MDP0000569149, MDP0000569149 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000569149
Unique NameMDP0000569149
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1314
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000569149_exon_1MDP0000569149_exon_1Malus x domesticaCDS
MDP0000569149_exon_2MDP0000569149_exon_2Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000569149MDP0000569149Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012862Protein of unknown function DUF1635PFAMPF07795DUF1635coord: 17..244
score: 8.1
NoneNo IPR availableCOILcoilcoiled-coilcoord: 34..53
score: NAcoord: 54..76
score
NoneNo IPR availableSEGsegsegcoord: 22..32
score
NoneNo IPR availableSEGsegsegcoord: 11..29
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000569149 ID=MDP0000569149; Name=MDP0000569149; organism=Malus x domestica; type=mRNA; length=1314bp
ATGCAGGATTTGTTGACCAGGACGTGGGATTTGCATGGGCCCTTGTTGGG
TTTTCACTTTTCTTCCTAACTTTGAAATACCATGATTTTGTTTTGATCCT
CCTCCTTTATGTTCCTGTTGAGAACTTTTGGGGTTTTCGGTGTTCATGTT
GTTGTTTGAACCTGTGGCCTTTGATGTTGGTTTTGGTTTGTCTGATCTTG
AAAATGTTTTGAGTGCGACAGTCTCACCGTCTGATGTTACTAATTCATGC
GTTATGATTTGAGTYTATTCACGAAGAGATTGTTTCTGTTCTTTTCTATT
ATGTTCAGAATTGTTCTTTTCATGTTCTTCAATTTATTTATTCTGATGGA
TTTTGAAACTCATTTCTCAAATCCTGTTTCGAATTGACAGAGCGCTGAGG
AGTTGAAGCAGAAGCTTCTGTACACAACCCTTGAGCTAGAATCTGTAAAA
ACACGCGCAACGGAAGAAATCCGGAAAAGCGAGGAGAATGTGAAGAAACT
AGTCRATCTTCTAAACGTTGCATACAAAGAAAGACAAGATGCCGTGGATC
AGCTACAAAAGCTCGTAAACAAGATCATGCCTTCAAGTCCAATGGAACTC
CCCCTCAACATGTTTCCTCATGAAAGTACACTTTTGCTTCCCACCAAAGC
AAACTCAAGCATAACTGAATCCAACAGCCTCTCTGAAACCTACAATCCCC
AAAAATCGCACGCCTCTTCCTCTGTGGACTCCTTATTTGATGCGGTTTCT
TCACCCGAGTTTTCAAACATGAACATGGCTGAATCTGGCTGCATCCCTTT
AGTGAAGCAGCAGCCTCTGGTGCAAGAATATAATGGCATTGTATCTGCTG
GTGTAGTCTCTTCAGGGATGATCAAACCCGACCCGGCTTCTCARGTGATT
GACAATTTTGTTAAAGGAAAGATTTTGCCTCAACAGGGCAAGCTCTTGCA
GACTGTGATGCAAGCCGGTCCACTGCTCCAGACACTTCTTGTTTCCGGGC
CAATGCCTCGTTGGCGAAACCCCCCTCCTTTGCAGCCCTTCAAAATCCCA
CCTGTTTCAATCCAAGGCTGTGAAGCTGCTGCAAGCTTCAACCAGAAACC
AGTGGGAAATGCTAGTTATGTTGTCCATAAGCCAATCAACTCCGCGTCAT
ATCCTGAGATGTCTCGCGGGTTTTCGCAGACATGTTCGGCTTCCTTGTTG
AACTTCAACAACGGTGGTGCTTCTGTTTCATGCCTGAACAATGCAAGGAT
GTTGSCTTCGAATTCCGGCATTGACCACCAATTTTCGATTGGCAAGCGGC
AGAGGCTTCAATGA
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protein sequence of MDP0000569149

>MDP0000569149 ID=MDP0000569149; Name=MDP0000569149; organism=Malus x domestica; type=polypeptide; length=322bp
MQDLLTRTWDLHGPFAEELKQKLLYTTLELESVKTRATEEIRKSEENVKK
LVXLLNVAYKERQDAVDQLQKLVNKIMPSSPMELPLNMFPHESTLLLPTK
ANSSITESNSLSETYNPQKSHASSSVDSLFDAVSSPEFSNMNMAESGCIP
LVKQQPLVQEYNGIVSAGVVSSGMIKPDPASQVIDNFVKGKILPQQGKLL
QTVMQAGPLLQTLLVSGPMPRWRNPPPLQPFKIPPVSIQGCEAAASFNQK
PVGNASYVVHKPINSASYPEMSRGFSQTCSASLLNFNNGGASVSCLNNAR
MLXSNSGIDHQFSIGKRQRLQ*
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mRNA from alignment at chr3:8896466..8897779+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000569149 ID=MDP0000569149; Name=MDP0000569149; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr3:8896466..8897779+ (Malus x domestica
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mRNA from alignment at MDC000267.350:69..1382+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000569149 ID=MDP0000569149; Name=MDP0000569149; organism=Malus x domestica; type=mRNA; length=1314bp; location=Sequence derived from: MDC000267.350:69..1382+ (Malus x domestica
ATGCAGGATTTGTTGACCAGGACGTGGGATTTGCATGGGCCCTTGTTGGG
TTTTCACTTTTCTTCCTAACTTTGAAATACCATGATTTTGTTTTGATCCT
CCTCCTTTATGTTCCTGTTGAGAACTTTTGGGGTTTTCGGTGTTCATGTT
GTTGTTTGAACCTGTGGCCTTTGATGTTGGTTTTGGTTTGTCTGATCTTG
AAAATGTTTTGAGTGCGACAGTCTCACCGTCTGATGTTACTAATTCATGC
GTTATGATTTGAGTYTATTCACGAAGAGATTGTTTCTGTTCTTTTCTATT
ATGTTCAGAATTGTTCTTTTCATGTTCTTCAATTTATTTATTCTGATGGA
TTTTGAAACTCATTTCTCAAATCCTGTTTCGAATTGACAGAGCGCTGAGG
AGTTGAAGCAGAAGCTTCTGTACACAACCCTTGAGCTAGAATCTGTAAAA
ACACGCGCAACGGAAGAAATCCGGAAAAGCGAGGAGAATGTGAAGAAACT
AGTCRATCTTCTAAACGTTGCATACAAAGAAAGACAAGATGCCGTGGATC
AGCTACAAAAGCTCGTAAACAAGATCATGCCTTCAAGTCCAATGGAACTC
CCCCTCAACATGTTTCCTCATGAAAGTACACTTTTGCTTCCCACCAAAGC
AAACTCAAGCATAACTGAATCCAACAGCCTCTCTGAAACCTACAATCCCC
AAAAATCGCACGCCTCTTCCTCTGTGGACTCCTTATTTGATGCGGTTTCT
TCACCCGAGTTTTCAAACATGAACATGGCTGAATCTGGCTGCATCCCTTT
AGTGAAGCAGCAGCCTCTGGTGCAAGAATATAATGGCATTGTATCTGCTG
GTGTAGTCTCTTCAGGGATGATCAAACCCGACCCGGCTTCTCARGTGATT
GACAATTTTGTTAAAGGAAAGATTTTGCCTCAACAGGGCAAGCTCTTGCA
GACTGTGATGCAAGCCGGTCCACTGCTCCAGACACTTCTTGTTTCCGGGC
CAATGCCTCGTTGGCGAAACCCCCCTCCTTTGCAGCCCTTCAAAATCCCA
CCTGTTTCAATCCAAGGCTGTGAAGCTGCTGCAAGCTTCAACCAGAAACC
AGTGGGAAATGCTAGTTATGTTGTCCATAAGCCAATCAACTCCGCGTCAT
ATCCTGAGATGTCTCGCGGGTTTTCGCAGACATGTTCGGCTTCCTTGTTG
AACTTCAACAACGGTGGTGCTTCTGTTTCATGCCTGAACAATGCAAGGAT
GTTGSCTTCGAATTCCGGCATTGACCACCAATTTTCGATTGGCAAGCGGC
AGAGGCTTCAATGA
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Coding sequence (CDS) from alignment at MDC000267.350:69..1382+

>MDP0000569149 ID=MDP0000569149; Name=MDP0000569149; organism=Malus x domestica; type=CDS; length=966bp; location=Sequence derived from: MDC000267.350:69..1382+ (Malus x domestica
ATGCAGGATTTGTTGACCAGGACGTGGGATTTGCATGGGCCCTTCGCTGA
GGAGTTGAAGCAGAAGCTTCTGTACACAACCCTTGAGCTAGAATCTGTAA
AAACACGCGCAACGGAAGAAATCCGGAAAAGCGAGGAGAATGTGAAGAAA
CTAGTCRATCTTCTAAACGTTGCATACAAAGAAAGACAAGATGCCGTGGA
TCAGCTACAAAAGCTCGTAAACAAGATCATGCCTTCAAGTCCAATGGAAC
TCCCCCTCAACATGTTTCCTCATGAAAGTACACTTTTGCTTCCCACCAAA
GCAAACTCAAGCATAACTGAATCCAACAGCCTCTCTGAAACCTACAATCC
CCAAAAATCGCACGCCTCTTCCTCTGTGGACTCCTTATTTGATGCGGTTT
CTTCACCCGAGTTTTCAAACATGAACATGGCTGAATCTGGCTGCATCCCT
TTAGTGAAGCAGCAGCCTCTGGTGCAAGAATATAATGGCATTGTATCTGC
TGGTGTAGTCTCTTCAGGGATGATCAAACCCGACCCGGCTTCTCARGTGA
TTGACAATTTTGTTAAAGGAAAGATTTTGCCTCAACAGGGCAAGCTCTTG
CAGACTGTGATGCAAGCCGGTCCACTGCTCCAGACACTTCTTGTTTCCGG
GCCAATGCCTCGTTGGCGAAACCCCCCTCCTTTGCAGCCCTTCAAAATCC
CACCTGTTTCAATCCAAGGCTGTGAAGCTGCTGCAAGCTTCAACCAGAAA
CCAGTGGGAAATGCTAGTTATGTTGTCCATAAGCCAATCAACTCCGCGTC
ATATCCTGAGATGTCTCGCGGGTTTTCGCAGACATGTTCGGCTTCCTTGT
TGAACTTCAACAACGGTGGTGCTTCTGTTTCATGCCTGAACAATGCAAGG
ATGTTGSCTTCGAATTCCGGCATTGACCACCAATTTTCGATTGGCAAGCG
GCAGAGGCTTCAATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012862DUF1635