MDP0000771647, MDP0000771647 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000771647
Unique NameMDP0000771647
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1592
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000771647_exon_5MDP0000771647_exon_5Malus x domesticaCDS
MDP0000771647_exon_4MDP0000771647_exon_4Malus x domesticaCDS
MDP0000771647_exon_3MDP0000771647_exon_3Malus x domesticaCDS
MDP0000771647_exon_2MDP0000771647_exon_2Malus x domesticaCDS
MDP0000771647_exon_1MDP0000771647_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000771647MDP0000771647Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001087Lipase, GDSLPFAMPF00657Lipase_GDSLcoord: 34..362
score: 1.3
NoneNo IPR availablePANTHERPTHR22835FAMILY NOT NAMEDcoord: 31..381
score: 3.9
NoneNo IPR availablePANTHERPTHR22835:SF39LATERAL SIGNALING TARGET PROTEIN 2coord: 31..381
score: 3.9
NoneNo IPR availableSEGsegsegcoord: 35..48
score
NoneNo IPR availableSEGsegsegcoord: 27..38
score: NAcoord: 42..61
score
NoneNo IPR availableSEGsegsegcoord: 5..19
score: NAcoord: 35..42
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000771647 ID=MDP0000771647; Name=MDP0000771647; organism=Malus x domestica; type=mRNA; length=1592bp
ATGGAGTTTTGGAAACTGCTTCTGGCATCTGGGTTCTTCTTGGCTTTCTG
GGTTTTGGCTGTGGGAGGCCAGAGCTTACCACCCTGTTCTTTTCCGGCAA
TTTACAACTTCGGGGACTCGAATTCCGACACCGGCGGCATATCGGCCGCG
TTCGAGCCAATCAAAGCTCCTTACGGCGAGGCATTCTTCCACAAGCCGGC
CGGGAGGGACGCCGATGGCCGCCTTATCATAGACTTCTTAGGTAACAACT
AAATTAACGGCAAATACTTCTCGCTAATCTCTAATCATAGTATGATGCGT
GTGCATATTTTTTAATTTTTCGATATATTTATTTTACATACGCGTCGAAC
TGTGATTTTGTGCAGCTGAGCGCCTGAAGTTGCCATACTTGAGTGCATAT
TTGAACTCACTTGGAACAAATTACCGGCACGGTGCGAATTTCGCCACCGG
AGGATCCACCATCAGGCGGCCGAACGAAACCATTTTCCAGTACGGCATTA
GCCCTTTCTCCCTCGATATGCAAACGGCGCAGTTCCTGCAGTTCAAAGCT
CGCACTGCCGATCTCTATAGCCAAGGTTCAATCTTTTCAGTGCCGACAAC
TGCTTCAAGTTTCAATCCTTATTAATTGGCTGTTGTAAATCTGAACTGTT
TCTGATGTCCTCCAGCCAAGAACCCTTCTGAGAGAAGCGCTCTGCCGGAT
CCTCGGGAGTTCGCAGAGGCTCTGTACACCTTTGATATCGGGCAAAACGA
TCTTTCCATGGGTTTTCGGAAGCTCAGTTTCGACCAGTTTCGTGCAGAAC
TGCCGGACATTGTCAACCAGTTAGCCATAGCAGTCCATGTAAGTAGCACC
ATGGCAGTCGCTTAAGATTAAGAAACTTAATTTGGTCAGTTTGGAATTGC
TTATGTAGGAAGCACTTCTCCAAGAAGTGCTCATCGCATCTTCATTAAAC
AAACATGTCTGTAACATTGGTTGTGATTGACAAACTTCAGCGGATATATG
AAGAAGGGGGGAGGACRTTTTGGATACACAACACAGGTCCTGTTGGTTGC
TTGCCGGTACARTTATTCTACAACCTGAATCCRCCRSCCGGTTATCTCGA
CGACCACGGCTGCGTCAAGGCCCAAAACGACATCGCCGTAGAGTTCAACA
CGCAGCTCAGAGACARAGTCATCAARCTAAGAGCTGAGCTGCCACAAGCC
GCAATCACATACGTCGATGTCTACGCCGCCAAGTACGGACTCATCGGCAC
TGCAAAGACTGAAGGTACCCAATTTGTTCAACTTCCTTACCGCTAATTAC
GYTATTTAGATACTGATTAACGTTGCTATCTTTGTTTACAGGGTTTGCTG
ATCCGATGAAGGTTTGTTGCGGTTATCATGTGGGATACGACCACATCTGG
TGCGGGAACAAGGGAAGCGTAAATGGAAGCGATGTCTACGGTGCTTCTTG
TCAAAACCCGTCGGCTTTCATTAGCTGGGATGGAGTTCACTACACCGAGG
GAGCGAACCAGTGGGTTGCTAATCGTATACTCAATGGCTCGCCATCGTCG
AACCCGGCAATTCCTATTACTCAAGCTTGTCATAGGCATTGA
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protein sequence of MDP0000771647

>MDP0000771647 ID=MDP0000771647; Name=MDP0000771647; organism=Malus x domestica; type=polypeptide; length=383bp
MEFWKLLLASGFFLAFWVLAVGGQSLPPCSFPAIYNFGDSNSDTGGISAA
FEPIKAPYGEAFFHKPAGRDADGRLIIDFLAERLKLPYLSAYLNSLGTNY
RHGANFATGGSTIRRPNETIFQYGISPFSLDMQTAQFLQFKARTADLYSQ
AKNPSERSALPDPREFAEALYTFDIGQNDLSMGFRKLSFDQFRAELPDIV
NQLAIAVHRIYEEGGRTFWIHNTGPVGCLPVQLFYNLNPPXGYLDDHGCV
KAQNDIAVEFNTQLRDXVIKLRAELPQAAITYVDVYAAKYGLIGTAKTEG
FADPMKVCCGYHVGYDHIWCGNKGSVNGSDVYGASCQNPSAFISWDGVHY
TEGANQWVANRILNGSPSSNPAIPITQACHRH*
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mRNA from alignment at chr9:1360489..1362080-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000771647 ID=MDP0000771647; Name=MDP0000771647; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr9:1360489..1362080- (Malus x domestica
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mRNA from alignment at MDC022310.121:8927..10518-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000771647 ID=MDP0000771647; Name=MDP0000771647; organism=Malus x domestica; type=mRNA; length=1592bp; location=Sequence derived from: MDC022310.121:8927..10518- (Malus x domestica
ATGGAGTTTTGGAAACTGCTTCTGGCATCTGGGTTCTTCTTGGCTTTCTG
GGTTTTGGCTGTGGGAGGCCAGAGCTTACCACCCTGTTCTTTTCCGGCAA
TTTACAACTTCGGGGACTCGAATTCCGACACCGGCGGCATATCGGCCGCG
TTCGAGCCAATCAAAGCTCCTTACGGCGAGGCATTCTTCCACAAGCCGGC
CGGGAGGGACGCCGATGGCCGCCTTATCATAGACTTCTTAGGTAACAACT
AAATTAACGGCAAATACTTCTCGCTAATCTCTAATCATAGTATGATGCGT
GTGCATATTTTTTAATTTTTCGATATATTTATTTTACATACGCGTCGAAC
TGTGATTTTGTGCAGCTGAGCGCCTGAAGTTGCCATACTTGAGTGCATAT
TTGAACTCACTTGGAACAAATTACCGGCACGGTGCGAATTTCGCCACCGG
AGGATCCACCATCAGGCGGCCGAACGAAACCATTTTCCAGTACGGCATTA
GCCCTTTCTCCCTCGATATGCAAACGGCGCAGTTCCTGCAGTTCAAAGCT
CGCACTGCCGATCTCTATAGCCAAGGTTCAATCTTTTCAGTGCCGACAAC
TGCTTCAAGTTTCAATCCTTATTAATTGGCTGTTGTAAATCTGAACTGTT
TCTGATGTCCTCCAGCCAAGAACCCTTCTGAGAGAAGCGCTCTGCCGGAT
CCTCGGGAGTTCGCAGAGGCTCTGTACACCTTTGATATCGGGCAAAACGA
TCTTTCCATGGGTTTTCGGAAGCTCAGTTTCGACCAGTTTCGTGCAGAAC
TGCCGGACATTGTCAACCAGTTAGCCATAGCAGTCCATGTAAGTAGCACC
ATGGCAGTCGCTTAAGATTAAGAAACTTAATTTGGTCAGTTTGGAATTGC
TTATGTAGGAAGCACTTCTCCAAGAAGTGCTCATCGCATCTTCATTAAAC
AAACATGTCTGTAACATTGGTTGTGATTGACAAACTTCAGCGGATATATG
AAGAAGGGGGGAGGACRTTTTGGATACACAACACAGGTCCTGTTGGTTGC
TTGCCGGTACARTTATTCTACAACCTGAATCCRCCRSCCGGTTATCTCGA
CGACCACGGCTGCGTCAAGGCCCAAAACGACATCGCCGTAGAGTTCAACA
CGCAGCTCAGAGACARAGTCATCAARCTAAGAGCTGAGCTGCCACAAGCC
GCAATCACATACGTCGATGTCTACGCCGCCAAGTACGGACTCATCGGCAC
TGCAAAGACTGAAGGTACCCAATTTGTTCAACTTCCTTACCGCTAATTAC
GYTATTTAGATACTGATTAACGTTGCTATCTTTGTTTACAGGGTTTGCTG
ATCCGATGAAGGTTTGTTGCGGTTATCATGTGGGATACGACCACATCTGG
TGCGGGAACAAGGGAAGCGTAAATGGAAGCGATGTCTACGGTGCTTCTTG
TCAAAACCCGTCGGCTTTCATTAGCTGGGATGGAGTTCACTACACCGAGG
GAGCGAACCAGTGGGTTGCTAATCGTATACTCAATGGCTCGCCATCGTCG
AACCCGGCAATTCCTATTACTCAAGCTTGTCATAGGCATTGA
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Coding sequence (CDS) from alignment at MDC022310.121:8927..10518-

>MDP0000771647 ID=MDP0000771647; Name=MDP0000771647; organism=Malus x domestica; type=CDS; length=1149bp; location=Sequence derived from: MDC022310.121:8927..10518- (Malus x domestica
ATGGAGTTTTGGAAACTGCTTCTGGCATCTGGGTTCTTCTTGGCTTTCTG
GGTTTTGGCTGTGGGAGGCCAGAGCTTACCACCCTGTTCTTTTCCGGCAA
TTTACAACTTCGGGGACTCGAATTCCGACACCGGCGGCATATCGGCCGCG
TTCGAGCCAATCAAAGCTCCTTACGGCGAGGCATTCTTCCACAAGCCGGC
CGGGAGGGACGCCGATGGCCGCCTTATCATAGACTTCTTAGCTGAGCGCC
TGAAGTTGCCATACTTGAGTGCATATTTGAACTCACTTGGAACAAATTAC
CGGCACGGTGCGAATTTCGCCACCGGAGGATCCACCATCAGGCGGCCGAA
CGAAACCATTTTCCAGTACGGCATTAGCCCTTTCTCCCTCGATATGCAAA
CGGCGCAGTTCCTGCAGTTCAAAGCTCGCACTGCCGATCTCTATAGCCAA
GCCAAGAACCCTTCTGAGAGAAGCGCTCTGCCGGATCCTCGGGAGTTCGC
AGAGGCTCTGTACACCTTTGATATCGGGCAAAACGATCTTTCCATGGGTT
TTCGGAAGCTCAGTTTCGACCAGTTTCGTGCAGAACTGCCGGACATTGTC
AACCAGTTAGCCATAGCAGTCCATCGGATATATGAAGAAGGGGGGAGGAC
RTTTTGGATACACAACACAGGTCCTGTTGGTTGCTTGCCGGTACARTTAT
TCTACAACCTGAATCCRCCRSCCGGTTATCTCGACGACCACGGCTGCGTC
AAGGCCCAAAACGACATCGCCGTAGAGTTCAACACGCAGCTCAGAGACAR
AGTCATCAARCTAAGAGCTGAGCTGCCACAAGCCGCAATCACATACGTCG
ATGTCTACGCCGCCAAGTACGGACTCATCGGCACTGCAAAGACTGAAGGG
TTTGCTGATCCGATGAAGGTTTGTTGCGGTTATCATGTGGGATACGACCA
CATCTGGTGCGGGAACAAGGGAAGCGTAAATGGAAGCGATGTCTACGGTG
CTTCTTGTCAAAACCCGTCGGCTTTCATTAGCTGGGATGGAGTTCACTAC
ACCGAGGGAGCGAACCAGTGGGTTGCTAATCGTATACTCAATGGCTCGCC
ATCGTCGAACCCGGCAATTCCTATTACTCAAGCTTGTCATAGGCATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001087GDSL
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process