MDP0000389664, MDP0000389664 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000389664
Unique NameMDP0000389664
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1946
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000389664_exon_1MDP0000389664_exon_1Malus x domesticaCDS
MDP0000389664_exon_2MDP0000389664_exon_2Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000389664MDP0000389664Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 256..551
score: 3.1e
IPR006501Pectinesterase inhibitorGENE3D1.20.140.40no descriptioncoord: 48..203
score: 1.2
IPR006501Pectinesterase inhibitorPFAMPF04043PMEIcoord: 48..199
score: 1.8
IPR006501Pectinesterase inhibitorSMARTSM00856Plant invertase/pectin methylesterase inhibicoord: 47..199
score: 1.7
IPR006501Pectinesterase inhibitorTIGRFAMsTIGR01614PME_inhib: pectinesterase inhibitor domaincoord: 18..201
score: 1.7
IPR006501Pectinesterase inhibitorSUPERFAMILY101148Plant invertase/pectin methylesterase inhibitorcoord: 49..206
score: 1.9
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 249..566
score: 5e
IPR012334Pectin lyase foldGENE3D2.160.20.10no descriptioncoord: 253..565
score: 4.4e
IPR018040Pectinesterase, active sitePROSITEPS00503PECTINESTERASE_2coord: 400..409
score
NoneNo IPR availablePANTHERPTHR22931FAMILY NOT NAMEDcoord: 47..503
score: 1.3
NoneNo IPR availablePANTHERPTHR22931:SF5METHYLESTERASE INHIBITOR-RELATEDcoord: 47..503
score: 1.3
NoneNo IPR availableSEGsegsegcoord: 7..28
score: NAcoord: 30..51
score
NoneNo IPR availableSEGsegsegcoord: 28..53
score
NoneNo IPR availableSEGsegsegcoord: 13..35
score
NoneNo IPR availableSEGsegsegcoord: 87..100
score
NoneNo IPR availableSEGsegsegcoord: 150..169
score: NAcoord: 192..200
score
NoneNo IPR availableSEGsegsegcoord: 68..79
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000389664 ID=MDP0000389664; Name=MDP0000389664; organism=Malus x domestica; type=mRNA; length=1946bp
ATGGCAGCTAGTGAATCAAAGAAGAAGAAGATAGCCATCATCGCCGTATT
GGTTGTACTTCTGGTGGCGATGATAGTGGCGGTGACGGTGGGTGTCAAAA
TGGCCAAAAAGGGCAACAAGAAGCCTGCCAAGGTTGGTGCGAAGAAAAAG
GCCATCGAGACCATATGCCAGGCCACCACCTACAAAGAAACCTGCCAAAG
CAGCCTCGAAAAGGAGACGGGTGACACCACCGACCCGAAGGACCTGATCA
AGGCCGAGTTCCAGGTGGCGGCGGACAAAGTTAATGAGGTGATCAAGAAC
TCGAACACCTTGAAAGAGTATGCCAAGGATCCAATGGCCAGCCAGGCTCT
GGGCGTGTGCAAGGAATTGTTGGAAACCGCAGTTGAAGATCTCCTCGGGG
CRGTTGATAAGATGGGGCCATTCGATGTTAGCAAGATCAGTGACTACCTT
GCAGATCTCAAGGTGTGGCTGAGCGCCGCCGTCAATCACCAGGCAACCTG
