MDP0000707824, MDP0000707824 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000707824
Unique Name	MDP0000707824
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1338

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr15	chromosome	chr15:5356716..5358053 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC023053.83	contig	MDC023053.83:10468..11805 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000707824_exon_1	MDP0000707824_exon_1	Malus x domestica	CDS

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 56..433 score: 1.3e
None	No IPR available	SEG	seg	seg	coord: 420..435 score
None	No IPR available	SEG	seg	seg	coord: 14..28 score
None	No IPR available	SEG	seg	seg	coord: 19..31 score

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA from alignment at chr15:5356716..5358053-
mRNA from alignment at MDC023053.83:10468..11805-
coding sequence from alignment at MDC023053.83:10468..11805-

mRNA sequence

>MDP0000707824 ID=MDP0000707824; Name=MDP0000707824; organism=Malus x domestica; type=mRNA; length=1338bp
ATGATGAACTCACGCCGTAAAACGGAAGGGATCGATGAAGCTCCAAATGA
CATAGAAAACCCCTACGATCCATTACTCGAGGACTTGCGTAACTTGTTTA
CCCTGTCCCCCTACGATCCATTACAGGAGGAGTTGGACTTGCTTACCCTG
TCCCCTTACCTGTGTATCTACAGAGTTCCTGAGCGACTACGGCAGGGAAA
TGAGAAAGCATATACACCTCAAGTAGTCTCTATAGGCCCACTTCACCATG
GCGAGGAACACTTAAAAGGCATGGAGGAGCACAAAAAAAGGTACCTGCTA
GATTTTCTAAGTCGAACCAGGGTAAGCTTCTACGATTGTATAAAAATGAT
AAAGATCCAAGAGGGAAAGTTGCGAGGTTGTTATGCAGAACCCATTGAGC
TTGGCAGTGATGAATTTGTAAGAATTGTTTTACTGGATGCCGCCTTCGTC
ATTGAGTTCTTATTGAGATACTATTCCGTAAATTTTCTTGGCCAAGCTGA
TGACACCGTGACCAAGCCAATGATGATGTGGGATGTGCGTCCAGACTTCT
TGTTGCTTGAAAATCAGCTGCCATTCTTCATTCTTCAGGTTCTTTTCAAC
ACACTTTTTTCTTCTGCAGATCAGCAGCCTTCGTTACTTGAAATTTCCTA
CTTTTCGTTACAAAGGGAAATCGATAGTAAGCGAAAAGAAGAGATTTTTG
GCGAAATATGTTCTTCTGGAGAAGAAGTACAACATTTTGTTGATCTGATA
AGAATTCTATACCGACCGTTGAAATCAAAAACTGGAGGGGAGCTTAAAGG
CACAGCAGTACCCAACGTGACAGAGCTAGTCCAGGCTGGAGTCGAGTTTA
AGGTAGGAAAAGGCAGCAGCTTATTTGACATAAACTTCTCGTGTGGGACC
CTCAAAATTCCAAAGTTAACAGTATGCGATACCACAGATCTGAAACTCAA
AAATCTCCTTGCTTTTGAACTATGCCGTCACAGAGAAACAAATTACCTAA
CTAATTATGTCTTCCTCATGAAGCGTCTCGCGAAAACCCCAAAGGATGTG
GAATTGCTTGTTGAGTATGGAATTATTGATAATTGGCTAGGTGATGCCAA
GAAGATATCTACTTTGCTTCTTGACTTTGACACTGGGGTCGTGGGTAATG
ACTACTATTATGCTAGTCTTTGTAAGGACCTGAACGACTACTGCAGATCT
CGCAGGCACAAATGGATGACAAATTTGAGACGAAATTATTTTAACACGCC
TTGGAGGATTATTTCTATTGTTGCAGCTGTTATTCTCCTCATACTCACTT
CCATACAAACTGTGTGCTCTATTATATCTATTGCTTAA

mRNA from alignment at chr15:5356716..5358053-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000707824 ID=MDP0000707824; Name=MDP0000707824; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr15:5356716..5358053- (Malus x domestica

mRNA from alignment at MDC023053.83:10468..11805-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000707824 ID=MDP0000707824; Name=MDP0000707824; organism=Malus x domestica; type=mRNA; length=1338bp; location=Sequence derived from: MDC023053.83:10468..11805- (Malus x domestica
ATGATGAACTCACGCCGTAAAACGGAAGGGATCGATGAAGCTCCAAATGA
CATAGAAAACCCCTACGATCCATTACTCGAGGACTTGCGTAACTTGTTTA
CCCTGTCCCCCTACGATCCATTACAGGAGGAGTTGGACTTGCTTACCCTG
TCCCCTTACCTGTGTATCTACAGAGTTCCTGAGCGACTACGGCAGGGAAA
TGAGAAAGCATATACACCTCAAGTAGTCTCTATAGGCCCACTTCACCATG
GCGAGGAACACTTAAAAGGCATGGAGGAGCACAAAAAAAGGTACCTGCTA
GATTTTCTAAGTCGAACCAGGGTAAGCTTCTACGATTGTATAAAAATGAT
AAAGATCCAAGAGGGAAAGTTGCGAGGTTGTTATGCAGAACCCATTGAGC
TTGGCAGTGATGAATTTGTAAGAATTGTTTTACTGGATGCCGCCTTCGTC
ATTGAGTTCTTATTGAGATACTATTCCGTAAATTTTCTTGGCCAAGCTGA
TGACACCGTGACCAAGCCAATGATGATGTGGGATGTGCGTCCAGACTTCT
TGTTGCTTGAAAATCAGCTGCCATTCTTCATTCTTCAGGTTCTTTTCAAC
ACACTTTTTTCTTCTGCAGATCAGCAGCCTTCGTTACTTGAAATTTCCTA
CTTTTCGTTACAAAGGGAAATCGATAGTAAGCGAAAAGAAGAGATTTTTG
GCGAAATATGTTCTTCTGGAGAAGAAGTACAACATTTTGTTGATCTGATA
AGAATTCTATACCGACCGTTGAAATCAAAAACTGGAGGGGAGCTTAAAGG
CACAGCAGTACCCAACGTGACAGAGCTAGTCCAGGCTGGAGTCGAGTTTA
AGGTAGGAAAAGGCAGCAGCTTATTTGACATAAACTTCTCGTGTGGGACC
CTCAAAATTCCAAAGTTAACAGTATGCGATACCACAGATCTGAAACTCAA
AAATCTCCTTGCTTTTGAACTATGCCGTCACAGAGAAACAAATTACCTAA
CTAATTATGTCTTCCTCATGAAGCGTCTCGCGAAAACCCCAAAGGATGTG
GAATTGCTTGTTGAGTATGGAATTATTGATAATTGGCTAGGTGATGCCAA
GAAGATATCTACTTTGCTTCTTGACTTTGACACTGGGGTCGTGGGTAATG
ACTACTATTATGCTAGTCTTTGTAAGGACCTGAACGACTACTGCAGATCT
CGCAGGCACAAATGGATGACAAATTTGAGACGAAATTATTTTAACACGCC
TTGGAGGATTATTTCTATTGTTGCAGCTGTTATTCTCCTCATACTCACTT
CCATACAAACTGTGTGCTCTATTATATCTATTGCTTAA

Coding sequence (CDS) from alignment at MDC023053.83:10468..11805-

>MDP0000707824 ID=MDP0000707824; Name=MDP0000707824; organism=Malus x domestica; type=CDS; length=1338bp; location=Sequence derived from: MDC023053.83:10468..11805- (Malus x domestica
ATGATGAACTCACGCCGTAAAACGGAAGGGATCGATGAAGCTCCAAATGA
CATAGAAAACCCCTACGATCCATTACTCGAGGACTTGCGTAACTTGTTTA
CCCTGTCCCCCTACGATCCATTACAGGAGGAGTTGGACTTGCTTACCCTG
TCCCCTTACCTGTGTATCTACAGAGTTCCTGAGCGACTACGGCAGGGAAA
TGAGAAAGCATATACACCTCAAGTAGTCTCTATAGGCCCACTTCACCATG
GCGAGGAACACTTAAAAGGCATGGAGGAGCACAAAAAAAGGTACCTGCTA
GATTTTCTAAGTCGAACCAGGGTAAGCTTCTACGATTGTATAAAAATGAT
AAAGATCCAAGAGGGAAAGTTGCGAGGTTGTTATGCAGAACCCATTGAGC
TTGGCAGTGATGAATTTGTAAGAATTGTTTTACTGGATGCCGCCTTCGTC
ATTGAGTTCTTATTGAGATACTATTCCGTAAATTTTCTTGGCCAAGCTGA
TGACACCGTGACCAAGCCAATGATGATGTGGGATGTGCGTCCAGACTTCT
TGTTGCTTGAAAATCAGCTGCCATTCTTCATTCTTCAGGTTCTTTTCAAC
ACACTTTTTTCTTCTGCAGATCAGCAGCCTTCGTTACTTGAAATTTCCTA
CTTTTCGTTACAAAGGGAAATCGATAGTAAGCGAAAAGAAGAGATTTTTG
GCGAAATATGTTCTTCTGGAGAAGAAGTACAACATTTTGTTGATCTGATA
AGAATTCTATACCGACCGTTGAAATCAAAAACTGGAGGGGAGCTTAAAGG
CACAGCAGTACCCAACGTGACAGAGCTAGTCCAGGCTGGAGTCGAGTTTA
AGGTAGGAAAAGGCAGCAGCTTATTTGACATAAACTTCTCGTGTGGGACC
CTCAAAATTCCAAAGTTAACAGTATGCGATACCACAGATCTGAAACTCAA
AAATCTCCTTGCTTTTGAACTATGCCGTCACAGAGAAACAAATTACCTAA
CTAATTATGTCTTCCTCATGAAGCGTCTCGCGAAAACCCCAAAGGATGTG
GAATTGCTTGTTGAGTATGGAATTATTGATAATTGGCTAGGTGATGCCAA
GAAGATATCTACTTTGCTTCTTGACTTTGACACTGGGGTCGTGGGTAATG
ACTACTATTATGCTAGTCTTTGTAAGGACCTGAACGACTACTGCAGATCT
CGCAGGCACAAATGGATGACAAATTTGAGACGAAATTATTTTAACACGCC
TTGGAGGATTATTTCTATTGTTGCAGCTGTTATTCTCCTCATACTCACTT
CCATACAAACTGTGTGCTCTATTATATCTATTGCTTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln