MDP0000734600, MDP0000734600 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000734600
Unique NameMDP0000734600
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1711
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000734600_exon_1MDP0000734600_exon_1Malus x domesticaCDS
MDP0000734600_exon_2MDP0000734600_exon_2Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000734600MDP0000734600Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 232..518
score: 4.2e
IPR006501Pectinesterase inhibitorGENE3D1.20.140.40no descriptioncoord: 28..186
score: 2.8
IPR006501Pectinesterase inhibitorPFAMPF04043PMEIcoord: 27..182
score: 2.6
IPR006501Pectinesterase inhibitorSMARTSM00856Plant invertase/pectin methylesterase inhibicoord: 25..182
score: 2
IPR006501Pectinesterase inhibitorTIGRFAMsTIGR01614PME_inhib: pectinesterase inhibitor domaincoord: 6..186
score: 3.6
IPR006501Pectinesterase inhibitorSUPERFAMILY101148Plant invertase/pectin methylesterase inhibitorcoord: 27..189
score: 6.6
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 224..533
score: 1.1e
IPR012334Pectin lyase foldGENE3D2.160.20.10no descriptioncoord: 229..532
score: 6.9e
IPR018040Pectinesterase, active sitePROSITEPS00503PECTINESTERASE_2coord: 375..384
score
IPR018040Pectinesterase, active sitePROSITEPS00800PECTINESTERASE_1coord: 256..275
score
NoneNo IPR availablePANTHERPTHR22931FAMILY NOT NAMEDcoord: 23..483
score: 2.2
NoneNo IPR availablePANTHERPTHR22931:SF5METHYLESTERASE INHIBITOR-RELATEDcoord: 23..483
score: 2.2
NoneNo IPR availableSEGsegsegcoord: 7..11
score
NoneNo IPR availableSEGsegsegcoord: 23..37
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000734600 ID=MDP0000734600; Name=MDP0000734600; organism=Malus x domestica; type=mRNA; length=1711bp
ATGGCCTTGGCCAATTTTTTGCTTCTCCTACTTTCAATTGCATGTTGTTC
TTATGGGGTTACTTCCTCCCATTCCATTCAATCCATGGTTACACAAACTT
GCACTGATATCGAAGACCGGAATTCGTGCCTTGCGAATGTGCAAGCCGAG
CTCCAAAAAACGGGGCCTCAAATTCAAGATTCGGTGTCGATCATAACTGC
CGCTCTTAGGCACACGCTCAATGAAACAAAAAATGCAATCCAAATGATCA
CAAAGTTCAACTCTTTGTCCATAAGTTACAGGGAGAGTGTAGCAATTGAG
GACTGCAAGGAGCTCCTGGACTACTCYGTCTCCGAGTTGGCTTGGTCTCT
AGGCGAAATGATCAAAATCCGTGGCGGCGACACAAATGTTCACTACGAAG
GAGACTTAAAATCTTGGCTTAGTGCTGCCCTGAGTAACCAAGATACCTGC
CTTGAGGGTTTTGAAGGAACCGACCGACGCCTCGAAAGTTTCGTTAGGGG
AAGTTTGAAGCAAGTGACGCAGCTCATTGGTAATGTTCTTGCCTTGTACA
CTCAACTATACAGCTTGCCCTCTCCTCCTAGGGATCATGGTCCCCCGATG
AATAAAAGTTCGTCAGGGGATGATTTCCCGGCGTGGATGAGTGAGGATGA
TCAAGCGCTGGTTAAATCGAATCCAAAATCGGGTGCGAAGCATGCTGTTG
TAGCAGCAGATGGGAGTGGACAGTACCGTACGATCACAGAAGCTGTTAAC
GAAGCTCCAAACTACAGCCCTAGCAGGTACGTTATATATGTGAAGAAGGG
AATATATAAGGAAAACATCGATCTGAAGAAGAAGAAAACCAATATTATGT
TCGTTGGGGATGGGATCGGACAAACTATCGTCACCGGTAACCGGAATTTC
ATGCAAGGATGGACGACGTTTAGAACTGCAACAGTTGGTAAGTTGATGGT
TTTTCACGTTCAGTGCATGCATTTTTCACACATTTTTACTAATAGTCCAC
GTAAATTTACACCTTCTCATGAATGCCATGTTTGATACAGCGGTATCCGG
GAAGGGATTCATAGCAAAAGAGATGACAATTCGCAACACCGCCGGCCCTC
AGAACCACCAAGGCGTGGCGCTAAGAGTCGACTCCGACCAGTCGGCCTTC
TTCCGGTGCAGCATTGAGGGTAACCAAGACACCCTCTATGCTCACTCCCT
CCGGCAGTTCTACCGGGAATGCAGCATCTACGGCACCATAGACTTCATAT
TTGGCAACGGAGCTGCAGTCCTCCAAAACTGCAAAATCTACACAAGGGTC
CCACTCCCGCTACAAAAGGTCACCATCACCGCCCAAGGTAGGAAAAACCC
GCATCAAAACACCGGGTTTACGATCCAGGACAGTTTTGTTCTGGCCACCC
AGCCAACTTATTTGGGCAGGCCGTGGAAGGAATATTCCAGGACTGTTTAT
ATGAACACTTACATGAGCGGGCTGGTCCAGCCCAGAGGGTGGCTCGAGTG
GTATGGGGATTTTGCTTTGAGCACCTTGTGGTATGGTGAGTATAGAAATT
ATGGGCCGGGTGCGGGTCTAGCGGGTCGGGTCAAATGGCCTGGTTACCAT
ATACTCAAGGATGCCGCCGCCGCGAGCTTCTTCACCGTTGGGAGGTTTAT
TGACGGGAGGGCTTGGTTGCCGTCGACAGGTGTCAAGTTTACAGCGGGTT
TGAGTAATTAA
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protein sequence of MDP0000734600

>MDP0000734600 ID=MDP0000734600; Name=MDP0000734600; organism=Malus x domestica; type=polypeptide; length=536bp
MALANFLLLLLSIACCSYGVTSSHSIQSMVTQTCTDIEDRNSCLANVQAE
LQKTGPQIQDSVSIITAALRHTLNETKNAIQMITKFNSLSISYRESVAIE
DCKELLDYSVSELAWSLGEMIKIRGGDTNVHYEGDLKSWLSAALSNQDTC
LEGFEGTDRRLESFVRGSLKQVTQLIGNVLALYTQLYSLPSPPRDHGPPM
NKSSSGDDFPAWMSEDDQALVKSNPKSGAKHAVVAADGSGQYRTITEAVN
EAPNYSPSRYVIYVKKGIYKENIDLKKKKTNIMFVGDGIGQTIVTGNRNF
MQGWTTFRTATVAVSGKGFIAKEMTIRNTAGPQNHQGVALRVDSDQSAFF
RCSIEGNQDTLYAHSLRQFYRECSIYGTIDFIFGNGAAVLQNCKIYTRVP
LPLQKVTITAQGRKNPHQNTGFTIQDSFVLATQPTYLGRPWKEYSRTVYM
NTYMSGLVQPRGWLEWYGDFALSTLWYGEYRNYGPGAGLAGRVKWPGYHI
LKDAAAASFFTVGRFIDGRAWLPSTGVKFTAGLSN*
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mRNA from alignment at chr4:19353764..19355474+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000734600 ID=MDP0000734600; Name=MDP0000734600; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr4:19353764..19355474+ (Malus x domestica
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mRNA from alignment at MDC004407.197:33377..35087+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000734600 ID=MDP0000734600; Name=MDP0000734600; organism=Malus x domestica; type=mRNA; length=1711bp; location=Sequence derived from: MDC004407.197:33377..35087+ (Malus x domestica
ATGGCCTTGGCCAATTTTTTGCTTCTCCTACTTTCAATTGCATGTTGTTC
TTATGGGGTTACTTCCTCCCATTCCATTCAATCCATGGTTACACAAACTT
GCACTGATATCGAAGACCGGAATTCGTGCCTTGCGAATGTGCAAGCCGAG
CTCCAAAAAACGGGGCCTCAAATTCAAGATTCGGTGTCGATCATAACTGC
CGCTCTTAGGCACACGCTCAATGAAACAAAAAATGCAATCCAAATGATCA
CAAAGTTCAACTCTTTGTCCATAAGTTACAGGGAGAGTGTAGCAATTGAG
GACTGCAAGGAGCTCCTGGACTACTCYGTCTCCGAGTTGGCTTGGTCTCT
AGGCGAAATGATCAAAATCCGTGGCGGCGACACAAATGTTCACTACGAAG
GAGACTTAAAATCTTGGCTTAGTGCTGCCCTGAGTAACCAAGATACCTGC
CTTGAGGGTTTTGAAGGAACCGACCGACGCCTCGAAAGTTTCGTTAGGGG
AAGTTTGAAGCAAGTGACGCAGCTCATTGGTAATGTTCTTGCCTTGTACA
CTCAACTATACAGCTTGCCCTCTCCTCCTAGGGATCATGGTCCCCCGATG
AATAAAAGTTCGTCAGGGGATGATTTCCCGGCGTGGATGAGTGAGGATGA
TCAAGCGCTGGTTAAATCGAATCCAAAATCGGGTGCGAAGCATGCTGTTG
TAGCAGCAGATGGGAGTGGACAGTACCGTACGATCACAGAAGCTGTTAAC
GAAGCTCCAAACTACAGCCCTAGCAGGTACGTTATATATGTGAAGAAGGG
AATATATAAGGAAAACATCGATCTGAAGAAGAAGAAAACCAATATTATGT
TCGTTGGGGATGGGATCGGACAAACTATCGTCACCGGTAACCGGAATTTC
ATGCAAGGATGGACGACGTTTAGAACTGCAACAGTTGGTAAGTTGATGGT
TTTTCACGTTCAGTGCATGCATTTTTCACACATTTTTACTAATAGTCCAC
GTAAATTTACACCTTCTCATGAATGCCATGTTTGATACAGCGGTATCCGG
GAAGGGATTCATAGCAAAAGAGATGACAATTCGCAACACCGCCGGCCCTC
AGAACCACCAAGGCGTGGCGCTAAGAGTCGACTCCGACCAGTCGGCCTTC
TTCCGGTGCAGCATTGAGGGTAACCAAGACACCCTCTATGCTCACTCCCT
CCGGCAGTTCTACCGGGAATGCAGCATCTACGGCACCATAGACTTCATAT
TTGGCAACGGAGCTGCAGTCCTCCAAAACTGCAAAATCTACACAAGGGTC
CCACTCCCGCTACAAAAGGTCACCATCACCGCCCAAGGTAGGAAAAACCC
GCATCAAAACACCGGGTTTACGATCCAGGACAGTTTTGTTCTGGCCACCC
AGCCAACTTATTTGGGCAGGCCGTGGAAGGAATATTCCAGGACTGTTTAT
ATGAACACTTACATGAGCGGGCTGGTCCAGCCCAGAGGGTGGCTCGAGTG
GTATGGGGATTTTGCTTTGAGCACCTTGTGGTATGGTGAGTATAGAAATT
ATGGGCCGGGTGCGGGTCTAGCGGGTCGGGTCAAATGGCCTGGTTACCAT
ATACTCAAGGATGCCGCCGCCGCGAGCTTCTTCACCGTTGGGAGGTTTAT
TGACGGGAGGGCTTGGTTGCCGTCGACAGGTGTCAAGTTTACAGCGGGTT
TGAGTAATTAA
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Coding sequence (CDS) from alignment at MDC004407.197:33377..35087+

>MDP0000734600 ID=MDP0000734600; Name=MDP0000734600; organism=Malus x domestica; type=CDS; length=1608bp; location=Sequence derived from: MDC004407.197:33377..35087+ (Malus x domestica
ATGGCCTTGGCCAATTTTTTGCTTCTCCTACTTTCAATTGCATGTTGTTC
TTATGGGGTTACTTCCTCCCATTCCATTCAATCCATGGTTACACAAACTT
GCACTGATATCGAAGACCGGAATTCGTGCCTTGCGAATGTGCAAGCCGAG
CTCCAAAAAACGGGGCCTCAAATTCAAGATTCGGTGTCGATCATAACTGC
CGCTCTTAGGCACACGCTCAATGAAACAAAAAATGCAATCCAAATGATCA
CAAAGTTCAACTCTTTGTCCATAAGTTACAGGGAGAGTGTAGCAATTGAG
GACTGCAAGGAGCTCCTGGACTACTCYGTCTCCGAGTTGGCTTGGTCTCT
AGGCGAAATGATCAAAATCCGTGGCGGCGACACAAATGTTCACTACGAAG
GAGACTTAAAATCTTGGCTTAGTGCTGCCCTGAGTAACCAAGATACCTGC
CTTGAGGGTTTTGAAGGAACCGACCGACGCCTCGAAAGTTTCGTTAGGGG
AAGTTTGAAGCAAGTGACGCAGCTCATTGGTAATGTTCTTGCCTTGTACA
CTCAACTATACAGCTTGCCCTCTCCTCCTAGGGATCATGGTCCCCCGATG
AATAAAAGTTCGTCAGGGGATGATTTCCCGGCGTGGATGAGTGAGGATGA
TCAAGCGCTGGTTAAATCGAATCCAAAATCGGGTGCGAAGCATGCTGTTG
TAGCAGCAGATGGGAGTGGACAGTACCGTACGATCACAGAAGCTGTTAAC
GAAGCTCCAAACTACAGCCCTAGCAGGTACGTTATATATGTGAAGAAGGG
AATATATAAGGAAAACATCGATCTGAAGAAGAAGAAAACCAATATTATGT
TCGTTGGGGATGGGATCGGACAAACTATCGTCACCGGTAACCGGAATTTC
ATGCAAGGATGGACGACGTTTAGAACTGCAACAGTTGCGGTATCCGGGAA
GGGATTCATAGCAAAAGAGATGACAATTCGCAACACCGCCGGCCCTCAGA
ACCACCAAGGCGTGGCGCTAAGAGTCGACTCCGACCAGTCGGCCTTCTTC
CGGTGCAGCATTGAGGGTAACCAAGACACCCTCTATGCTCACTCCCTCCG
GCAGTTCTACCGGGAATGCAGCATCTACGGCACCATAGACTTCATATTTG
GCAACGGAGCTGCAGTCCTCCAAAACTGCAAAATCTACACAAGGGTCCCA
CTCCCGCTACAAAAGGTCACCATCACCGCCCAAGGTAGGAAAAACCCGCA
TCAAAACACCGGGTTTACGATCCAGGACAGTTTTGTTCTGGCCACCCAGC
CAACTTATTTGGGCAGGCCGTGGAAGGAATATTCCAGGACTGTTTATATG
AACACTTACATGAGCGGGCTGGTCCAGCCCAGAGGGTGGCTCGAGTGGTA
TGGGGATTTTGCTTTGAGCACCTTGTGGTATGGTGAGTATAGAAATTATG
GGCCGGGTGCGGGTCTAGCGGGTCGGGTCAAATGGCCTGGTTACCATATA
CTCAAGGATGCCGCCGCCGCGAGCTTCTTCACCGTTGGGAGGTTTATTGA
CGGGAGGGCTTGGTTGCCGTCGACAGGTGTCAAGTTTACAGCGGGTTTGA
GTAATTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
IPR006501Pectinesterase_inhib_dom
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR018040Pectinesterase_Tyr_AS
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
GO:0004857enzyme inhibitor activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification