MDP0000320566, MDP0000320566 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000320566
Unique Name	MDP0000320566
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	8744

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr1	chromosome	chr1:23895719..23904462 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC011829.158	contig	MDC011829.158:4916..13659 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000320566_exon_1	MDP0000320566_exon_1	Malus x domestica	CDS
MDP0000320566_exon_2	MDP0000320566_exon_2	Malus x domestica	CDS
MDP0000320566_exon_3	MDP0000320566_exon_3	Malus x domestica	CDS
MDP0000320566_exon_4	MDP0000320566_exon_4	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000320566	MDP0000320566	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000070	Pectinesterase, catalytic	PFAM	PF01095	Pectinesterase	coord: 162..457 score: 1.3e
IPR003441	No apical meristem (NAM) protein	PFAM	PF02365	NAM	coord: 475..599 score: 4.7
IPR003441	No apical meristem (NAM) protein	PROFILE	PS51005	NAC	coord: 475..618 score: 54
IPR003441	No apical meristem (NAM) protein	SUPERFAMILY	101941	NAC domain	coord: 459..617 score: 9.8
IPR006501	Pectinesterase inhibitor	GENE3D	1.20.140.40	no description	coord: 8..128 score: 1.8
IPR006501	Pectinesterase inhibitor	PFAM	PF04043	PMEI	coord: 12..126 score: 3.5
IPR006501	Pectinesterase inhibitor	SMART	SM00856	Plant invertase/pectin methylesterase inhibi	coord: 6..126 score: 2.4
IPR006501	Pectinesterase inhibitor	TIGRFAMs	TIGR01614	PME_inhib: pectinesterase inhibitor domain	coord: 14..128 score: 2.7
IPR006501	Pectinesterase inhibitor	SUPERFAMILY	101148	Plant invertase/pectin methylesterase inhibitor	coord: 13..128 score: 1.4
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 155..472 score: 2.1e
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10	no description	coord: 157..466 score: 1.6e
IPR018040	Pectinesterase, active site	PROSITE	PS00503	PECTINESTERASE_2	coord: 305..314 score
IPR018040	Pectinesterase, active site	PROSITE	PS00800	PECTINESTERASE_1	coord: 188..207 score
None	No IPR available	PANTHER	PTHR22931	FAMILY NOT NAMED	coord: 12..409 score: 1.8
None	No IPR available	PANTHER	PTHR22931:SF5	METHYLESTERASE INHIBITOR-RELATED	coord: 12..409 score: 1.8
None	No IPR available	SEG	seg	seg	coord: 178..185 score: NAcoord: 541..552 score
None	No IPR available	SEG	seg	seg	coord: 100..111 score
None	No IPR available	SEG	seg	seg	coord: 15..49 score
None	No IPR available	SEG	seg	seg	coord: 14..24 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:23895719..23904462-
mRNA from alignment at MDC011829.158:4916..13659-
coding sequence from alignment at MDC011829.158:4916..13659-

mRNA sequence

>MDP0000320566 ID=MDP0000320566; Name=MDP0000320566; organism=Malus x domestica; type=mRNA; length=8744bp
ATGACCCAAGACGAAAAATCTCTCTCTATCCCCAAACAACTATCCAACTT
CAAGAAACTTGCAGTCCAAGTAACATTAGAAAGAGCACTCAAAGCGCAAA
GTCACAACAAGTGGCTAGGGCAAAAGTGTAGAAACAAGAAAGAAAGAGCT
GCATGGGCTGACTGCATGAGCCTCTATGAGGAAACCATCAAACTCCTCAA
CCAAACCATAGACCCTGCCACAAAATCCACCGACTATGACACGCAAACTT
GGCTCAGCACTGCTCTCACGAACCTTGACACGTGTCGGGCTGGGTTCGTG
GAGCTTGAGGTTTCGGACTTTGTGTTTCCGCTCATGTCCAACAATGTGTC
CAAGCTGATAAGTAACACTTTGTCACTTTGGAATTCCTCAAATGTTTCAC
CGGTGACAAWTATGTACACAGAGGGTTATCCTAGTTGGGTTTCCCCTGGG
GATAGGAAACTGTTGCAGTCGACGCCCACAGCGGACGTAGTGGTCGCTCA
AGACGGGTCGGGGAACTATAAGACGATCAAAGCCGCTTTGGATGCTGCGG
CCGCAAGGGGTGGGAGTAAGAGGTTTGTGATACATGTGAAGAGAGGGGTT
TATAAGGAAAACCTTGAGATTAAGTTGAAGAMCATTTATCTGCTGGGTGA
TGGACTGAGGTATACTATTATCACCGGCAGCCGTAGTGTTGTTGGAGGTT
CTACAACTTTCAAGTCTGCAACTGTTGGTAAGTCATGACTCTCTGTCTCA
ATCACTAGTCTTCTCAAATGTCACAATGTATGTACCATTGAAATTGTCTC
AATAGAGCACAAAAGGTGTGGTAAATTGTTGACTTTTAATTGGTATAAGC
TTTTACTTTTTAAATTTATAACGGTTAATTTATGCATTACTCAATGATAT
GAACAAAAAAATAACAAAGTCAAAAACAAAATCYTCTACGAGCAGACATA
TAAACTTAGAACTTAACTACTACAAGATACATGTTCCCCTTGAACGACAT
ACATAGTTTATTTTAAAAGATTTGAACCCAAAAAGTAATACTAAAAATTC
ATATTTTCTAATTCTTGAWTTTTTTTGGGGGCCGGGTGTAATTACAGCGG
TAACTGGTGAAGGCTTCATTGCTCGTGGCATAACATTCCGCAACACAGCT
GGCCCAGAGAACCATCAAGCAGTAGCCCTCAGATCAGGCGCCGACCTCTC
AGTTTTCTACCGCTGCGGATTCGAAGGCTACCAAGATACCCTCTACACCC
ACTCCCAACGACAGTTCTACAGAGAATGCTATGTCTACGGCACCGTTGAT
TTTATCTTTGGCAACGCTGCGGTTGTTTTCCAAAACTGCATGATCTACGC
AAGAAAACCCATGAGTGGTCAACAGAACACAATCACAGCCCAAGGCCGAA
CGGACCCGAACCAGAACACGGGTATTTCTATCCACGACTCACGTGTCATG
GCCGCACTGGACCTTGAATCGTCCGTCGGCTCAGTCAAGACATTCTTGGG
TAGACCATGGAAGGAGTATTCACGCACAGTTTTTATGCAATCTTTTTTAG
ACACCCTGGTTGACCCAGCTGGGTGGCTCCAGTGGAGCGGTGATTTTGCT
TTGAAGACATTGTATTATGGAGAGTACAAGAACATTGGACCGGGTGCACC
TACTACTGGCAGGGTCAAGTGGGGTGGCTATCGAATTATAACTAGTTCAT
CGGAAGCATCGAAGTTTACTGTGGATAATTTCATTGCTGGAAGCTCATGG
TTGCCTGCTACAAATGKRCCWTTCACKGCTRRCCTTTGATCATACCATTG
CATGAACTGTGCCATTGTATAATTATGTCTCTAAGTTACTTATTYGACAA
TAAATTTTTTTTTAATTATTGTATCTAAAATTACTTAATGGAAATATAAA
AAAARAAAATCATTCTTGCTTAATGGAAATAAAAATAATAAAAATCATTC
TTGCAAAGTTAAAATGTGATTCTGAGTTTCTTTTATTTTTTCTTGGTTAC
ATAAGCAGCAAAAGCCCACCGCAACGAAGTAACAATCAAATGACACTGAG
TCGAGAAGGAGAAAATAAGAGTGATCAAATCAACACCCTTCACAATGAGA
AAAGACCTAAAATGTGGCAAAAACCTAAAAGTAACACCAATTTGGGTTTA
AGTTGGTGAGAAACTCAATCATTTGGATATTTAAGGGAGAGTGTAAGATR
CCCTAAAATCTGTAATAATCGAAACACAATTACGTAATATAYTATTCTAT
TCAGATTAAGATACTGAATTGTTTTTATTAGTAAACTCTAAAAATAAAAC
ATATCAATTATATCGTCTACGCTTACTATGACATGTGAAATAATACACAC
AAGATTTCTGTTTCTTCTTGCTTTTGCTTTGTGACGTGATGAAAATGTCA
TTTTGGATATGTAGTAAGCGACTATGACTATAGTCTTAATCATTTGAGCT
TTAACTATTCCTGCTTTAGTTGATCAGGTTTCATATTCACATAATCATGG
TAATAATAGTCATTACAATTTTCGAGGTGACATATAAACCAAAATGCAAT
CATATMTTCACATGTTTTGTACTTATCCGATTATTTTAGGTAAGACTTAT
GCATTTTCTTTTTCAATGAAGTGACAACTAAACACTAAAAACACAATTAT
TAGAATCATAAACCACTTAATCGTCACTAATTTGTGTCTTCGTGCGTGCG
TATGCCCAAAACTTGTCAACCATGCGTCACATTCACAAATTTGTCCGCTT
AACTTTGCTTTTCTCACTAATTTTCAGACGAGTGGGGTTAAACAAACACC
AATTTTACTTTCCACATATTACTTGTTAATTTTTTCATTCAATATTTGTC
ATTTTATTCAATCCGATGATCGAAAAAAAAATGTGTGAATAAAATCACTA
TTTTTAAAMAAATTTTGGCAAAATTTGAGAAACAGAAGACGGAAACCAAA
TATGGACCACAAAGTCCACACGTTGCAACCAAGTACGAAAGTGATCCGCA
TTTTTCAAGAGGAAGTAACCTCACAATTAGATGAAACTTGCATGCAACAA
TGCTTTATAGAAATATTTTATAGGGAATGACCTTTGCTTGTATGGAAGAG
GCAAAACAACATGGATTAAACATATATATTTTATTTACCGGAKAAAAGGA
AAAATCACCTATAAACCAACTCCAATTCAGCTAATCAAAGAAGAGAATAT
TGTAAATTATTGAATGGACTGAAATACGAAGGCATTGACGTGTCGATGTG
AGATAGAGCATTTACAAGGAAGTTTGTAAATTTGCGGTAATAAACGCGRC
GCTAGATAAGCAATTATCTCTACTAATTAATAAAACATTCATTATCAACT
AAAATTTTATAAAATTACYAGTTTAACTCTCTAATTAAAATAGAACATGA
ATAATAAATATGGGGCAGAAATATAATTTCACACAATCAAATTTTACYCT
TTTTTTTTTGTCAAAACCTCACATACATGTGATCTTAACATATCTCTAAT
TAAAATAAAAAAAATWAAAAAAAWAAAAACTTCCAACTCCCACATTCTCT
ATCACCCCCCTTYCTCTCTCCTTATATTTCAAAAACAAAAAATAAAAAAA
ATTTCTCACACACTTTTGTGTGTGCCCMTATGTTAGTAAAAATTATAAAT
AGRCACTTAAAAACGTAAGAAAAATATTTTCATGTTGTCAAAAAACTAAT
GAAAAACTTTAGTTGAAAAATCGAAGCTTTATGGATATTTTGGCAATATT
ATCTTTTACCAATTAAATTAAGAACAAGAACAACAACGCCACCTGATCAG
TTTTTTAGTTGTAACATGAATACAAGTGGTACACCATATGTTTTAATAGG
AATGATGAAAATTTTTATTTTTTAAATTATTAACTTTTTAGTACACATAT
CCCACCATTTGTACAGTGACACGTGATGTACCATCACGTGTACCAGTCAC
ACCGAAAAATATCTCTTAAAAACATCCTTCCGAATCCAGGGATTATACGG
GGTGGGACCCTGAGACGTAGGCAGATGATTAGATGTGGGGCCCTAAGAGT
ATTAGGGAAGCCGCATCCTTATTGGTTGCGGAGAAGTTCAGCCACCCAAA
TGACGACACGTCTATGTAACAACGGAGTCTTACCGTCCACCAAAACGTTT
GGACGGAAACAATGATGTTTCTCATCCGTCATCATGAAAAATACGGGACC
TACATGAATACTCAAAATCTCACCACTAATTTATACAAGCTATTTCCATT
TTAATTACAAAAAATTTATTCTTATTATATTTTTCATATCATATTTGTAC
YGTTTTTTATTACAATTAGAATCTACTTGAATTGATAGGCTCTATATTAA
YATGAGAGATTGTTTGATTAAGCAAGTGTTCGATTTGTAAAGCTCGTGTA
TCAGACCGCTTTGTGATCTTCATTTGCATATGAATCCATTATGAAAAATA
TAGATATATACTTTTATATATTCATAAAAATCAWAGAGGTATATGAGGCT
GCACCAGAAAATCTTTCAAGAACCAAAATGTTATTGTAGCAGTATGCTAA
ATTATTTATCTACGTTATATGAAAAAGTATAGACATATATATATATATAT
ATATATATATATATATATATATATATCAACATGTTATTCACATTAAATAA
CGTTACAATAACATTCTCGAGTAAGTTAGGCAATTAGCTTGAAATAACTA
TATGGATAAGTTTGTCCTCTCTCGCACTAACYAACCCTAACTGAACTTAG
CTAATGTACGCGCGCACACGGTTGATCTTTTTCCATGCTTCTGGGTTGCA
ATGCGAGGGGAGCAGGCTGCCGACCGCTGAGTCTTAGCGGGAAGAAGTGT
GCTCATTCCTAAAGCCCAACAGTAGGACCCACTAAAGCCTGTTTTGTTTT
GGTACACAAAGGAAGGGGCCACCGAGTGGAGATATTTTTTATTGTAATAG
AAAGGGGTATATCATGTATTTTTTATATAAATAGTRAAAAATTTTATATT
TTAAAATATTAACTTTTAAACAAACATATTACACTATTTATGTAGTAGCA
CTATCATATCGTATTTSGATCATAYTGAAATATCTCTTCACCGAGTGKAC
CACGCGAGCTCGGATCCGACAGACACAACTCAGAAAAATACACGATCCCT
CCGTCGTCCCTCCCTCAACTTGCGAGCTCAATGATAGTGGCTAGCCCACG
CCGGATTGCCAAGCCGTCSAGGCCATCATTCTCCTCCTGTATGGGTCCCA
CATCCCACCACACCTGCCGCCCTTTACTTTACTCATCCCAGTCCCTCCAA
AACCTTCCTCAACACTCTCGGTCCGTTCGGCTCCGCTCAGCTCGCTCCGC
CCAACTCCGCCCAGCACCTCAGGATAAAGAAGCCATTTGGAGGACTGTCA
CTTTCTTGATATTAAACGTCGGTTAATGGGTCCCACGTTTCTTCTGGAAA
AGCACTCGTGCAAAAACCCTAACTAACAACACCGTCAATACTAAAGAATA
TAGGACAACGTTAGTTAAGTAGAAAGTTGCCACCTGTGCTGCCCTTCCTT
TTTCGATGGAACGGGGAAGGAGAGGACGGTGTTAGAACGGGGCTCGAGCT
CCGTTACGGTCGACTCAGCTGACAAAGAACATGTAGGTAGATATTTTAAG
ACCGCGTATAATGATGACAATGGAAGCGTATAGGTCACGAGTTGATATCA
ATAGAATATGTAATAGGACTAGGGTTTGTAGAGAGAAGCGTATTGGAGTG
CTATAATTTCACCATTGGTTTCATCAACTTTTAGGTCTCACCCTTTAAGT
TGGAGTTTGTCTATGATATATCGGTATAGAGAGAGGCAMCAATATTTAAA
CAGTTAGATTAAGATTATCAAAATTCACATATATAATTCTAACCGTCACA
TTGTAAATTTTTTTTGACAAATCAGCAGCCAACAAGTATAAAATTTATCA
TGTCCTAGAAATAAGTAATCAGACACCTGAATTCGTTATTGTAATTTATA
TGTGATCAACAACACCATAATAATTAAGAACAATGCTAGAGAATTATTGT
GAAAACATAATGGTTAATTAGTTTTAATTGGTTTTGAGCCAGAACCATAT
CTACCGAACCAAATTAATACTTTCTTCAACAACACTTTGAATTAATCATC
CATGATTGTTACTTTGCCCCATTTATTTTGTACTTTAATTATGGAAGATA
TAATTAACACAGCTGAAAACAAACCTAATACTAAGAAAGATCAGTAAAAC
CCTAGAGCCAATTACTAGTTATAGCAATTCCACGTGTGGTAAACCCCAGA
AAAATGTGGTGGAACATGCAAGAAACCATGGATCACGATTCATATGGACA
CAGCAACAACACCATGATCATGATCGTAAATTTATTGGAGTTGAGAGTTA
AAAAAAAAGGGGGGATCGAGGGATGTAAGTAATTAATGGTAGGGACTAGA
AGGATGATGCCGCATTTGTTTRTAACTTTTTGGCTGGTGGCCGTTCCAAT
ACGTCATCATTATATCCCTAGCTCTCATATATCTTACTTGTTCTTGATCT
TTAAGTCCACATTTCTCTCTCTCTGACAATCTTTGTCACTGGCATAGAGA
CCAAGCTAGCTCAGATAAACAAACAATATTGAAATATATATATATATATA
TATATGGGTTGATTAAGGTTTCGGTCTCTATCACTATCAGTGGCGGGTAG
AGGTGGCAGTAGAGAAAGAGCTTTGCTTCCTGTTTGATCAGCCAGTTTTG
CGCCACCCTTTCTTCCCGCCTAATCTTTCCCCGCAATCTAGCCTTTATCG
ATAGTGAGAGACAAGACAATGAAAATCTAAGACATTAACCAGAAGCTGTA
ACTTTGTTTTTAGGGTTTTTTCTGCTTATTTAAACCTACTTGGTCTCTAT
TCTTCCATTCCTCAACTTTTCCATTTTCTTGGCTTGTCTTTCTTATTTTC
TCGGGATCCAAATAATCCAGAAAAGTCGACAATAAAGTTTTTGGGGACCA
GAAAACAAGTTCGTGTTCAATTCCCGAGGGCAGTACTGATATAAATCTTA
CAAATCACTGACATTTTCTGCTCGGCTGTCCTTGTTTCTTCCCTGATATC
TGTAACCTCCGTTCAGCTCCCTCTATAGTTTGAAGTCGTGAGGAAGATTG
ACACACAACCGATCAGATCCGTGGACTGCAAATCTAAAGATTTTTCTTTT
CTGTAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCA
TGAAATTCTACTTCTTTGTTCTCCAAGTATTCTTGAGTTGAATTCTTTGT
GGGTTAGCTTTTCAATATTATAATTTCGGTTATTTTCCGCTCGAACAAGA
GGGTTTGCTAGGGTAGAAACTTGTTCTTCATCAACCGTATCTCAAGAAAA
AAATAATAATATGGCTTTCCTTTTTTACATGATCTGGATTCTCATCGACC
TTCTGATCCAATTAACAAKAACAGTAAAGTACAATTTATTTGGAATGATC
AGTTTTGTTATTTTGATTTCTTTCATGTTTTCTTGCCTGCACCTAGATCG
ATTATCAAAAGTATTTATGATTACCATACAGAAAAAGTTTTTTCTCATCT
GAAGCATCATTTTCTGTATCAGATTAAATATTCTGTGTGAATTACATAGC
ATTGACAATGAACTCCCCAAAAAGAACCCYTTTTTTTTTCACGAGTTCAT
TCATCTAATTGAATATTCATGATTACATGACACTTTTCATTATCAACTTC
ACAATGGATCGATAAATTTCCCACATTAGCTAGGTCAAATGAACTTTTAG
TTAAGTAGSCAGTAGTTCAATAATTTCGAGCGGAAGCGTTAAACGACCTC
AATCATCACTCATCCGAGCTCATTTTGTTGAAAAAATCAGACAAAATCAG
TCACCATTGATTACTTACAAAGAAAATGTTGCATATGTTACATCGAGCTC
ATTCTGATAATCATCTATTTTTTTGGCATGCACACATGTCTTTGATTAGG
GCTAAAGTACACAAAAATTAACGAAAATTAAATTCCATTGAGATGATTCC
TTAGGGTTGTGTAAGGCAATTTACAGTTGGTTGAATATTGTTTCAGGATA
AAACTTTGCATGCATGCATGCCTATATGATCAGTATGACAAATAAATTTC
AGGACCGAAGACCAAAAGCTGGACAATATGGAAACTTTTTCACACGTTCC
CCCTGGTTTCCGGTTCCATCCGACGGATGAAGAACTTGTTGATTACTACC
TCAGGAAAAAGGTTACTTCAAGAAGGATTGACCTCGATGTTATTAAAGAT
GTCGACCTCTATAAAATTGAGCCATGGGATCTTCAAGGTATATAAACATT
ATCACAACCAAGATATTGGAGTAACTTCAATTTATTTAATCAATTGGACA
ACAACTAATATCAGTTACATAAACCTGTAAGTACAGAAATATGCAGAATA
GGGACAGAAGAGCAAAACGATTGGTACTTTTTCAGCCATAAAGATAAGAA
GTATCCTACTGGAACTCGAACAAACAGAGCCACAGCTGCAGGGTTTTGGA
AAGCCACAGGAAGAGACAAGGCCATTTATTCAAAGCATGACTTAATTGGC
ATGAGGAAGACCTTAGTGTTTTATAAGGGTCGAGCCCCAAATGGTCAGAA
GTCCGATTGGATTATGCATGAATACCGCCTTGAAACTGATGAAAATGGAA
CTCCGCAGGCAAGAATTKAAATTGCACATATTCTAAATTTTTAA

protein sequence of MDP0000320566

>MDP0000320566 ID=MDP0000320566; Name=MDP0000320566; organism=Malus x domestica; type=polypeptide; length=618bp
MTQDEKSLSIPKQLSNFKKLAVQVTLERALKAQSHNKWLGQKCRNKKERA
AWADCMSLYEETIKLLNQTIDPATKSTDYDTQTWLSTALTNLDTCRAGFV
ELEVSDFVFPLMSNNVSKLISNTLSLWNSSNVSPVTXMYTEGYPSWVSPG
DRKLLQSTPTADVVVAQDGSGNYKTIKAALDAAAARGGSKRFVIHVKRGV
YKENLEIKLKXIYLLGDGLRYTIITGSRSVVGGSTTFKSATVAVTGEGFI
ARGITFRNTAGPENHQAVALRSGADLSVFYRCGFEGYQDTLYTHSQRQFY
RECYVYGTVDFIFGNAAVVFQNCMIYARKPMSGQQNTITAQGRTDPNQNT
GISIHDSRVMAALDLESSVGSVKTFLGRPWKEYSRTVFMQSFLDTLVDPA
GWLQWSGDFALKTLYYGEYKNIGPGAPTTGRVKWGGYRIITSSSEASKFT
VDNFIAGSSWTEDQKLDNMETFSHVPPGFRFHPTDEELVDYYLRKKVTSR
RIDLDVIKDVDLYKIEPWDLQGTEEQNDWYFFSHKDKKYPTGTRTNRATA
AGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLET
DENGTPQARIXIAHILNF

mRNA from alignment at chr1:23895719..23904462-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000320566 ID=MDP0000320566; Name=MDP0000320566; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr1:23895719..23904462- (Malus x domestica

mRNA from alignment at MDC011829.158:4916..13659-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000320566 ID=MDP0000320566; Name=MDP0000320566; organism=Malus x domestica; type=mRNA; length=8744bp; location=Sequence derived from: MDC011829.158:4916..13659- (Malus x domestica
ATGACCCAAGACGAAAAATCTCTCTCTATCCCCAAACAACTATCCAACTT
CAAGAAACTTGCAGTCCAAGTAACATTAGAAAGAGCACTCAAAGCGCAAA
GTCACAACAAGTGGCTAGGGCAAAAGTGTAGAAACAAGAAAGAAAGAGCT
GCATGGGCTGACTGCATGAGCCTCTATGAGGAAACCATCAAACTCCTCAA
CCAAACCATAGACCCTGCCACAAAATCCACCGACTATGACACGCAAACTT
GGCTCAGCACTGCTCTCACGAACCTTGACACGTGTCGGGCTGGGTTCGTG
GAGCTTGAGGTTTCGGACTTTGTGTTTCCGCTCATGTCCAACAATGTGTC
CAAGCTGATAAGTAACACTTTGTCACTTTGGAATTCCTCAAATGTTTCAC
CGGTGACAAWTATGTACACAGAGGGTTATCCTAGTTGGGTTTCCCCTGGG
GATAGGAAACTGTTGCAGTCGACGCCCACAGCGGACGTAGTGGTCGCTCA
AGACGGGTCGGGGAACTATAAGACGATCAAAGCCGCTTTGGATGCTGCGG
CCGCAAGGGGTGGGAGTAAGAGGTTTGTGATACATGTGAAGAGAGGGGTT
TATAAGGAAAACCTTGAGATTAAGTTGAAGAMCATTTATCTGCTGGGTGA
TGGACTGAGGTATACTATTATCACCGGCAGCCGTAGTGTTGTTGGAGGTT
CTACAACTTTCAAGTCTGCAACTGTTGGTAAGTCATGACTCTCTGTCTCA
ATCACTAGTCTTCTCAAATGTCACAATGTATGTACCATTGAAATTGTCTC
AATAGAGCACAAAAGGTGTGGTAAATTGTTGACTTTTAATTGGTATAAGC
TTTTACTTTTTAAATTTATAACGGTTAATTTATGCATTACTCAATGATAT
GAACAAAAAAATAACAAAGTCAAAAACAAAATCYTCTACGAGCAGACATA
TAAACTTAGAACTTAACTACTACAAGATACATGTTCCCCTTGAACGACAT
ACATAGTTTATTTTAAAAGATTTGAACCCAAAAAGTAATACTAAAAATTC
ATATTTTCTAATTCTTGAWTTTTTTTGGGGGCCGGGTGTAATTACAGCGG
TAACTGGTGAAGGCTTCATTGCTCGTGGCATAACATTCCGCAACACAGCT
GGCCCAGAGAACCATCAAGCAGTAGCCCTCAGATCAGGCGCCGACCTCTC
AGTTTTCTACCGCTGCGGATTCGAAGGCTACCAAGATACCCTCTACACCC
ACTCCCAACGACAGTTCTACAGAGAATGCTATGTCTACGGCACCGTTGAT
TTTATCTTTGGCAACGCTGCGGTTGTTTTCCAAAACTGCATGATCTACGC
AAGAAAACCCATGAGTGGTCAACAGAACACAATCACAGCCCAAGGCCGAA
CGGACCCGAACCAGAACACGGGTATTTCTATCCACGACTCACGTGTCATG
GCCGCACTGGACCTTGAATCGTCCGTCGGCTCAGTCAAGACATTCTTGGG
TAGACCATGGAAGGAGTATTCACGCACAGTTTTTATGCAATCTTTTTTAG
ACACCCTGGTTGACCCAGCTGGGTGGCTCCAGTGGAGCGGTGATTTTGCT
TTGAAGACATTGTATTATGGAGAGTACAAGAACATTGGACCGGGTGCACC
TACTACTGGCAGGGTCAAGTGGGGTGGCTATCGAATTATAACTAGTTCAT
CGGAAGCATCGAAGTTTACTGTGGATAATTTCATTGCTGGAAGCTCATGG
TTGCCTGCTACAAATGKRCCWTTCACKGCTRRCCTTTGATCATACCATTG
CATGAACTGTGCCATTGTATAATTATGTCTCTAAGTTACTTATTYGACAA
TAAATTTTTTTTTAATTATTGTATCTAAAATTACTTAATGGAAATATAAA
AAAARAAAATCATTCTTGCTTAATGGAAATAAAAATAATAAAAATCATTC
TTGCAAAGTTAAAATGTGATTCTGAGTTTCTTTTATTTTTTCTTGGTTAC
ATAAGCAGCAAAAGCCCACCGCAACGAAGTAACAATCAAATGACACTGAG
TCGAGAAGGAGAAAATAAGAGTGATCAAATCAACACCCTTCACAATGAGA
AAAGACCTAAAATGTGGCAAAAACCTAAAAGTAACACCAATTTGGGTTTA
AGTTGGTGAGAAACTCAATCATTTGGATATTTAAGGGAGAGTGTAAGATR
CCCTAAAATCTGTAATAATCGAAACACAATTACGTAATATAYTATTCTAT
TCAGATTAAGATACTGAATTGTTTTTATTAGTAAACTCTAAAAATAAAAC
ATATCAATTATATCGTCTACGCTTACTATGACATGTGAAATAATACACAC
AAGATTTCTGTTTCTTCTTGCTTTTGCTTTGTGACGTGATGAAAATGTCA
TTTTGGATATGTAGTAAGCGACTATGACTATAGTCTTAATCATTTGAGCT
TTAACTATTCCTGCTTTAGTTGATCAGGTTTCATATTCACATAATCATGG
TAATAATAGTCATTACAATTTTCGAGGTGACATATAAACCAAAATGCAAT
CATATMTTCACATGTTTTGTACTTATCCGATTATTTTAGGTAAGACTTAT
GCATTTTCTTTTTCAATGAAGTGACAACTAAACACTAAAAACACAATTAT
TAGAATCATAAACCACTTAATCGTCACTAATTTGTGTCTTCGTGCGTGCG
TATGCCCAAAACTTGTCAACCATGCGTCACATTCACAAATTTGTCCGCTT
AACTTTGCTTTTCTCACTAATTTTCAGACGAGTGGGGTTAAACAAACACC
AATTTTACTTTCCACATATTACTTGTTAATTTTTTCATTCAATATTTGTC
ATTTTATTCAATCCGATGATCGAAAAAAAAATGTGTGAATAAAATCACTA
TTTTTAAAMAAATTTTGGCAAAATTTGAGAAACAGAAGACGGAAACCAAA
TATGGACCACAAAGTCCACACGTTGCAACCAAGTACGAAAGTGATCCGCA
TTTTTCAAGAGGAAGTAACCTCACAATTAGATGAAACTTGCATGCAACAA
TGCTTTATAGAAATATTTTATAGGGAATGACCTTTGCTTGTATGGAAGAG
GCAAAACAACATGGATTAAACATATATATTTTATTTACCGGAKAAAAGGA
AAAATCACCTATAAACCAACTCCAATTCAGCTAATCAAAGAAGAGAATAT
TGTAAATTATTGAATGGACTGAAATACGAAGGCATTGACGTGTCGATGTG
AGATAGAGCATTTACAAGGAAGTTTGTAAATTTGCGGTAATAAACGCGRC
GCTAGATAAGCAATTATCTCTACTAATTAATAAAACATTCATTATCAACT
AAAATTTTATAAAATTACYAGTTTAACTCTCTAATTAAAATAGAACATGA
ATAATAAATATGGGGCAGAAATATAATTTCACACAATCAAATTTTACYCT
TTTTTTTTTGTCAAAACCTCACATACATGTGATCTTAACATATCTCTAAT
TAAAATAAAAAAAATWAAAAAAAWAAAAACTTCCAACTCCCACATTCTCT
ATCACCCCCCTTYCTCTCTCCTTATATTTCAAAAACAAAAAATAAAAAAA
ATTTCTCACACACTTTTGTGTGTGCCCMTATGTTAGTAAAAATTATAAAT
AGRCACTTAAAAACGTAAGAAAAATATTTTCATGTTGTCAAAAAACTAAT
GAAAAACTTTAGTTGAAAAATCGAAGCTTTATGGATATTTTGGCAATATT
ATCTTTTACCAATTAAATTAAGAACAAGAACAACAACGCCACCTGATCAG
TTTTTTAGTTGTAACATGAATACAAGTGGTACACCATATGTTTTAATAGG
AATGATGAAAATTTTTATTTTTTAAATTATTAACTTTTTAGTACACATAT
CCCACCATTTGTACAGTGACACGTGATGTACCATCACGTGTACCAGTCAC
ACCGAAAAATATCTCTTAAAAACATCCTTCCGAATCCAGGGATTATACGG
GGTGGGACCCTGAGACGTAGGCAGATGATTAGATGTGGGGCCCTAAGAGT
ATTAGGGAAGCCGCATCCTTATTGGTTGCGGAGAAGTTCAGCCACCCAAA
TGACGACACGTCTATGTAACAACGGAGTCTTACCGTCCACCAAAACGTTT
GGACGGAAACAATGATGTTTCTCATCCGTCATCATGAAAAATACGGGACC
TACATGAATACTCAAAATCTCACCACTAATTTATACAAGCTATTTCCATT
TTAATTACAAAAAATTTATTCTTATTATATTTTTCATATCATATTTGTAC
YGTTTTTTATTACAATTAGAATCTACTTGAATTGATAGGCTCTATATTAA
YATGAGAGATTGTTTGATTAAGCAAGTGTTCGATTTGTAAAGCTCGTGTA
TCAGACCGCTTTGTGATCTTCATTTGCATATGAATCCATTATGAAAAATA
TAGATATATACTTTTATATATTCATAAAAATCAWAGAGGTATATGAGGCT
GCACCAGAAAATCTTTCAAGAACCAAAATGTTATTGTAGCAGTATGCTAA
ATTATTTATCTACGTTATATGAAAAAGTATAGACATATATATATATATAT
ATATATATATATATATATATATATATCAACATGTTATTCACATTAAATAA
CGTTACAATAACATTCTCGAGTAAGTTAGGCAATTAGCTTGAAATAACTA
TATGGATAAGTTTGTCCTCTCTCGCACTAACYAACCCTAACTGAACTTAG
CTAATGTACGCGCGCACACGGTTGATCTTTTTCCATGCTTCTGGGTTGCA
ATGCGAGGGGAGCAGGCTGCCGACCGCTGAGTCTTAGCGGGAAGAAGTGT
GCTCATTCCTAAAGCCCAACAGTAGGACCCACTAAAGCCTGTTTTGTTTT
GGTACACAAAGGAAGGGGCCACCGAGTGGAGATATTTTTTATTGTAATAG
AAAGGGGTATATCATGTATTTTTTATATAAATAGTRAAAAATTTTATATT
TTAAAATATTAACTTTTAAACAAACATATTACACTATTTATGTAGTAGCA
CTATCATATCGTATTTSGATCATAYTGAAATATCTCTTCACCGAGTGKAC
CACGCGAGCTCGGATCCGACAGACACAACTCAGAAAAATACACGATCCCT
CCGTCGTCCCTCCCTCAACTTGCGAGCTCAATGATAGTGGCTAGCCCACG
CCGGATTGCCAAGCCGTCSAGGCCATCATTCTCCTCCTGTATGGGTCCCA
CATCCCACCACACCTGCCGCCCTTTACTTTACTCATCCCAGTCCCTCCAA
AACCTTCCTCAACACTCTCGGTCCGTTCGGCTCCGCTCAGCTCGCTCCGC
CCAACTCCGCCCAGCACCTCAGGATAAAGAAGCCATTTGGAGGACTGTCA
CTTTCTTGATATTAAACGTCGGTTAATGGGTCCCACGTTTCTTCTGGAAA
AGCACTCGTGCAAAAACCCTAACTAACAACACCGTCAATACTAAAGAATA
TAGGACAACGTTAGTTAAGTAGAAAGTTGCCACCTGTGCTGCCCTTCCTT
TTTCGATGGAACGGGGAAGGAGAGGACGGTGTTAGAACGGGGCTCGAGCT
CCGTTACGGTCGACTCAGCTGACAAAGAACATGTAGGTAGATATTTTAAG
ACCGCGTATAATGATGACAATGGAAGCGTATAGGTCACGAGTTGATATCA
ATAGAATATGTAATAGGACTAGGGTTTGTAGAGAGAAGCGTATTGGAGTG
CTATAATTTCACCATTGGTTTCATCAACTTTTAGGTCTCACCCTTTAAGT
TGGAGTTTGTCTATGATATATCGGTATAGAGAGAGGCAMCAATATTTAAA
CAGTTAGATTAAGATTATCAAAATTCACATATATAATTCTAACCGTCACA
TTGTAAATTTTTTTTGACAAATCAGCAGCCAACAAGTATAAAATTTATCA
TGTCCTAGAAATAAGTAATCAGACACCTGAATTCGTTATTGTAATTTATA
TGTGATCAACAACACCATAATAATTAAGAACAATGCTAGAGAATTATTGT
GAAAACATAATGGTTAATTAGTTTTAATTGGTTTTGAGCCAGAACCATAT
CTACCGAACCAAATTAATACTTTCTTCAACAACACTTTGAATTAATCATC
CATGATTGTTACTTTGCCCCATTTATTTTGTACTTTAATTATGGAAGATA
TAATTAACACAGCTGAAAACAAACCTAATACTAAGAAAGATCAGTAAAAC
CCTAGAGCCAATTACTAGTTATAGCAATTCCACGTGTGGTAAACCCCAGA
AAAATGTGGTGGAACATGCAAGAAACCATGGATCACGATTCATATGGACA
CAGCAACAACACCATGATCATGATCGTAAATTTATTGGAGTTGAGAGTTA
AAAAAAAAGGGGGGATCGAGGGATGTAAGTAATTAATGGTAGGGACTAGA
AGGATGATGCCGCATTTGTTTRTAACTTTTTGGCTGGTGGCCGTTCCAAT
ACGTCATCATTATATCCCTAGCTCTCATATATCTTACTTGTTCTTGATCT
TTAAGTCCACATTTCTCTCTCTCTGACAATCTTTGTCACTGGCATAGAGA
CCAAGCTAGCTCAGATAAACAAACAATATTGAAATATATATATATATATA
TATATGGGTTGATTAAGGTTTCGGTCTCTATCACTATCAGTGGCGGGTAG
AGGTGGCAGTAGAGAAAGAGCTTTGCTTCCTGTTTGATCAGCCAGTTTTG
CGCCACCCTTTCTTCCCGCCTAATCTTTCCCCGCAATCTAGCCTTTATCG
ATAGTGAGAGACAAGACAATGAAAATCTAAGACATTAACCAGAAGCTGTA
ACTTTGTTTTTAGGGTTTTTTCTGCTTATTTAAACCTACTTGGTCTCTAT
TCTTCCATTCCTCAACTTTTCCATTTTCTTGGCTTGTCTTTCTTATTTTC
TCGGGATCCAAATAATCCAGAAAAGTCGACAATAAAGTTTTTGGGGACCA
GAAAACAAGTTCGTGTTCAATTCCCGAGGGCAGTACTGATATAAATCTTA
CAAATCACTGACATTTTCTGCTCGGCTGTCCTTGTTTCTTCCCTGATATC
TGTAACCTCCGTTCAGCTCCCTCTATAGTTTGAAGTCGTGAGGAAGATTG
ACACACAACCGATCAGATCCGTGGACTGCAAATCTAAAGATTTTTCTTTT
CTGTAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCA
TGAAATTCTACTTCTTTGTTCTCCAAGTATTCTTGAGTTGAATTCTTTGT
GGGTTAGCTTTTCAATATTATAATTTCGGTTATTTTCCGCTCGAACAAGA
GGGTTTGCTAGGGTAGAAACTTGTTCTTCATCAACCGTATCTCAAGAAAA
AAATAATAATATGGCTTTCCTTTTTTACATGATCTGGATTCTCATCGACC
TTCTGATCCAATTAACAAKAACAGTAAAGTACAATTTATTTGGAATGATC
AGTTTTGTTATTTTGATTTCTTTCATGTTTTCTTGCCTGCACCTAGATCG
ATTATCAAAAGTATTTATGATTACCATACAGAAAAAGTTTTTTCTCATCT
GAAGCATCATTTTCTGTATCAGATTAAATATTCTGTGTGAATTACATAGC
ATTGACAATGAACTCCCCAAAAAGAACCCYTTTTTTTTTCACGAGTTCAT
TCATCTAATTGAATATTCATGATTACATGACACTTTTCATTATCAACTTC
ACAATGGATCGATAAATTTCCCACATTAGCTAGGTCAAATGAACTTTTAG
TTAAGTAGSCAGTAGTTCAATAATTTCGAGCGGAAGCGTTAAACGACCTC
AATCATCACTCATCCGAGCTCATTTTGTTGAAAAAATCAGACAAAATCAG
TCACCATTGATTACTTACAAAGAAAATGTTGCATATGTTACATCGAGCTC
ATTCTGATAATCATCTATTTTTTTGGCATGCACACATGTCTTTGATTAGG
GCTAAAGTACACAAAAATTAACGAAAATTAAATTCCATTGAGATGATTCC
TTAGGGTTGTGTAAGGCAATTTACAGTTGGTTGAATATTGTTTCAGGATA
AAACTTTGCATGCATGCATGCCTATATGATCAGTATGACAAATAAATTTC
AGGACCGAAGACCAAAAGCTGGACAATATGGAAACTTTTTCACACGTTCC
CCCTGGTTTCCGGTTCCATCCGACGGATGAAGAACTTGTTGATTACTACC
TCAGGAAAAAGGTTACTTCAAGAAGGATTGACCTCGATGTTATTAAAGAT
GTCGACCTCTATAAAATTGAGCCATGGGATCTTCAAGGTATATAAACATT
ATCACAACCAAGATATTGGAGTAACTTCAATTTATTTAATCAATTGGACA
ACAACTAATATCAGTTACATAAACCTGTAAGTACAGAAATATGCAGAATA
GGGACAGAAGAGCAAAACGATTGGTACTTTTTCAGCCATAAAGATAAGAA
GTATCCTACTGGAACTCGAACAAACAGAGCCACAGCTGCAGGGTTTTGGA
AAGCCACAGGAAGAGACAAGGCCATTTATTCAAAGCATGACTTAATTGGC
ATGAGGAAGACCTTAGTGTTTTATAAGGGTCGAGCCCCAAATGGTCAGAA
GTCCGATTGGATTATGCATGAATACCGCCTTGAAACTGATGAAAATGGAA
CTCCGCAGGCAAGAATTKAAATTGCACATATTCTAAATTTTTAA

Coding sequence (CDS) from alignment at MDC011829.158:4916..13659-

>MDP0000320566 ID=MDP0000320566; Name=MDP0000320566; organism=Malus x domestica; type=CDS; length=1857bp; location=Sequence derived from: MDC011829.158:4916..13659- (Malus x domestica
ATGACCCAAGACGAAAAATCTCTCTCTATCCCCAAACAACTATCCAACTT
CAAGAAACTTGCAGTCCAAGTAACATTAGAAAGAGCACTCAAAGCGCAAA
GTCACAACAAGTGGCTAGGGCAAAAGTGTAGAAACAAGAAAGAAAGAGCT
GCATGGGCTGACTGCATGAGCCTCTATGAGGAAACCATCAAACTCCTCAA
CCAAACCATAGACCCTGCCACAAAATCCACCGACTATGACACGCAAACTT
GGCTCAGCACTGCTCTCACGAACCTTGACACGTGTCGGGCTGGGTTCGTG
GAGCTTGAGGTTTCGGACTTTGTGTTTCCGCTCATGTCCAACAATGTGTC
CAAGCTGATAAGTAACACTTTGTCACTTTGGAATTCCTCAAATGTTTCAC
CGGTGACAAWTATGTACACAGAGGGTTATCCTAGTTGGGTTTCCCCTGGG
GATAGGAAACTGTTGCAGTCGACGCCCACAGCGGACGTAGTGGTCGCTCA
AGACGGGTCGGGGAACTATAAGACGATCAAAGCCGCTTTGGATGCTGCGG
CCGCAAGGGGTGGGAGTAAGAGGTTTGTGATACATGTGAAGAGAGGGGTT
TATAAGGAAAACCTTGAGATTAAGTTGAAGAMCATTTATCTGCTGGGTGA
TGGACTGAGGTATACTATTATCACCGGCAGCCGTAGTGTTGTTGGAGGTT
CTACAACTTTCAAGTCTGCAACTGTTGCGGTAACTGGTGAAGGCTTCATT
GCTCGTGGCATAACATTCCGCAACACAGCTGGCCCAGAGAACCATCAAGC
AGTAGCCCTCAGATCAGGCGCCGACCTCTCAGTTTTCTACCGCTGCGGAT
TCGAAGGCTACCAAGATACCCTCTACACCCACTCCCAACGACAGTTCTAC
AGAGAATGCTATGTCTACGGCACCGTTGATTTTATCTTTGGCAACGCTGC
GGTTGTTTTCCAAAACTGCATGATCTACGCAAGAAAACCCATGAGTGGTC
AACAGAACACAATCACAGCCCAAGGCCGAACGGACCCGAACCAGAACACG
GGTATTTCTATCCACGACTCACGTGTCATGGCCGCACTGGACCTTGAATC
GTCCGTCGGCTCAGTCAAGACATTCTTGGGTAGACCATGGAAGGAGTATT
CACGCACAGTTTTTATGCAATCTTTTTTAGACACCCTGGTTGACCCAGCT
GGGTGGCTCCAGTGGAGCGGTGATTTTGCTTTGAAGACATTGTATTATGG
AGAGTACAAGAACATTGGACCGGGTGCACCTACTACTGGCAGGGTCAAGT
GGGGTGGCTATCGAATTATAACTAGTTCATCGGAAGCATCGAAGTTTACT
GTGGATAATTTCATTGCTGGAAGCTCATGGACCGAAGACCAAAAGCTGGA
CAATATGGAAACTTTTTCACACGTTCCCCCTGGTTTCCGGTTCCATCCGA
CGGATGAAGAACTTGTTGATTACTACCTCAGGAAAAAGGTTACTTCAAGA
AGGATTGACCTCGATGTTATTAAAGATGTCGACCTCTATAAAATTGAGCC
ATGGGATCTTCAAGGGACAGAAGAGCAAAACGATTGGTACTTTTTCAGCC
ATAAAGATAAGAAGTATCCTACTGGAACTCGAACAAACAGAGCCACAGCT
GCAGGGTTTTGGAAAGCCACAGGAAGAGACAAGGCCATTTATTCAAAGCA
TGACTTAATTGGCATGAGGAAGACCTTAGTGTTTTATAAGGGTCGAGCCC
CAAATGGTCAGAAGTCCGATTGGATTATGCATGAATACCGCCTTGAAACT
GATGAAAATGGAACTCCGCAGGCAAGAATTKAAATTGCACATATTCTAAA
TTTTTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000070	Pectinesterase_cat
IPR003441	NAC-dom
IPR006501	Pectinesterase_inhib_dom
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold
IPR018040	Pectinesterase_Tyr_AS

Vocabulary: **Cellular Component**
Term	Definition
GO:0005618	cell wall

Vocabulary: **Molecular Function**
Term	Definition
GO:0030599	pectinesterase activity
GO:0003677	DNA binding
GO:0004857	enzyme inhibitor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0042545	cell wall modification