACTTCCATAACAATGCTGAGAGAGGAGGAGGAGGAGG
AGGAGGAGAGTTGTATTTTGTGCAGCAGGACAGAAATTTTGAGTTGGAAG
AGTTGCTGAGGGCCCCAGCTGAGGTTTTGGGGAGTGGGTCCTTTGGGTCA
TCTTACAAGGCAGGGATTTTGAGTGGGTCCGTGGTTGTGAAGAAGTTTAG
GCAAATGAACCAAGTGAGGAAAGATGAATTTTATGACCACATGAGAAGGC
TTGGGAGGTTGTCACACCCTAATTTGCTCCCACTTATTGCCTTCTATTAC
AGGAAAGAAGAGAAGCTCTTGGTTCATGCTTTTGTTGCCAATGGAAGCTT
GGCTAGTCACCTCCATGTTAAGCGAGAACCCGGGCAGCCAGGATTGGATT
GGGCAACTCGGTTGATGATCATCAAAGGAGTGGCAAGGGGCTTGGCCTAC
YTCTACAGAGAGTTCCCCGGCTTAACCGTACCCCATGGTCACCTCAAGTC
TTCCAACGTGCTCCTAGACAACAACTTCAACCCCCTCTTAGCAGAATATG
CCCTCATACCCTTAATCAACAGAGACCATGCACAAAAGTTCATGGTGGCC
TTCAAGTCCCCGGAGTTCTACCACACCGAACGCACGTTGAAAAAGACCGA
TGTATGGAGCCTAGGCATACTCATCTTAGAAATGCTCACCGGAAAATTCC
CAGCAAACTATCTCCAACCGGGGAAGCGAGCGAATGCAGACTTGGCGGCT
TGGGTGAACTCGGTTGTGAGGGAAGAGTGGACGGGTGAAGTGTTTGACAA
GGACATGAAGGGGACGAAGAACGGGGAAGGCGAAATGCTGAAGCTGCTAA
AGATTGGGATGTGTTGCTGTGAGAGCAATGTGGAGGGGAGGTGGGATTGG
AGAGAAGTTGTGGACAAGATTGAACAGTTGAAGGAGAGGGATACTGATGA
AGATTACTCTTCTTATGCTAGTGATGGGGATGCGTATTCTTCTAGGGTTA
TTTCTGAGGATGACTTGTCTTTCTCTGTCACTGCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR002290Ser/Thr_dual-sp_kinase
IPR011009Kinase-like_dom_sf
IPR013210LRR_N_plant-typ
IPR020635Tyr_kinase_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0004713protein tyrosine kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation