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Transcript Overview
Name | MDP0000574604 |
Unique Name | MDP0000574604 |
Type | mRNA |
Organism | Malus x domestica (Apple) |
Sequence length | 3084 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
MDP0000574604 | MDP0000574604 | Malus x domestica | polypeptide |
InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR000719 | Protein kinase, catalytic domain | PROFILE | PS50011 | PROTEIN_KINASE_DOM | coord: 348..616 score: 31 |
IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain | PFAM | PF07714 | Pkinase_Tyr | coord: 352..612 score: 1.1 |
IPR002290 | Serine/threonine- / dual-specificity protein kinase, catalytic domain | SMART | SM00220 | Serine/Threonine protein kinases, catalytic | coord: 348..613 score: 4.7 |
IPR011009 | Protein kinase-like domain | SUPERFAMILY | 56112 | Protein kinase-like (PK-like) | coord: 316..621 score: 1.2 |
IPR013210 | Leucine-rich repeat-containing N-terminal, type 2 | PFAM | PF08263 | LRRNT_2 | coord: 32..67 score: 7.7 |
IPR020635 | Tyrosine-protein kinase, catalytic domain | SMART | SM00219 | Tyrosine kinase, catalytic domain | coord: 348..613 score: 5.1 |
None | No IPR available | GENE3D | 1.10.510.10 | no description | coord: 409..613 score: 1.8 |
None | No IPR available | GENE3D | 3.30.200.20 | no description | coord: 274..408 score: 1.5 |
None | No IPR available | GENE3D | 3.80.10.10 | no description | coord: 33..232 score: 2.4 |
None | No IPR available | PANTHER | PTHR24420 | FAMILY NOT NAMED | coord: 10. |
None | No IPR available | PANTHER | PTHR24420:SF779 | SUBFAMILY NOT NAMED | coord: 10. |
None | No IPR available | PFAM | PF12799 | LRR_4 | coord: 96..133 score: 1.7 |
None | No IPR available | SEG | seg | seg | coord: 76..89 score: NAcoord: 98..109 score: NAcoord: 234..250 score: NAcoord: 271..285 score: NAcoord: 286..300 score: NAcoord: 371..385 score: NAcoord: 424..440 score |
None | No IPR available | SUPERFAMILY | 52058 | L domain-like | coord: 27..233 score: 2 |
None | No IPR available | SEG | seg | seg | coord: 41..66 score |
None | No IPR available | SEG | seg | seg | coord: 31..62 score |
None | No IPR available | SEG | seg | seg | coord: 61..89 score |
None | No IPR available | SEG | seg | seg | coord: 31..67 score: NAcoord: 87..97 score |
None | No IPR available | SEG | seg | seg | coord: 28..47 score: NAcoord: 84..102 score |
None | No IPR available | SEG | seg | seg | coord: 2..17 score: NAcoord: 20..33 score |
None | No IPR available | SEG | seg | seg | coord: 25..47 score |
None | No IPR available | SEG | seg | seg | coord: 21..30 score: NAcoord: 74..95 score |
None | No IPR available | SEG | seg | seg | coord: 25..44 score: NAcoord: 49..59 score |
None | No IPR available | SEG | seg | seg | coord: 27..41 score |
None | No IPR available | SEG | seg | seg | coord: 23..44 score |
None | No IPR available | SEG | seg | seg | coord: 35..68 score: NAcoord: 88..105 score |
Sequences
The
following sequences are available for this feature:
mRNA sequence >MDP0000574604 ID=MDP0000574604; Name=MDP0000574604; organism=Malus x domestica; type=mRNA; length=3084bp ATGGCAGTGAGTTTTAGTGCTGCTACTGTGGTGGGTTTTGTTCTGATTAC GCTTCTGTCACTGAGTGGCGAGCGAGTCAACTCGGAGCCGATTCAGGACA AGCAAGCCCTCCTTGCGTTTCTGTCCCAGACTCCACATGCGAACCGGGTC CAATGGAACGCGTCGGTTTCGGCCTGCACCTGGGTCGGAATCAAATGCGA CGACAACCAGTCCTACGTCTACTCCCTCCGCCTCCCGGGTGTCGGCCTCG TCGGGCCCGTCCCGCCCAACACGCTCGGCCGGCTGACTCARCTTCGGGTT CTCAGTCTCCGTTCTAACCGACTCTCCGGTCCYATCCCTGCCGATTTCTC CAACCTAACTCTGCTCCGCAGTCTCTACCTCCAGGGGAATCAATTATCGG GTGAGTTTCCGACCGGGCTGACCCAGTTGGAGCGGTTGAACAGGCTCGTT CTCAGCTCCAACAACTTCACCGGTCCGATTCCATTTGCCGTCAGCAACCT GACCCACTTGACGGTACTCTTTSTTGAAAACAATGGTTTCTCAGGCAAGC TGCCGAACATCCAGGCTCCCAATCTAACCAACTTCAACGTTTCAAACAAC AAACTCAACGGCTCGATCCCGCAATCGCTATCAAACTTCCCCGCCTCTGC ATTCTCTGGAAACTTAGATCTTTGCGGTGGCCCGCTTAAGGCGTGCAACC CGTTTTTCCCTGCTCCCGCTCCGTCGCCCGAGTCCCCGCCCATAATCCCA GCCCACAAAAAGTCCAAGAAGCTCTCTACCGCCGCCATTGTCGCCATCGC CGTGGGGTCCGCTCTAGCCCTGTTCCTACTCCTCCTCGTACTCTTCCTCT GCCTCCGGAAACGGCGCCGACAGCAGCCRGCGAAGGCGCCAAAGCCACCT GTGGCCACACGGTCGGTAGAGACGGAGGCTGGAACATCATCCTCGAAAGA CGACATCACGGGCGGGTCCACCGAGGCGGAGAGAAACAAACTTGTGTTCT TCAACGGCGGAGTTTACAGCTTCGATTTGGAGGACTTGTTGAGAGCGTCG GCTGAGGTTTTGGGGAAGGGAAGCGTGGGGACGTCGTACAAGGCGGTGCT GGAGGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGACGTCGTGGTTA CGAAGAGAGAGTTCGAGATGACAATGGAGGTTCTGGGGAAGATTAAGCAC GACAATGTGGTGCCGCTGCGCGCGTTTTACTTCTCGAAGGACGAGAAATT GCTCGTCTCCGATTACATGTCCGCCGGCAGCTTGTCTGCCCTTCTCCACG GTACGATTTCGATTCCGAATTTCCTCTTAATTTTCCATTTKTCAATTATA CAATTTAATGCTGATTATTTTTTATATAATTAAAACTTAATTGGTTTAAT CCGASGGAATAAATGTAGTTCTCGTAGGTATAATTTCATAGAAAATTAGC ATCTGGGTTTTTTTTTTTTTAAATTCTTCAGTTTCTGGATTTTCTRATCG GCGGTGAGTGCGCTGAATTCACTGGGATATAGCCGTTTCTGTACAAACAT TCTTAGGCCGGTTTCCTATTTGTTTTTTTCACCAAAAACGGCTTTATAAA TTAGCAATTAAAAAGGGTTTTGCAAAAATAAAATATGTGCTTATTTTAAA AATTATAATCTCTAGACATTAACTTTTAAATTTAGCAAAATTACTTTAAT AAAAACCGGATAAAAAACGGAGTTAATTTTTGATAAATATTTTTAATTTC TATAATACGTTTTAAAAAATCATTACTTAATGCACGGCAGAAATAAGTTG TCGAACAATCCCGCAGCAATTTAAAGCCATACGCATAAATGTTTTTATTT TTCGTTTTTAGAGCAAAATAAAAAAAAATTTGGATATAAAAAGAGAAACA TGAAGTTGCCGTCATGATTCACCATGGACCATGGTGGTCTGGTCACCGAC ATTATTTCACTTTTCTCTTTTATTTTCTGTGCAAAGGCTTTTACTTCTTT TTAGGAAAAGTTAAAAGATACCTAACAAAATTAAAAAATTAAATTAAAAA TAAACAAGCAGTTCATTAAAGTTACGAACAATTCGACGCATCAGTTATCA TGCGAGTTTGCGCTTTTGCCCTCTAGATTTCATTCGCCTCTCATAAATTA AGAGAAAAATTTACCTATGCTTCACGTGTCAATGTAGCGGTCTAAATCAA TTTTACGTGCATATGATAATATTTGAAAATTGTTATTAGTATTCTAAAAA TTTCATTCTATACTTTTCTTTTTAATTATCAAAAACCTGGAATGCTAAAT AAAATTTTCTTAATATTTTATTAATTGATTGAGTTAAAATACCGCTACAT TAGCGTTAAATAATTTTAGAATGTTGCATTCTCTAAAAAGAAAACATCTT ATAATATAATTTACAGGGAGTAGAGGCTCGGGCCGGACGCCACTAGACTG GGACAACCGCATGAAAATAGCGCTGAGCGCGGCAAGAGGAATAGCGCACC TCCACGTGTCAGGCAAGGTGGTCCACGGCAACATTAAATCCTCCAACATC CTCCTCCGGCCGGACAACGACGCTTCCGTTTCCGACTTCGGGCTCAACCC GCTCTTCGGGACTTCYACGCCGCCGAACCGGGTGGCGGGATACCGCGCGC CGGAGGTGGTGGAGACCCGGAAGGTSACGTTCAAATCCGACGTGTACAGT TTTGGCGTGTTGCTGCTGGAGCTGTTAACCGGGAAAGCGCCCAATCAGGC GTCGCTGGGKGAGGAGGGGATCGATTTGCCACGGTGGGTGCAGTCGGTGG TMMGGGAGGAGTGGACGGCGGAGGTCTTCGACGTGGAGCTGATGAGGTAC CACAACATYGAGGAGGAGATGGTGCAGCTTTTACAGATCGCCATGGCGTG CGTGTCCACGGTACCCGATCAAAGACCCGCAATGCAGGAGGTGGTCCGGA TGATCGAAGATATGAACCGGGCCGAGACCGATGACGGGTTACGACAGTCG TCCGATGATCCYTCGAAAGGATCGGACGGTCATACTCCTCCCGSTGGGTC GAGGACCCCACCCAGCGTCACACCCACGCCTTAG back to topprotein sequence of MDP0000574604 >MDP0000574604 ID=MDP0000574604; Name=MDP0000574604; organism=Malus x domestica; type=polypeptide; length=656bp MAVSFSAATVVGFVLITLLSLSGERVNSEPIQDKQALLAFLSQTPHANRV QWNASVSACTWVGIKCDDNQSYVYSLRLPGVGLVGPVPPNTLGRLTQLRV LSLRSNRLSGPIPADFSNLTLLRSLYLQGNQLSGEFPTGLTQLERLNRLV LSSNNFTGPIPFAVSNLTHLTVLFXENNGFSGKLPNIQAPNLTNFNVSNN KLNGSIPQSLSNFPASAFSGNLDLCGGPLKACNPFFPAPAPSPESPPIIP AHKKSKKLSTAAIVAIAVGSALALFLLLLVLFLCLRKRRRQQPAKAPKPP VATRSVETEAGTSSSKDDITGGSTEAERNKLVFFNGGVYSFDLEDLLRAS AEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKREFEMTMEVLGKIKH DNVVPLRAFYFSKDEKLLVSDYMSAGSLSALLHGSRGSGRTPLDWDNRMK IALSAARGIAHLHVSGKVVHGNIKSSNILLRPDNDASVSDFGLNPLFGTS TPPNRVAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKAPNQASLGEE GIDLPRWVQSVVXEEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVSTVP DQRPAMQEVVRMIEDMNRAETDDGLRQSSDDPSKGSDGHTPPXGSRTPPS VTPTP* back to topmRNA from alignment at chr2:3776196..3779279- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000574604 ID=MDP0000574604; Name=MDP0000574604; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr2:3776196..3779279- (Malus x domestica
back to topmRNA from alignment at MDC012354.211:15945..19028- Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >MDP0000574604 ID=MDP0000574604; Name=MDP0000574604; organism=Malus x domestica; type=mRNA; length=3084bp; location=Sequence derived from: MDC012354.211:15945..19028- (Malus x domestica ATGGCAGTGAGTTTTAGTGCTGCTACTGTGGTGGGTTTTGTTCTGATTAC
GCTTCTGTCACTGAGTGGCGAGCGAGTCAACTCGGAGCCGATTCAGGACA
AGCAAGCCCTCCTTGCGTTTCTGTCCCAGACTCCACATGCGAACCGGGTC
CAATGGAACGCGTCGGTTTCGGCCTGCACCTGGGTCGGAATCAAATGCGA
CGACAACCAGTCCTACGTCTACTCCCTCCGCCTCCCGGGTGTCGGCCTCG
TCGGGCCCGTCCCGCCCAACACGCTCGGCCGGCTGACTCARCTTCGGGTT
CTCAGTCTCCGTTCTAACCGACTCTCCGGTCCYATCCCTGCCGATTTCTC
CAACCTAACTCTGCTCCGCAGTCTCTACCTCCAGGGGAATCAATTATCGG
GTGAGTTTCCGACCGGGCTGACCCAGTTGGAGCGGTTGAACAGGCTCGTT
CTCAGCTCCAACAACTTCACCGGTCCGATTCCATTTGCCGTCAGCAACCT
GACCCACTTGACGGTACTCTTTSTTGAAAACAATGGTTTCTCAGGCAAGC
TGCCGAACATCCAGGCTCCCAATCTAACCAACTTCAACGTTTCAAACAAC
AAACTCAACGGCTCGATCCCGCAATCGCTATCAAACTTCCCCGCCTCTGC
ATTCTCTGGAAACTTAGATCTTTGCGGTGGCCCGCTTAAGGCGTGCAACC
CGTTTTTCCCTGCTCCCGCTCCGTCGCCCGAGTCCCCGCCCATAATCCCA
GCCCACAAAAAGTCCAAGAAGCTCTCTACCGCCGCCATTGTCGCCATCGC
CGTGGGGTCCGCTCTAGCCCTGTTCCTACTCCTCCTCGTACTCTTCCTCT
GCCTCCGGAAACGGCGCCGACAGCAGCCRGCGAAGGCGCCAAAGCCACCT
GTGGCCACACGGTCGGTAGAGACGGAGGCTGGAACATCATCCTCGAAAGA
CGACATCACGGGCGGGTCCACCGAGGCGGAGAGAAACAAACTTGTGTTCT
TCAACGGCGGAGTTTACAGCTTCGATTTGGAGGACTTGTTGAGAGCGTCG
GCTGAGGTTTTGGGGAAGGGAAGCGTGGGGACGTCGTACAAGGCGGTGCT
GGAGGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGACGTCGTGGTTA
CGAAGAGAGAGTTCGAGATGACAATGGAGGTTCTGGGGAAGATTAAGCAC
GACAATGTGGTGCCGCTGCGCGCGTTTTACTTCTCGAAGGACGAGAAATT
GCTCGTCTCCGATTACATGTCCGCCGGCAGCTTGTCTGCCCTTCTCCACG
GTACGATTTCGATTCCGAATTTCCTCTTAATTTTCCATTTKTCAATTATA
CAATTTAATGCTGATTATTTTTTATATAATTAAAACTTAATTGGTTTAAT
CCGASGGAATAAATGTAGTTCTCGTAGGTATAATTTCATAGAAAATTAGC
ATCTGGGTTTTTTTTTTTTTAAATTCTTCAGTTTCTGGATTTTCTRATCG
GCGGTGAGTGCGCTGAATTCACTGGGATATAGCCGTTTCTGTACAAACAT
TCTTAGGCCGGTTTCCTATTTGTTTTTTTCACCAAAAACGGCTTTATAAA
TTAGCAATTAAAAAGGGTTTTGCAAAAATAAAATATGTGCTTATTTTAAA
AATTATAATCTCTAGACATTAACTTTTAAATTTAGCAAAATTACTTTAAT
AAAAACCGGATAAAAAACGGAGTTAATTTTTGATAAATATTTTTAATTTC
TATAATACGTTTTAAAAAATCATTACTTAATGCACGGCAGAAATAAGTTG
TCGAACAATCCCGCAGCAATTTAAAGCCATACGCATAAATGTTTTTATTT
TTCGTTTTTAGAGCAAAATAAAAAAAAATTTGGATATAAAAAGAGAAACA
TGAAGTTGCCGTCATGATTCACCATGGACCATGGTGGTCTGGTCACCGAC
ATTATTTCACTTTTCTCTTTTATTTTCTGTGCAAAGGCTTTTACTTCTTT
TTAGGAAAAGTTAAAAGATACCTAACAAAATTAAAAAATTAAATTAAAAA
TAAACAAGCAGTTCATTAAAGTTACGAACAATTCGACGCATCAGTTATCA
TGCGAGTTTGCGCTTTTGCCCTCTAGATTTCATTCGCCTCTCATAAATTA
AGAGAAAAATTTACCTATGCTTCACGTGTCAATGTAGCGGTCTAAATCAA
TTTTACGTGCATATGATAATATTTGAAAATTGTTATTAGTATTCTAAAAA
TTTCATTCTATACTTTTCTTTTTAATTATCAAAAACCTGGAATGCTAAAT
AAAATTTTCTTAATATTTTATTAATTGATTGAGTTAAAATACCGCTACAT
TAGCGTTAAATAATTTTAGAATGTTGCATTCTCTAAAAAGAAAACATCTT
ATAATATAATTTACAGGGAGTAGAGGCTCGGGCCGGACGCCACTAGACTG
GGACAACCGCATGAAAATAGCGCTGAGCGCGGCAAGAGGAATAGCGCACC
TCCACGTGTCAGGCAAGGTGGTCCACGGCAACATTAAATCCTCCAACATC
CTCCTCCGGCCGGACAACGACGCTTCCGTTTCCGACTTCGGGCTCAACCC
GCTCTTCGGGACTTCYACGCCGCCGAACCGGGTGGCGGGATACCGCGCGC
CGGAGGTGGTGGAGACCCGGAAGGTSACGTTCAAATCCGACGTGTACAGT
TTTGGCGTGTTGCTGCTGGAGCTGTTAACCGGGAAAGCGCCCAATCAGGC
GTCGCTGGGKGAGGAGGGGATCGATTTGCCACGGTGGGTGCAGTCGGTGG
TMMGGGAGGAGTGGACGGCGGAGGTCTTCGACGTGGAGCTGATGAGGTAC
CACAACATYGAGGAGGAGATGGTGCAGCTTTTACAGATCGCCATGGCGTG
CGTGTCCACGGTACCCGATCAAAGACCCGCAATGCAGGAGGTGGTCCGGA
TGATCGAAGATATGAACCGGGCCGAGACCGATGACGGGTTACGACAGTCG
TCCGATGATCCYTCGAAAGGATCGGACGGTCATACTCCTCCCGSTGGGTC
GAGGACCCCACCCAGCGTCACACCCACGCCTTAG back to topCoding sequence (CDS) from alignment at MDC012354.211:15945..19028- >MDP0000574604 ID=MDP0000574604; Name=MDP0000574604; organism=Malus x domestica; type=CDS; length=1968bp; location=Sequence derived from: MDC012354.211:15945..19028- (Malus x domestica ATGGCAGTGAGTTTTAGTGCTGCTACTGTGGTGGGTTTTGTTCTGATTAC GCTTCTGTCACTGAGTGGCGAGCGAGTCAACTCGGAGCCGATTCAGGACA AGCAAGCCCTCCTTGCGTTTCTGTCCCAGACTCCACATGCGAACCGGGTC CAATGGAACGCGTCGGTTTCGGCCTGCACCTGGGTCGGAATCAAATGCGA CGACAACCAGTCCTACGTCTACTCCCTCCGCCTCCCGGGTGTCGGCCTCG TCGGGCCCGTCCCGCCCAACACGCTCGGCCGGCTGACTCARCTTCGGGTT CTCAGTCTCCGTTCTAACCGACTCTCCGGTCCYATCCCTGCCGATTTCTC CAACCTAACTCTGCTCCGCAGTCTCTACCTCCAGGGGAATCAATTATCGG GTGAGTTTCCGACCGGGCTGACCCAGTTGGAGCGGTTGAACAGGCTCGTT CTCAGCTCCAACAACTTCACCGGTCCGATTCCATTTGCCGTCAGCAACCT GACCCACTTGACGGTACTCTTTSTTGAAAACAATGGTTTCTCAGGCAAGC TGCCGAACATCCAGGCTCCCAATCTAACCAACTTCAACGTTTCAAACAAC AAACTCAACGGCTCGATCCCGCAATCGCTATCAAACTTCCCCGCCTCTGC ATTCTCTGGAAACTTAGATCTTTGCGGTGGCCCGCTTAAGGCGTGCAACC CGTTTTTCCCTGCTCCCGCTCCGTCGCCCGAGTCCCCGCCCATAATCCCA GCCCACAAAAAGTCCAAGAAGCTCTCTACCGCCGCCATTGTCGCCATCGC CGTGGGGTCCGCTCTAGCCCTGTTCCTACTCCTCCTCGTACTCTTCCTCT GCCTCCGGAAACGGCGCCGACAGCAGCCRGCGAAGGCGCCAAAGCCACCT GTGGCCACACGGTCGGTAGAGACGGAGGCTGGAACATCATCCTCGAAAGA CGACATCACGGGCGGGTCCACCGAGGCGGAGAGAAACAAACTTGTGTTCT TCAACGGCGGAGTTTACAGCTTCGATTTGGAGGACTTGTTGAGAGCGTCG GCTGAGGTTTTGGGGAAGGGAAGCGTGGGGACGTCGTACAAGGCGGTGCT GGAGGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGACGTCGTGGTTA CGAAGAGAGAGTTCGAGATGACAATGGAGGTTCTGGGGAAGATTAAGCAC GACAATGTGGTGCCGCTGCGCGCGTTTTACTTCTCGAAGGACGAGAAATT GCTCGTCTCCGATTACATGTCCGCCGGCAGCTTGTCTGCCCTTCTCCACG GGAGTAGAGGCTCGGGCCGGACGCCACTAGACTGGGACAACCGCATGAAA ATAGCGCTGAGCGCGGCAAGAGGAATAGCGCACCTCCACGTGTCAGGCAA GGTGGTCCACGGCAACATTAAATCCTCCAACATCCTCCTCCGGCCGGACA ACGACGCTTCCGTTTCCGACTTCGGGCTCAACCCGCTCTTCGGGACTTCY ACGCCGCCGAACCGGGTGGCGGGATACCGCGCGCCGGAGGTGGTGGAGAC CCGGAAGGTSACGTTCAAATCCGACGTGTACAGTTTTGGCGTGTTGCTGC TGGAGCTGTTAACCGGGAAAGCGCCCAATCAGGCGTCGCTGGGKGAGGAG GGGATCGATTTGCCACGGTGGGTGCAGTCGGTGGTMMGGGAGGAGTGGAC GGCGGAGGTCTTCGACGTGGAGCTGATGAGGTACCACAACATYGAGGAGG AGATGGTGCAGCTTTTACAGATCGCCATGGCGTGCGTGTCCACGGTACCC GATCAAAGACCCGCAATGCAGGAGGTGGTCCGGATGATCGAAGATATGAA CCGGGCCGAGACCGATGACGGGTTACGACAGTCGTCCGATGATCCYTCGA AAGGATCGGACGGTCATACTCCTCCCGSTGGGTCGAGGACCCCACCCAGC GTCACACCCACGCCTTAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0006468 | protein phosphorylation |
|