CCTTGACGCGTTTGAGGACACCAAAGGCGARGCCGGCGAGAAAATGAGGG
GCTTTTTGAAGACAGCGCAAGAACTCACCAGCAATGGACTTGCCATGGTC
TCGGAAATCTCTCGTCTCGTCGATTCTCCTAAATTGAACTCTCACCGTCG
CCTCATGTCCTCGTCAAAAGGCGGGCAGACAAAGAGGAATTATAAGCCAG
TGCCAGGGTGGATGAGTGATCGCCATCTGGATCTCTTGACTGCCACTCCG
GAGAGCTTGAAGCCCAACGTGGTTGTGGCTAAGGATGGGACTGGCAAGTA
TAAGACCATCAACGAGGCCTTGAAGGAGGTCCCACARAAGAGCAACGAGG
CCTTTGTGATTTATATTAAGAAGGGAATGTACGAAGAGACTGTCATCGTT
GACAAGGAAATGACCAATGTTGTGATGATTGGTGACGGTCCAACCATGAC
CAGGATCAGCGGAAGCAAGAGCCACGCGGATGGTATCACAACCATGAACA
CTGCAACCTTTGGTACGTAACACTTAACCTATTCATTCACCAAATTATTA
ACGGATGTTACACTGCAAAAAAATCTGACAATAGCCATTAACACGTCACA
GAGGTGGGATAAAATTACGAACATATTAGTAACCCAAGTGGTCAGTTTAT
ATTGGTTACTTCGGACTCGATGGGGTTGAATTACGATTAACTGTGCATTC
TAACTCTACCTCATTTTCTCACCCTCCGTCTACACTTCGTTCCTGCAGCC
GCAGTTGGAAACTATTTCGTTGCCAAGGGAATTGGGTTCGAGAACACAGC
AGGACACGTAAAGCACCAAGCCGTGGCACTGCGTGTGCAATCCGACTTCT
CCATCTTCTTCAACTGCCACATGGATGCATACCAAGACACACTCTACACC
CAAACCTACCGCCAATTCTACCGCGACTGCACCATCACTGGTACAGTAGA
CTTCATCTTTGGCGATGGGGTGGCTTTGTTCCAAAACTGCAAGATGGTGG
TGAGAAAGCCAGGGGAAGCACAGGCTTGCATGGTGACAGCACAAGGCAGG
ACTGACCGCAACGAGATCACCGGCATTTTCCTCCAAAACTGCACCATCAC
CGGTGAGCCAGATTACATGGCTGTGAAGGATAAGAACAAGGCATACTTGG
GGAGGCCATGGAAGAAATTTGCAAGGGTAGTTGTGATGCAGTCATCGATT
GACGAAGCCATTGCACCTGAAGGGTGGACAGAATGGACTGGTGAAAAATA
CCACCAAAACTGCTTCTTTGGTGAGTACGGAAACAGGGGTCCTAGGAAGG
ACATGACCCAAAGGGTCAAATGGTCAACCGTCAAGAGACTCACTCCTGAT
CAAGCTGCGGCTTTCACCCCTGCTAGGGTGTTTGAGGGTGATAAGTGGGT
AAAGCCCAGTGGGGTTCCATATGTTCCAGGCATGATGCCCGTGTAA
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protein sequence of MDP0000389664

>MDP0000389664 ID=MDP0000389664; Name=MDP0000389664; organism=Malus x domestica; type=polypeptide; length=570bp
MAASESKKKKIAIIAVLVVLLVAMIVAVTVGVKMAKKGNKKPAKVGAKKK
AIETICQATTYKETCQSSLEKETGDTTDPKDLIKAEFQVAADKVNEVIKN
SNTLKEYAKDPMASQALGVCKELLETAVEDLLGAVDKMGPFDVSKISDYL
ADLKVWLSAAVNHQATCLDAFEDTKGEAGEKMRGFLKTAQELTSNGLAMV
SEISRLVDSPKLNSHRRLMSSSKGGQTKRNYKPVPGWMSDRHLDLLTATP
ESLKPNVVVAKDGTGKYKTINEALKEVPQKSNEAFVIYIKKGMYEETVIV
DKEMTNVVMIGDGPTMTRISGSKSHADGITTMNTATFAAVGNYFVAKGIG
FENTAGHVKHQAVALRVQSDFSIFFNCHMDAYQDTLYTQTYRQFYRDCTI
TGTVDFIFGDGVALFQNCKMVVRKPGEAQACMVTAQGRTDRNEITGIFLQ
NCTITGEPDYMAVKDKNKAYLGRPWKKFARVVVMQSSIDEAIAPEGWTEW
TGEKYHQNCFFGEYGNRGPRKDMTQRVKWSTVKRLTPDQAAAFTPARVFE
GDKWVKPSGVPYVPGMMPV*
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mRNA from alignment at chr13:14855945..14857890-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000389664 ID=MDP0000389664; Name=MDP0000389664; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:14855945..14857890- (Malus x domestica
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mRNA from alignment at MDC018471.91:24898..26843-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000389664 ID=MDP0000389664; Name=MDP0000389664; organism=Malus x domestica; type=mRNA; length=1946bp; location=Sequence derived from: MDC018471.91:24898..26843- (Malus x domestica
ATGGCAGCTAGTGAATCAAAGAAGAAGAAGATAGCCATCATCGCCGTATT
GGTTGTACTTCTGGTGGCGATGATAGTGGCGGTGACGGTGGGTGTCAAAA
TGGCCAAAAAGGGCAACAAGAAGCCTGCCAAGGTTGGTGCGAAGAAAAAG
GCCATCGAGACCATATGCCAGGCCACCACCTACAAAGAAACCTGCCAAAG
CAGCCTCGAAAAGGAGACGGGTGACACCACCGACCCGAAGGACCTGATCA
AGGCCGAGTTCCAGGTGGCGGCGGACAAAGTTAATGAGGTGATCAAGAAC
TCGAACACCTTGAAAGAGTATGCCAAGGATCCAATGGCCAGCCAGGCTCT
GGGCGTGTGCAAGGAATTGTTGGAAACCGCAGTTGAAGATCTCCTCGGGG
CRGTTGATAAGATGGGGCCATTCGATGTTAGCAAGATCAGTGACTACCTT
GCAGATCTCAAGGTGTGGCTGAGCGCCGCCGTCAATCACCAGGCAACCTG
CCTTGACGCGTTTGAGGACACCAAAGGCGARGCCGGCGAGAAAATGAGGG
GCTTTTTGAAGACAGCGCAAGAACTCACCAGCAATGGACTTGCCATGGTC
TCGGAAATCTCTCGTCTCGTCGATTCTCCTAAATTGAACTCTCACCGTCG
CCTCATGTCCTCGTCAAAAGGCGGGCAGACAAAGAGGAATTATAAGCCAG
TGCCAGGGTGGATGAGTGATCGCCATCTGGATCTCTTGACTGCCACTCCG
GAGAGCTTGAAGCCCAACGTGGTTGTGGCTAAGGATGGGACTGGCAAGTA
TAAGACCATCAACGAGGCCTTGAAGGAGGTCCCACARAAGAGCAACGAGG
CCTTTGTGATTTATATTAAGAAGGGAATGTACGAAGAGACTGTCATCGTT
GACAAGGAAATGACCAATGTTGTGATGATTGGTGACGGTCCAACCATGAC
CAGGATCAGCGGAAGCAAGAGCCACGCGGATGGTATCACAACCATGAACA
CTGCAACCTTTGGTACGTAACACTTAACCTATTCATTCACCAAATTATTA
ACGGATGTTACACTGCAAAAAAATCTGACAATAGCCATTAACACGTCACA
GAGGTGGGATAAAATTACGAACATATTAGTAACCCAAGTGGTCAGTTTAT
ATTGGTTACTTCGGACTCGATGGGGTTGAATTACGATTAACTGTGCATTC
TAACTCTACCTCATTTTCTCACCCTCCGTCTACACTTCGTTCCTGCAGCC
GCAGTTGGAAACTATTTCGTTGCCAAGGGAATTGGGTTCGAGAACACAGC
AGGACACGTAAAGCACCAAGCCGTGGCACTGCGTGTGCAATCCGACTTCT
CCATCTTCTTCAACTGCCACATGGATGCATACCAAGACACACTCTACACC
CAAACCTACCGCCAATTCTACCGCGACTGCACCATCACTGGTACAGTAGA
CTTCATCTTTGGCGATGGGGTGGCTTTGTTCCAAAACTGCAAGATGGTGG
TGAGAAAGCCAGGGGAAGCACAGGCTTGCATGGTGACAGCACAAGGCAGG
ACTGACCGCAACGAGATCACCGGCATTTTCCTCCAAAACTGCACCATCAC
CGGTGAGCCAGATTACATGGCTGTGAAGGATAAGAACAAGGCATACTTGG
GGAGGCCATGGAAGAAATTTGCAAGGGTAGTTGTGATGCAGTCATCGATT
GACGAAGCCATTGCACCTGAAGGGTGGACAGAATGGACTGGTGAAAAATA
CCACCAAAACTGCTTCTTTGGTGAGTACGGAAACAGGGGTCCTAGGAAGG
ACATGACCCAAAGGGTCAAATGGTCAACCGTCAAGAGACTCACTCCTGAT
CAAGCTGCGGCTTTCACCCCTGCTAGGGTGTTTGAGGGTGATAAGTGGGT
