MDP0000395310, MDP0000395310 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000395310
Unique Name	MDP0000395310
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1751

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr12	chromosome	chr12:12889732..12891482 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC027789.61	contig	MDC027789.61:24942..26692 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000395310_exon_1	MDP0000395310_exon_1	Malus x domestica	CDS
MDP0000395310_exon_2	MDP0000395310_exon_2	Malus x domestica	CDS
MDP0000395310_exon_3	MDP0000395310_exon_3	Malus x domestica	CDS
MDP0000395310_exon_4	MDP0000395310_exon_4	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000395310	MDP0000395310	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 205..302 score: 1.5
None	No IPR available	PANTHER	PTHR22930	FAMILY NOT NAMED	coord: 1..170 score: 1.8
None	No IPR available	PFAM	PF13359	DDE_4	coord: 2..133 score: 3.1
None	No IPR available	SEG	seg	seg	coord: 152..162 score: NAcoord: 340..354 score: NAcoord: 361..376 score
None	No IPR available	SEG	seg	seg	coord: 9..20 score
None	No IPR available	SEG	seg	seg	coord: 7..23 score
None	No IPR available	SEG	seg	seg	coord: 32..42 score
None	No IPR available	SEG	seg	seg	coord: 105..116 score
None	No IPR available	SEG	seg	seg	coord: 13..29 score: NAcoord: 36..50 score
None	No IPR available	SEG	seg	seg	coord: 4..17 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr12:12889732..12891482-
mRNA from alignment at MDC027789.61:24942..26692-
coding sequence from alignment at MDC027789.61:24942..26692-

mRNA sequence

>MDP0000395310 ID=MDP0000395310; Name=MDP0000395310; organism=Malus x domestica; type=mRNA; length=1751bp
ATGTTGGGAGTTTGTAATCTGGACATGAATTTTATATTTGTGTACCCAGG
TTGGGAAGGGTTGACCTYTGATTCTAGAGTACTCCGAGATGCGATAAGTA
GACCATCGGGATTAAAAGTTCCCGTGGGTAACAATAGATTTTTTGTTTAT
ATTATTAATTTGAATCCTCATTTTTCTTATATATAGTAATATACATTTTT
TGATGTGTTAGGGTGTTACTACCTTGTGGATGGTGGGTACACAAATGGTC
CAGGATACCTTGCACCGTATAGGGGAGTGCGTTACCATCTCGCGAAGTGG
AGAAATAGAAGACTCCCAATTAATCATGAGGAGTATTTCAATATGAAACA
TGCTCAAGCTAGAAATGTCATTGAGAGATGTTYTGGACTACTTAAGATGC
GTTGGAGCATCTTAAGAGGTCCATCATTTTTCCCRATTAAAACACAACTT
AGAATTATGACAGCCTGCTGCCTATTACATAATCTTATTAGAAGGCATAW
GTCAGCTGATMCAATAGAAAATGAAATCCTAAACTTGGACGAATCTGAAA
GTAGTGATTATGATGAAGATATGATTGAGACTGTTCAACCTACACAAGAW
TGGACTGCATGKAGAAACACTTTGGCCATGAATATGTACAATGAGTGGCR
TGCACAAGTGTGATTTGATTAAATTTTCTTACATATGCATGTTGTCATTT
GGTTATGGTTTGTTATTTGAACAMATAGTGATTTCTTATGTATTCRGTTA
TGATACTTTATTTGAACAAAGTGTGACCTRGTTATGTATTTATTTAAAAA
GTGTGATGATTTGCTTATGGTTTTTATCACTTACTATTAATTATATGCAC
TGTTGATTATATGCTATCTTATTGTGTATGTAATTATAGGAATGGAAAGT
GAACAAAGTAGTCAACCAAAAGGAAGTAGAAGGGTTTGGAAACAACATGA
AGAAGATGCATTGYTGTCCATACTTGAGGATGCAGTTGTTAAGAATTTGC
GATGTGATAACAGTTGTTTCAAAACCGGAACAATGGCTCAATTTGAAACA
GCTATTAATTTGAAATGTCCTAATGCCAATATAAGGGCAGTTCCACATAT
TGAGTCCAAAATGAGGAGGTGGAAAAACGATTATGCAATAGTTTATGACA
TGGTTAATAAAACTGGCTTTGCATGGAATGATGTACAAAAGTGTATTGAG
GTTGATAGCACTGAAGTATGGCAGTCCTATGTGAAGGTAATTCTCTAACA
TGATACTAGAATTTAACTTTACATATTTGATTACTTAACATGTTCCTTTA
CATACAATTTAATAGTATGATTGTGTCTACCAAACCATATCCTCTAGCCC
CATTCATTATGACAGCTTAATTAAATTAATGGATGCTTGATTATATCAAG
ACAGGTTGAAGAGAACAAAATAAGATTATTTGTATTTTATGGATAATGTG
ATTTGTTTTTGCATTGCAAGTTAACAAAGAAGCAGAGGGCTGGCTAGGAA
AATCGTTTCCATTGTATGACAGATTGAATGTTATTTTTGGGAAAGACYRA
GCAACTGRAGTAGGAGCTGCAACTCCTACTGAGATGATGAATGAGCTTGA
GCACATTAATGAAGATGAAGATGAAGATGAGGTGGAGACTAGTTCTCCTT
MTGTTGCTCGACGGYCTAGCAGTTCAAGTACCCGGAAAAGGAAGAGAGCT
ACTAATGATAATGATCTTGWTGTGGCATTTAAAGAAATGCTTTATGAATA
A

protein sequence of MDP0000395310

>MDP0000395310 ID=MDP0000395310; Name=MDP0000395310; organism=Malus x domestica; type=polypeptide; length=392bp
MLGVCNLDMNFIFVYPGWEGLTXDSRVLRDAISRPSGLKVPVGCYYLVDG
GYTNGPGYLAPYRGVRYHLAKWRNRRLPINHEEYFNMKHAQARNVIERCX
GLLKMRWSILRGPSFFPIKTQLRIMTACCLLHNLIRRHXSADXIENEILN
LDESESSDYDEDMIETVQPTQXWTAXRNTLAMNMYNEWRMESEQSSQPKG
SRRVWKQHEEDALXSILEDAVVKNLRCDNSCFKTGTMAQFETAINLKCPN
ANIRAVPHIESKMRRWKNDYAIVYDMVNKTGFAWNDVQKCIEVDSTEVWQ
SYVKGWLGKSFPLYDRLNVIFGKDXATXVGAATPTEMMNELEHINEDEDE
DEVETSSPXVARRXSSSSTRKRKRATNDNDLXVAFKEMLYE*

mRNA from alignment at chr12:12889732..12891482-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000395310 ID=MDP0000395310; Name=MDP0000395310; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr12:12889732..12891482- (Malus x domestica

mRNA from alignment at MDC027789.61:24942..26692-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000395310 ID=MDP0000395310; Name=MDP0000395310; organism=Malus x domestica; type=mRNA; length=1751bp; location=Sequence derived from: MDC027789.61:24942..26692- (Malus x domestica
ATGTTGGGAGTTTGTAATCTGGACATGAATTTTATATTTGTGTACCCAGG
TTGGGAAGGGTTGACCTYTGATTCTAGAGTACTCCGAGATGCGATAAGTA
GACCATCGGGATTAAAAGTTCCCGTGGGTAACAATAGATTTTTTGTTTAT
ATTATTAATTTGAATCCTCATTTTTCTTATATATAGTAATATACATTTTT
TGATGTGTTAGGGTGTTACTACCTTGTGGATGGTGGGTACACAAATGGTC
CAGGATACCTTGCACCGTATAGGGGAGTGCGTTACCATCTCGCGAAGTGG
AGAAATAGAAGACTCCCAATTAATCATGAGGAGTATTTCAATATGAAACA
TGCTCAAGCTAGAAATGTCATTGAGAGATGTTYTGGACTACTTAAGATGC
GTTGGAGCATCTTAAGAGGTCCATCATTTTTCCCRATTAAAACACAACTT
AGAATTATGACAGCCTGCTGCCTATTACATAATCTTATTAGAAGGCATAW
GTCAGCTGATMCAATAGAAAATGAAATCCTAAACTTGGACGAATCTGAAA
GTAGTGATTATGATGAAGATATGATTGAGACTGTTCAACCTACACAAGAW
TGGACTGCATGKAGAAACACTTTGGCCATGAATATGTACAATGAGTGGCR
TGCACAAGTGTGATTTGATTAAATTTTCTTACATATGCATGTTGTCATTT
GGTTATGGTTTGTTATTTGAACAMATAGTGATTTCTTATGTATTCRGTTA
TGATACTTTATTTGAACAAAGTGTGACCTRGTTATGTATTTATTTAAAAA
GTGTGATGATTTGCTTATGGTTTTTATCACTTACTATTAATTATATGCAC
TGTTGATTATATGCTATCTTATTGTGTATGTAATTATAGGAATGGAAAGT
GAACAAAGTAGTCAACCAAAAGGAAGTAGAAGGGTTTGGAAACAACATGA
AGAAGATGCATTGYTGTCCATACTTGAGGATGCAGTTGTTAAGAATTTGC
GATGTGATAACAGTTGTTTCAAAACCGGAACAATGGCTCAATTTGAAACA
GCTATTAATTTGAAATGTCCTAATGCCAATATAAGGGCAGTTCCACATAT
TGAGTCCAAAATGAGGAGGTGGAAAAACGATTATGCAATAGTTTATGACA
TGGTTAATAAAACTGGCTTTGCATGGAATGATGTACAAAAGTGTATTGAG
GTTGATAGCACTGAAGTATGGCAGTCCTATGTGAAGGTAATTCTCTAACA
TGATACTAGAATTTAACTTTACATATTTGATTACTTAACATGTTCCTTTA
CATACAATTTAATAGTATGATTGTGTCTACCAAACCATATCCTCTAGCCC
CATTCATTATGACAGCTTAATTAAATTAATGGATGCTTGATTATATCAAG
ACAGGTTGAAGAGAACAAAATAAGATTATTTGTATTTTATGGATAATGTG
ATTTGTTTTTGCATTGCAAGTTAACAAAGAAGCAGAGGGCTGGCTAGGAA
AATCGTTTCCATTGTATGACAGATTGAATGTTATTTTTGGGAAAGACYRA
GCAACTGRAGTAGGAGCTGCAACTCCTACTGAGATGATGAATGAGCTTGA
GCACATTAATGAAGATGAAGATGAAGATGAGGTGGAGACTAGTTCTCCTT
MTGTTGCTCGACGGYCTAGCAGTTCAAGTACCCGGAAAAGGAAGAGAGCT
ACTAATGATAATGATCTTGWTGTGGCATTTAAAGAAATGCTTTATGAATA
A

Coding sequence (CDS) from alignment at MDC027789.61:24942..26692-

>MDP0000395310 ID=MDP0000395310; Name=MDP0000395310; organism=Malus x domestica; type=CDS; length=1176bp; location=Sequence derived from: MDC027789.61:24942..26692- (Malus x domestica
ATGTTGGGAGTTTGTAATCTGGACATGAATTTTATATTTGTGTACCCAGG
TTGGGAAGGGTTGACCTYTGATTCTAGAGTACTCCGAGATGCGATAAGTA
GACCATCGGGATTAAAAGTTCCCGTGGGGTGTTACTACCTTGTGGATGGT
GGGTACACAAATGGTCCAGGATACCTTGCACCGTATAGGGGAGTGCGTTA
CCATCTCGCGAAGTGGAGAAATAGAAGACTCCCAATTAATCATGAGGAGT
ATTTCAATATGAAACATGCTCAAGCTAGAAATGTCATTGAGAGATGTTYT
GGACTACTTAAGATGCGTTGGAGCATCTTAAGAGGTCCATCATTTTTCCC
RATTAAAACACAACTTAGAATTATGACAGCCTGCTGCCTATTACATAATC
TTATTAGAAGGCATAWGTCAGCTGATMCAATAGAAAATGAAATCCTAAAC
TTGGACGAATCTGAAAGTAGTGATTATGATGAAGATATGATTGAGACTGT
TCAACCTACACAAGAWTGGACTGCATGKAGAAACACTTTGGCCATGAATA
TGTACAATGAGTGGCGAATGGAAAGTGAACAAAGTAGTCAACCAAAAGGA
AGTAGAAGGGTTTGGAAACAACATGAAGAAGATGCATTGYTGTCCATACT
TGAGGATGCAGTTGTTAAGAATTTGCGATGTGATAACAGTTGTTTCAAAA
CCGGAACAATGGCTCAATTTGAAACAGCTATTAATTTGAAATGTCCTAAT
GCCAATATAAGGGCAGTTCCACATATTGAGTCCAAAATGAGGAGGTGGAA
AAACGATTATGCAATAGTTTATGACATGGTTAATAAAACTGGCTTTGCAT
GGAATGATGTACAAAAGTGTATTGAGGTTGATAGCACTGAAGTATGGCAG
TCCTATGTGAAGGGCTGGCTAGGAAAATCGTTTCCATTGTATGACAGATT
GAATGTTATTTTTGGGAAAGACYRAGCAACTGRAGTAGGAGCTGCAACTC
CTACTGAGATGATGAATGAGCTTGAGCACATTAATGAAGATGAAGATGAA
GATGAGGTGGAGACTAGTTCTCCTTMTGTTGCTCGACGGYCTAGCAGTTC
AAGTACCCGGAAAAGGAAGAGAGCTACTAATGATAATGATCTTGWTGTGG
CATTTAAAGAAATGCTTTATGAATAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR024752	Myb/SANT-like_dom