MDP0000322119, MDP0000322119 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000322119
Unique Name	MDP0000322119
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	3296

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr16	chromosome	chr16:4844910..4848205 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC012565.276	contig	MDC012565.276:4793..8088 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.0	2012-04-02

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000322119_exon_1	MDP0000322119_exon_1	Malus x domestica	CDS
MDP0000322119_exon_2	MDP0000322119_exon_2	Malus x domestica	CDS
MDP0000322119_exon_3	MDP0000322119_exon_3	Malus x domestica	CDS
MDP0000322119_exon_4	MDP0000322119_exon_4	Malus x domestica	CDS
MDP0000322119_exon_5	MDP0000322119_exon_5	Malus x domestica	CDS
MDP0000322119_exon_6	MDP0000322119_exon_6	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000322119	MDP0000322119	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001087	Lipase, GDSL	PFAM	PF00657	Lipase_GDSL	coord: 48..378 score: 3.7
None	No IPR available	PANTHER	PTHR22835	FAMILY NOT NAMED	coord: 43..391 score: 1.5
None	No IPR available	PANTHER	PTHR22835:SF39	LATERAL SIGNALING TARGET PROTEIN 2	coord: 43..391 score: 1.5
None	No IPR available	SEG	seg	seg	coord: 15..26 score
None	No IPR available	SEG	seg	seg	coord: 50..60 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr16:4844910..4848205+
mRNA from alignment at MDC012565.276:4793..8088+
coding sequence from alignment at MDC012565.276:4793..8088+

mRNA sequence

>MDP0000322119 ID=MDP0000322119; Name=MDP0000322119; organism=Malus x domestica; type=mRNA; length=3296bp
ATGCCAGAGCGCTTCCAGCAAAAATTGACAAAAGTGAGTTATAGGGAAAC
TAAACAAATACAAATCGACAAATTYGGCTCCAAAAGCCAAAAGCCGATTT
CAGCGAGATAAGTGATTGTCTTCTCTTTCTCTTCTTCTTTGTTTCCTCAG
ACAGACAGTATGAAATCACAGTTCTCAAAACTACTAGTTGCAACTGCTAT
GTTAATGTTTCTATCAGTGAGCTTGGCAGCCTCATCGTCTCCATGCAAAT
TTCCAGCCATATTCAACTTCGGCGACTCAAACTCYGACACAGGCGGCTTG
TCTGCGCTCTTCGGCCAGGCGCGTTTGCCYCACGGAGAGTCCTACTTCCA
TAGCCCCGCCGGCCGTTACTGCGATGGCCGTCTTGTCATTGATTTTATAG
GTACTTTACTACATTTTTCATCTTCTTCCAGTGTTCTAAAACGTCCCGCT
TAAACATGTCTAGACACTTGCCTCAACCTCCTAAATTACGAGTTACACTT
TGATAGAAACTAAATAACTTTTTTTGTGTGTTATTCTTTTTAATAAAATG
TAAAAGACTTATTGGATAACAATATGAACACTCATAATTATATGCTTATC
CTAGTGTTTTTAATATATTCTTATTCTAGTGTTTTTAATATATTCTAGTA
TTTAATAATTTAAACGTCATTCTGTCTTACAATTAATGTATCCGATACAA
TTATATATTTTTAAGTATAACTATACATTTATTTATATATTATATAATAA
ATTTGGTTGAATTAAAAAACCGCTTAAACCTTTGCCTAAATGCCTAGGTG
CTAAATTTATACCCACAACCAAACTAGCGTCTTTATAACTTTGTTCTTAC
TCTCAATTTTTTTTAGGGAACTTTAACGAAAAGCACCCGGTACTGTTCAC
TTTAACGAAAAACCACATTTTTACACTAAAAAGTCAATCCTGGTACTATT
CACTTTACCCTTTATTTTGTTCTTATTATTAAAACTCAAAGTTTTCAAGG
CCTTTTCATTAGTTTCCTTTTTTTTTACCATGATGATCGATTCAACTATT
CAATTTTTTTTTTGGTAAACACTATTCATTTCTTTTTTTGGTCGTGCAAT
TATTCATAGAAAAACTAATGAAAATAGTTTGAAAACTTTGAATTTTAACG
ATAAAGACAAAATAAAGGGTAAAATGAATAGTATCATGATTGACTTTTTA
ATGTAAACATATAATTTTTCATTAAAATAAATAGTACCGAAAACTTTTCA
TTAAAGTTCTTATTATTCATTTCATGTACTTGTTTGTCGATCGTTTGAAT
AGAAGTATTCCACCGACGCTCAGGTTGATTGTAGAGTGAAATAAAATATT
ATGTCCCAACTCAGGAACTTAATAGCGGTACGTTTATGTGACTTGCAGCA
AAAGTAGCGCTTACTTTAGTGTTACCTTTTTAATGTTAAAATATGTTTAA
AGTTCGAACAAAGTTGTTAGGGTTTTGTAATTTCAATCCAATTATTCTTT
GATAACGTGATGTGCGGGGGGGTTTTTGAGTGTAACACTGTAACCGTCAT
TTTTTCTTTGGGAGAGGGTGGGTAATTCGAACATAAATTATTGATGAAAA
ACTATTTTTGCCTAACCTTCTAAAAAAAAGTGTGACGTGTAAATATGGGT
AAGATAATTGAGTCAGTGTGGGAAGCTACCAAAAACGCCAACCTGCCTCT
GTTTTAACTTACATGAAATCACATGGTTTTATACAGGAAAAGAATCTAAC
CAAATCAGATTATCTGACAATTAGTAATTGGACTGAATCTGTAATATTAG
TACTACGGGCCTAGTTTAGCGGTACTTGGTCGACTCACATGAACGACGTT
GACGTTTATAGTTGTTTTGAGTTTGATGTTTGATTAAAATTTTGATCATA
TTGTATGGTTGAGCTTAAATTCATCGGTTTAAAGTAGAATATAATTGTAT
AATAAAAATATAATATTTTGATTGAATGCTCTGTTTGCAGCTAACAGCCT
CGAATTACCGTATATGAGCGCATATTTTGATTCTGTGGGAAGCAACTTCA
CTCACGGAGCCAACTTTGCCACGGCGGGCTCAACCATCAGGCCGCAAAAC
ACAACCATTCGCCAGAGCGGGTTTAGTCCCGTATCCTTGGACGTTCAGTA
CAATGAGTTTTACGATTTTCAACCAAGATCCCAAACTGCTCGTAGTCGAG
GTCACAATTTGACATGTGTACATATACTTTTCTTTCTGTATTTTAACGAG
TTGCATTTGTGCGTTTAGCATATGTGGCAAACTATGATTTGCACGTAAGG
AAACCGAGCAGTGTCCTTACGCACATCTACACAGTTTATTCGGTGAGAAA
ACTTGTATCAATGTAGGCTAAACCAGAAGATCAGTTGCAATGCAGGTGGA
GTTTTTGAACAGCTAATGCCTAAAGCAGAAGATTTCTCTCGTGCTTTATA
CACATTTGATATTGGCCAGAATGATTTAACATCCGGTTTGTTCTTGAACA
TGTCCATTACCCAAGTCAAGGCATATGTTCCTGATGTGCTAAACCAGTTT
AACAGCATTGTTCAGGTAATTAGCAATTCAAACTGTGCCTAAGTTTGGAT
TTAATTAGTCATTAATTTGGTTGTGATGTGCTTTGTATGTGTACTCACGC
AGTCTGTATACAATCAAGGAGGTAGATACTTTTGGATACACAATACAGGC
CCCATTGGTTGTCTTCCCTACGTATTGGACCGCTTACCAATCCCAGCCGC
GCAGCTTGACAAGGCCGGATGCGCCACGCCTTACAATAAACTTGCTCGGT
TTTTCAACCGGGGATTGAAACAAGCTGTGGTTCAGTTAAGAAAAGAACTA
CCATTGGCTGCAATCACTTATGTTGATGTTTATTCAGCCAAGTACTCCCT
CATTAGCCAACCACAAAAGCATGGTGAGCCCTTCGTAGATTGAATCCACT
TTTGTCAAGTTTATGATGTGGTGTTTTGTATTCTTCGACGGTTTGCTGAC
ATGTAATACAAAATGTCGCAGGATTCAAGCAACCGATAAGAGCATGTTGT
GGTCATGGTGGGAAGTACAACTTCAACAAGCACATTGGATGTGGAGGAAA
GATTAGGGTTCATGGAAAAGATGTGTTAGTGGGAAAGGCATGCCAAGACC
CATCACTTTGGGTGAATTGGGATGGTGTGCATTTCACTGAGGCKGCTAAC
AAGAGAGTCTTCGATCAGATTGTAGATGGTTCACTCTCAGACCCACCAAC
TCCATTGAAATTTGCTTGCCATGGAAAGCAGCAGCAAMCTCATTAG

protein sequence of MDP0000322119

>MDP0000322119 ID=MDP0000322119; Name=MDP0000322119; organism=Malus x domestica; type=polypeptide; length=402bp
MPERFQQKLTKTDSMKSQFSKLLVATAMLMFLSVSLAASSSPCKFPAIFN
FGDSNSDTGGLSALFGQARLPHGESYFHSPAGRYCDGRLVIDFIANSLEL
PYMSAYFDSVGSNFTHGANFATAGSTIRPQNTTIRQSGFSPVSLDVQYNE
FYDFQPRSQTARSRGGVFEQLMPKAEDFSRALYTFDIGQNDLTSGLFLNM
SITQVKAYVPDVLNQFNSIVQSVYNQGGRYFWIHNTGPIGCLPYVLDRLP
IPAAQLDKAGCATPYNKLARFFNRGLKQAVVQLRKELPLAAITYVDVYSA
KYSLISQPQKHGFKQPIRACCGHGGKYNFNKHIGCGGKIRVHGKDVLVGK
ACQDPSLWVNWDGVHFTEAANKRVFDQIVDGSLSDPPTPLKFACHGKQQQ
XH

mRNA from alignment at chr16:4844910..4848205+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000322119 ID=MDP0000322119; Name=MDP0000322119; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr16:4844910..4848205+ (Malus x domestica

mRNA from alignment at MDC012565.276:4793..8088+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000322119 ID=MDP0000322119; Name=MDP0000322119; organism=Malus x domestica; type=mRNA; length=3296bp; location=Sequence derived from: MDC012565.276:4793..8088+ (Malus x domestica
ATGCCAGAGCGCTTCCAGCAAAAATTGACAAAAGTGAGTTATAGGGAAAC
TAAACAAATACAAATCGACAAATTYGGCTCCAAAAGCCAAAAGCCGATTT
CAGCGAGATAAGTGATTGTCTTCTCTTTCTCTTCTTCTTTGTTTCCTCAG
ACAGACAGTATGAAATCACAGTTCTCAAAACTACTAGTTGCAACTGCTAT
GTTAATGTTTCTATCAGTGAGCTTGGCAGCCTCATCGTCTCCATGCAAAT
TTCCAGCCATATTCAACTTCGGCGACTCAAACTCYGACACAGGCGGCTTG
TCTGCGCTCTTCGGCCAGGCGCGTTTGCCYCACGGAGAGTCCTACTTCCA
TAGCCCCGCCGGCCGTTACTGCGATGGCCGTCTTGTCATTGATTTTATAG
GTACTTTACTACATTTTTCATCTTCTTCCAGTGTTCTAAAACGTCCCGCT
TAAACATGTCTAGACACTTGCCTCAACCTCCTAAATTACGAGTTACACTT
TGATAGAAACTAAATAACTTTTTTTGTGTGTTATTCTTTTTAATAAAATG
TAAAAGACTTATTGGATAACAATATGAACACTCATAATTATATGCTTATC
CTAGTGTTTTTAATATATTCTTATTCTAGTGTTTTTAATATATTCTAGTA
TTTAATAATTTAAACGTCATTCTGTCTTACAATTAATGTATCCGATACAA
TTATATATTTTTAAGTATAACTATACATTTATTTATATATTATATAATAA
ATTTGGTTGAATTAAAAAACCGCTTAAACCTTTGCCTAAATGCCTAGGTG
CTAAATTTATACCCACAACCAAACTAGCGTCTTTATAACTTTGTTCTTAC
TCTCAATTTTTTTTAGGGAACTTTAACGAAAAGCACCCGGTACTGTTCAC
TTTAACGAAAAACCACATTTTTACACTAAAAAGTCAATCCTGGTACTATT
CACTTTACCCTTTATTTTGTTCTTATTATTAAAACTCAAAGTTTTCAAGG
CCTTTTCATTAGTTTCCTTTTTTTTTACCATGATGATCGATTCAACTATT
CAATTTTTTTTTTGGTAAACACTATTCATTTCTTTTTTTGGTCGTGCAAT
TATTCATAGAAAAACTAATGAAAATAGTTTGAAAACTTTGAATTTTAACG
ATAAAGACAAAATAAAGGGTAAAATGAATAGTATCATGATTGACTTTTTA
ATGTAAACATATAATTTTTCATTAAAATAAATAGTACCGAAAACTTTTCA
TTAAAGTTCTTATTATTCATTTCATGTACTTGTTTGTCGATCGTTTGAAT
AGAAGTATTCCACCGACGCTCAGGTTGATTGTAGAGTGAAATAAAATATT
ATGTCCCAACTCAGGAACTTAATAGCGGTACGTTTATGTGACTTGCAGCA
AAAGTAGCGCTTACTTTAGTGTTACCTTTTTAATGTTAAAATATGTTTAA
AGTTCGAACAAAGTTGTTAGGGTTTTGTAATTTCAATCCAATTATTCTTT
GATAACGTGATGTGCGGGGGGGTTTTTGAGTGTAACACTGTAACCGTCAT
TTTTTCTTTGGGAGAGGGTGGGTAATTCGAACATAAATTATTGATGAAAA
ACTATTTTTGCCTAACCTTCTAAAAAAAAGTGTGACGTGTAAATATGGGT
AAGATAATTGAGTCAGTGTGGGAAGCTACCAAAAACGCCAACCTGCCTCT
GTTTTAACTTACATGAAATCACATGGTTTTATACAGGAAAAGAATCTAAC
CAAATCAGATTATCTGACAATTAGTAATTGGACTGAATCTGTAATATTAG
TACTACGGGCCTAGTTTAGCGGTACTTGGTCGACTCACATGAACGACGTT
GACGTTTATAGTTGTTTTGAGTTTGATGTTTGATTAAAATTTTGATCATA
TTGTATGGTTGAGCTTAAATTCATCGGTTTAAAGTAGAATATAATTGTAT
AATAAAAATATAATATTTTGATTGAATGCTCTGTTTGCAGCTAACAGCCT
CGAATTACCGTATATGAGCGCATATTTTGATTCTGTGGGAAGCAACTTCA
CTCACGGAGCCAACTTTGCCACGGCGGGCTCAACCATCAGGCCGCAAAAC
ACAACCATTCGCCAGAGCGGGTTTAGTCCCGTATCCTTGGACGTTCAGTA
CAATGAGTTTTACGATTTTCAACCAAGATCCCAAACTGCTCGTAGTCGAG
GTCACAATTTGACATGTGTACATATACTTTTCTTTCTGTATTTTAACGAG
TTGCATTTGTGCGTTTAGCATATGTGGCAAACTATGATTTGCACGTAAGG
AAACCGAGCAGTGTCCTTACGCACATCTACACAGTTTATTCGGTGAGAAA
ACTTGTATCAATGTAGGCTAAACCAGAAGATCAGTTGCAATGCAGGTGGA
GTTTTTGAACAGCTAATGCCTAAAGCAGAAGATTTCTCTCGTGCTTTATA
CACATTTGATATTGGCCAGAATGATTTAACATCCGGTTTGTTCTTGAACA
TGTCCATTACCCAAGTCAAGGCATATGTTCCTGATGTGCTAAACCAGTTT
AACAGCATTGTTCAGGTAATTAGCAATTCAAACTGTGCCTAAGTTTGGAT
TTAATTAGTCATTAATTTGGTTGTGATGTGCTTTGTATGTGTACTCACGC
AGTCTGTATACAATCAAGGAGGTAGATACTTTTGGATACACAATACAGGC
CCCATTGGTTGTCTTCCCTACGTATTGGACCGCTTACCAATCCCAGCCGC
GCAGCTTGACAAGGCCGGATGCGCCACGCCTTACAATAAACTTGCTCGGT
TTTTCAACCGGGGATTGAAACAAGCTGTGGTTCAGTTAAGAAAAGAACTA
CCATTGGCTGCAATCACTTATGTTGATGTTTATTCAGCCAAGTACTCCCT
CATTAGCCAACCACAAAAGCATGGTGAGCCCTTCGTAGATTGAATCCACT
TTTGTCAAGTTTATGATGTGGTGTTTTGTATTCTTCGACGGTTTGCTGAC
ATGTAATACAAAATGTCGCAGGATTCAAGCAACCGATAAGAGCATGTTGT
GGTCATGGTGGGAAGTACAACTTCAACAAGCACATTGGATGTGGAGGAAA
GATTAGGGTTCATGGAAAAGATGTGTTAGTGGGAAAGGCATGCCAAGACC
CATCACTTTGGGTGAATTGGGATGGTGTGCATTTCACTGAGGCKGCTAAC
AAGAGAGTCTTCGATCAGATTGTAGATGGTTCACTCTCAGACCCACCAAC
TCCATTGAAATTTGCTTGCCATGGAAAGCAGCAGCAAMCTCATTAG

Coding sequence (CDS) from alignment at MDC012565.276:4793..8088+

>MDP0000322119 ID=MDP0000322119; Name=MDP0000322119; organism=Malus x domestica; type=CDS; length=1209bp; location=Sequence derived from: MDC012565.276:4793..8088+ (Malus x domestica
ATGCCAGAGCGCTTCCAGCAAAAATTGACAAAAACAGACAGTATGAAATC
ACAGTTCTCAAAACTACTAGTTGCAACTGCTATGTTAATGTTTCTATCAG
TGAGCTTGGCAGCCTCATCGTCTCCATGCAAATTTCCAGCCATATTCAAC
TTCGGCGACTCAAACTCYGACACAGGCGGCTTGTCTGCGCTCTTCGGCCA
GGCGCGTTTGCCYCACGGAGAGTCCTACTTCCATAGCCCCGCCGGCCGTT
ACTGCGATGGCCGTCTTGTCATTGATTTTATAGCTAACAGCCTCGAATTA
CCGTATATGAGCGCATATTTTGATTCTGTGGGAAGCAACTTCACTCACGG
AGCCAACTTTGCCACGGCGGGCTCAACCATCAGGCCGCAAAACACAACCA
TTCGCCAGAGCGGGTTTAGTCCCGTATCCTTGGACGTTCAGTACAATGAG
TTTTACGATTTTCAACCAAGATCCCAAACTGCTCGTAGTCGAGGTGGAGT
TTTTGAACAGCTAATGCCTAAAGCAGAAGATTTCTCTCGTGCTTTATACA
CATTTGATATTGGCCAGAATGATTTAACATCCGGTTTGTTCTTGAACATG
TCCATTACCCAAGTCAAGGCATATGTTCCTGATGTGCTAAACCAGTTTAA
CAGCATTGTTCAGTCTGTATACAATCAAGGAGGTAGATACTTTTGGATAC
ACAATACAGGCCCCATTGGTTGTCTTCCCTACGTATTGGACCGCTTACCA
ATCCCAGCCGCGCAGCTTGACAAGGCCGGATGCGCCACGCCTTACAATAA
ACTTGCTCGGTTTTTCAACCGGGGATTGAAACAAGCTGTGGTTCAGTTAA
GAAAAGAACTACCATTGGCTGCAATCACTTATGTTGATGTTTATTCAGCC
AAGTACTCCCTCATTAGCCAACCACAAAAGCATGGATTCAAGCAACCGAT
AAGAGCATGTTGTGGTCATGGTGGGAAGTACAACTTCAACAAGCACATTG
GATGTGGAGGAAAGATTAGGGTTCATGGAAAAGATGTGTTAGTGGGAAAG
GCATGCCAAGACCCATCACTTTGGGTGAATTGGGATGGTGTGCATTTCAC
TGAGGCKGCTAACAAGAGAGTCTTCGATCAGATTGTAGATGGTTCACTCT
CAGACCCACCAACTCCATTGAAATTTGCTTGCCATGGAAAGCAGCAGCAA
MCTCATTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001087	GDSL

Vocabulary: **Biological Process**
Term	Definition
GO:0006629	lipid metabolic process