AAAGCCCAGTGGGGTTCCATATGTTCCAGGCATGATGCCCGTGTAA
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Coding sequence (CDS) from alignment at MDC018471.91:24898..26843-

>MDP0000389664 ID=MDP0000389664; Name=MDP0000389664; organism=Malus x domestica; type=CDS; length=1710bp; location=Sequence derived from: MDC018471.91:24898..26843- (Malus x domestica
ATGGCAGCTAGTGAATCAAAGAAGAAGAAGATAGCCATCATCGCCGTATT
GGTTGTACTTCTGGTGGCGATGATAGTGGCGGTGACGGTGGGTGTCAAAA
TGGCCAAAAAGGGCAACAAGAAGCCTGCCAAGGTTGGTGCGAAGAAAAAG
GCCATCGAGACCATATGCCAGGCCACCACCTACAAAGAAACCTGCCAAAG
CAGCCTCGAAAAGGAGACGGGTGACACCACCGACCCGAAGGACCTGATCA
AGGCCGAGTTCCAGGTGGCGGCGGACAAAGTTAATGAGGTGATCAAGAAC
TCGAACACCTTGAAAGAGTATGCCAAGGATCCAATGGCCAGCCAGGCTCT
GGGCGTGTGCAAGGAATTGTTGGAAACCGCAGTTGAAGATCTCCTCGGGG
CRGTTGATAAGATGGGGCCATTCGATGTTAGCAAGATCAGTGACTACCTT
GCAGATCTCAAGGTGTGGCTGAGCGCCGCCGTCAATCACCAGGCAACCTG
CCTTGACGCGTTTGAGGACACCAAAGGCGARGCCGGCGAGAAAATGAGGG
GCTTTTTGAAGACAGCGCAAGAACTCACCAGCAATGGACTTGCCATGGTC
TCGGAAATCTCTCGTCTCGTCGATTCTCCTAAATTGAACTCTCACCGTCG
CCTCATGTCCTCGTCAAAAGGCGGGCAGACAAAGAGGAATTATAAGCCAG
TGCCAGGGTGGATGAGTGATCGCCATCTGGATCTCTTGACTGCCACTCCG
GAGAGCTTGAAGCCCAACGTGGTTGTGGCTAAGGATGGGACTGGCAAGTA
TAAGACCATCAACGAGGCCTTGAAGGAGGTCCCACARAAGAGCAACGAGG
CCTTTGTGATTTATATTAAGAAGGGAATGTACGAAGAGACTGTCATCGTT
GACAAGGAAATGACCAATGTTGTGATGATTGGTGACGGTCCAACCATGAC
CAGGATCAGCGGAAGCAAGAGCCACGCGGATGGTATCACAACCATGAACA
CTGCAACCTTTGCCGCAGTTGGAAACTATTTCGTTGCCAAGGGAATTGGG
TTCGAGAACACAGCAGGACACGTAAAGCACCAAGCCGTGGCACTGCGTGT
GCAATCCGACTTCTCCATCTTCTTCAACTGCCACATGGATGCATACCAAG
ACACACTCTACACCCAAACCTACCGCCAATTCTACCGCGACTGCACCATC
ACTGGTACAGTAGACTTCATCTTTGGCGATGGGGTGGCTTTGTTCCAAAA
CTGCAAGATGGTGGTGAGAAAGCCAGGGGAAGCACAGGCTTGCATGGTGA
CAGCACAAGGCAGGACTGACCGCAACGAGATCACCGGCATTTTCCTCCAA
AACTGCACCATCACCGGTGAGCCAGATTACATGGCTGTGAAGGATAAGAA
CAAGGCATACTTGGGGAGGCCATGGAAGAAATTTGCAAGGGTAGTTGTGA
TGCAGTCATCGATTGACGAAGCCATTGCACCTGAAGGGTGGACAGAATGG
ACTGGTGAAAAATACCACCAAAACTGCTTCTTTGGTGAGTACGGAAACAG
GGGTCCTAGGAAGGACATGACCCAAAGGGTCAAATGGTCAACCGTCAAGA
GACTCACTCCTGATCAAGCTGCGGCTTTCACCCCTGCTAGGGTGTTTGAG
GGTGATAAGTGGGTAAAGCCCAGTGGGGTTCCATATGTTCCAGGCATGAT
GCCCGTGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
IPR006501Pectinesterase_inhib_dom
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR018040Pectinesterase_Tyr_AS
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
GO:0004857enzyme inhibitor activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification