MDP0000772278, MDP0000772278 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000772278
Unique NameMDP0000772278
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length2490
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000772278_exon_3MDP0000772278_exon_3Malus x domesticaCDS
MDP0000772278_exon_2MDP0000772278_exon_2Malus x domesticaCDS
MDP0000772278_exon_1MDP0000772278_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000772278MDP0000772278Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000719Protein kinase, catalytic domainPROFILEPS50011PROTEIN_KINASE_DOMcoord: 373..646
score: 25
IPR001245Serine-threonine/tyrosine-protein kinase catalytic domainPFAMPF07714Pkinase_Tyrcoord: 377..643
score: 7.3
IPR002290Serine/threonine- / dual-specificity protein kinase, catalytic domainSMARTSM00220Serine/Threonine protein kinases, catalyticcoord: 373..647
score: 1.9
IPR011009Protein kinase-like domainSUPERFAMILY56112Protein kinase-like (PK-like)coord: 350..643
score: 5.8
IPR013210Leucine-rich repeat-containing N-terminal, type 2PFAMPF08263LRRNT_2coord: 41..82
score: 9.9
IPR020635Tyrosine-protein kinase, catalytic domainSMARTSM00219Tyrosine kinase, catalytic domaincoord: 373..643
score: 2.9
NoneNo IPR availableGENE3D1.10.510.10no descriptioncoord: 448..652
score: 9
NoneNo IPR availableGENE3D3.30.200.20no descriptioncoord: 376..447
score: 1.9
NoneNo IPR availableGENE3D3.80.10.10no descriptioncoord: 41..229
score: 2.6
NoneNo IPR availablePANTHERPTHR24420FAMILY NOT NAMEDcoord: 1..648
score: 1.3e
NoneNo IPR availablePANTHERPTHR24420:SF823SUBFAMILY NOT NAMEDcoord: 1..648
score: 1.3e
NoneNo IPR availablePFAMPF13855LRR_8coord: 134..193
score: 4.7
NoneNo IPR availableSEGsegsegcoord: 248..268
score: NAcoord: 284..303
score
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 34..247
score: 2.8
NoneNo IPR availableSEGsegsegcoord: 55..66
score
NoneNo IPR availableSEGsegsegcoord: 26..40
score
NoneNo IPR availableSEGsegsegcoord: 1..19
score
NoneNo IPR availableSEGsegsegcoord: 1..34
score
NoneNo IPR availableSEGsegsegcoord: 3..14
score: NAcoord: 60..79
score
NoneNo IPR availableSEGsegsegcoord: 4..17
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000772278 ID=MDP0000772278; Name=MDP0000772278; organism=Malus x domestica; type=mRNA; length=2490bp
ATGGCTATGACTAGGCTTATGCGCGCACCAAACCCTACCCCAACATTTTT
TCTTACCCTCTTTGTTGGTTATGTATCATGCATGGCGGTTTTACCGTTTG
GTTCACCAATGGATACAACCACCGATGCCCTTTTGAAGTTCAAGAAAACG
TTGCAATTGGGAAACAACACCGAGGCTCTTAGAAATTGGGATCCTAACAA
AAACCCGTGTAATGGTAACAAGGCGAATTGGGTTGGCGTGCTTTGCTTTA
ATGGGAATGTCCGGGGATTGCAGCTCGAAAACTTGGGTTTACAGGGAAAG
CTGGATTTGGAGCCTCTCGCTCAGTTGCCTTATTTGAAAACCCTAAGCTT
CATGAATAACGTGTTGGATGGTCCATTGCCGGACCTTAAGAAWTTTAAAA
AGTTAAGGTCTTTGTATTTGTCCTACAATCATTTCTCTGGTGAGATTCCA
GCCGATGAATTTGAAGGTATGCATTTGTTGAGGAAATTGTATCTTGCAAA
CAATGAGTTTTCCGGCAAAATCCCGTCTTCCCTTACTACTTTGCCTAGGG
TTTTCGATGTGGGTCTTGAGGGGAACAAGTTTAGTGGCCAAATACCTGAT
TTTAAGCACAAGGCTTTGAAGAGGTTGAATGTATCTCAAAATGATTTGGA
GGGTCCAGTTCCAGAAAGCCTAAAAAAGATGGATCCAAGTAACTTTGCAG
GTAATTAATTAATATCGTTCATGCGTTAGTTTTGTTGCTATATTTGTTTG
ACTGATTAGTTTTGAATTGAAACTGAAATGTAGATGACTGATTCATTTTG
AATTCAAAGTGAAATTGCAACGGATGTGATCATCAAAATTTTCCCATTAG
GGTCATCATCCTTCATTTAAATCATCACCATTAACCATTTATGAATTTGG
ATCTGATTTTAACCAAAATGCAGGCAATGGAAAGCTATGTGGTTCGCCTC
TTCAGGGAGCATGCAGCCCCCCTCCTCCTCCTCCTTCTCCACCTGCTCCT
CCTCCTACAACTCCTGCCCCACCGCCTGAATGCACGGGGGATTCATGCGG
TGCGTCTAAGAAGCCGTCAGGTCTAAAAGTAGCCCTAATTGTGGTGAGTC
TATTACTTCTACTGGCCCTCATTGCTGCGATTTTCATGTTCCTCAACAAG
AGAAAGCAACGATCAGAATTAGACGGGACTGAATCATTGGACGAGTCCTC
CAATTATACGGCAGCTGCTGCAAGCAGCCAAATGGATGTTAAGTCGGTAG
AAACTAACCCACATCCAAAGAGAGCTGACCAGGGAAAGTTGTCATTTGTG
AGGGATGACAGACAGAGGTTTGATTTGCATGACCTTCTCAGAGCCTCGGC
TGAAATCTTGGGGAGCGGGAATTTTGGGGCTTCCTACAAGGCTTTGATCA
TGACTGATGTTGTGGTGGTCAAGAGGTATAAGCAGATGAACAATGTGGGA
AGAGAGGAGTTCCATGAGCACATGAGAAGGCTTGGAAGATTGACACACCA
AAACTTGTTGCCTCTGGTGGCCTATTATTATAGAAGGGAAGAGAAGCTCT
TGGTTTCTGACTTTGTGGAGAATGGTAGCTTGGCTTCTCATCTTCACGGT
GAGTTTTTTTTTTTTTTCTTGTGTCACAAGTTAGCTTAACATTAGGTCTC
CTTAATTATGTGCATGCTTGAATGAGTACTATTATGTTCCACCTACAATA
TTTACTGACTACATTTTTCATGACGTTTCTCTTAAGATTCAGTGGAATCC
ACGTTGCTGAGTGAGAGTGTGATCGTTAAAATATAGTACGAATTGATTTA
CTAATTCATAGTGAAATAACATCATGGTGGTAAATTTTTGTTTTCACAGG
CAATCATAATTCAGATATGCCCGTGCTTGATTGGCCAACACGTTTGAGAA
TAATCAAAGGCATAGCAAGGGGATTGACATACCTCTACAGCACACTCCCT
AGCTTGGTTGTACCCCATGGTCATCTGAAATCCTCTAATGTGCTTTTAGA
CGAAAACTTTGAGCCCCTACTGAACGACTATGCTCTACTCCCCGTGATCA
ACATGGAGCAAGCTCAACACCTGATGATGGCATACAAGTCACCCGAATAC
GCCCAGCACCGACGTATAACAAAGAAGACCGACCTATGGTGCTTCGGAAT
AATAATCTTGGAGGTGTTAACCGGAAAGTTCCCAGAGAACTACCTCAAGG
AAAGTTATGATAGTAAGGCGGATTTAGCAAATTGGGTCAATGGAATGATC
AAGGAAAAGAGAACAAGTGAGGTGTTTGATGTAGAAATGGGGAGAGTGGG
GAACAGTAGAGGAGAACTGTTAAAGCTCTTGAAGATTGGAGTGAGTTGTT
GTGAGGAGGATATTGAGAGAAGGCTGGATTTGAATGAAGTCGTTGAGAAG
ATTGAAGAATTGAACGAGGGAGAAAGCGATGGAGATTACCGATCAAGTGT
TTCTAGTGAAGGAGATGATTACCCTTCACAAGTGGTGTGA
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protein sequence of MDP0000772278

>MDP0000772278 ID=MDP0000772278; Name=MDP0000772278; organism=Malus x domestica; type=polypeptide; length=672bp
MAMTRLMRAPNPTPTFFLTLFVGYVSCMAVLPFGSPMDTTTDALLKFKKT
LQLGNNTEALRNWDPNKNPCNGNKANWVGVLCFNGNVRGLQLENLGLQGK
LDLEPLAQLPYLKTLSFMNNVLDGPLPDLKXFKKLRSLYLSYNHFSGEIP
ADEFEGMHLLRKLYLANNEFSGKIPSSLTTLPRVFDVGLEGNKFSGQIPD
FKHKALKRLNVSQNDLEGPVPESLKKMDPSNFAGNGKLCGSPLQGACSPP
PPPPSPPAPPPTTPAPPPECTGDSCGASKKPSGLKVALIVVSLLLLLALI
AAIFMFLNKRKQRSELDGTESLDESSNYTAAAASSQMDVKSVETNPHPKR
ADQGKLSFVRDDRQRFDLHDLLRASAEILGSGNFGASYKALIMTDVVVVK
RYKQMNNVGREEFHEHMRRLGRLTHQNLLPLVAYYYRREEKLLVSDFVEN
GSLASHLHGNHNSDMPVLDWPTRLRIIKGIARGLTYLYSTLPSLVVPHGH
LKSSNVLLDENFEPLLNDYALLPVINMEQAQHLMMAYKSPEYAQHRRITK
KTDLWCFGIIILEVLTGKFPENYLKESYDSKADLANWVNGMIKEKRTSEV
FDVEMGRVGNSRGELLKLLKIGVSCCEEDIERRLDLNEVVEKIEELNEGE
SDGDYRSSVSSEGDDYPSQVV*
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mRNA from alignment at chr9:13900932..13903421+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000772278 ID=MDP0000772278; Name=MDP0000772278; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr9:13900932..13903421+ (Malus x domestica
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mRNA from alignment at MDC023615.63:33024..35513+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000772278 ID=MDP0000772278; Name=MDP0000772278; organism=Malus x domestica; type=mRNA; length=2490bp; location=Sequence derived from: MDC023615.63:33024..35513+ (Malus x domestica
ATGGCTATGACTAGGCTTATGCGCGCACCAAACCCTACCCCAACATTTTT
TCTTACCCTCTTTGTTGGTTATGTATCATGCATGGCGGTTTTACCGTTTG
GTTCACCAATGGATACAACCACCGATGCCCTTTTGAAGTTCAAGAAAACG
TTGCAATTGGGAAACAACACCGAGGCTCTTAGAAATTGGGATCCTAACAA
AAACCCGTGTAATGGTAACAAGGCGAATTGGGTTGGCGTGCTTTGCTTTA
ATGGGAATGTCCGGGGATTGCAGCTCGAAAACTTGGGTTTACAGGGAAAG
CTGGATTTGGAGCCTCTCGCTCAGTTGCCTTATTTGAAAACCCTAAGCTT
CATGAATAACGTGTTGGATGGTCCATTGCCGGACCTTAAGAAWTTTAAAA
AGTTAAGGTCTTTGTATTTGTCCTACAATCATTTCTCTGGTGAGATTCCA
GCCGATGAATTTGAAGGTATGCATTTGTTGAGGAAATTGTATCTTGCAAA
CAATGAGTTTTCCGGCAAAATCCCGTCTTCCCTTACTACTTTGCCTAGGG
TTTTCGATGTGGGTCTTGAGGGGAACAAGTTTAGTGGCCAAATACCTGAT
TTTAAGCACAAGGCTTTGAAGAGGTTGAATGTATCTCAAAATGATTTGGA
GGGTCCAGTTCCAGAAAGCCTAAAAAAGATGGATCCAAGTAACTTTGCAG
GTAATTAATTAATATCGTTCATGCGTTAGTTTTGTTGCTATATTTGTTTG
ACTGATTAGTTTTGAATTGAAACTGAAATGTAGATGACTGATTCATTTTG
AATTCAAAGTGAAATTGCAACGGATGTGATCATCAAAATTTTCCCATTAG
GGTCATCATCCTTCATTTAAATCATCACCATTAACCATTTATGAATTTGG
ATCTGATTTTAACCAAAATGCAGGCAATGGAAAGCTATGTGGTTCGCCTC
TTCAGGGAGCATGCAGCCCCCCTCCTCCTCCTCCTTCTCCACCTGCTCCT
CCTCCTACAACTCCTGCCCCACCGCCTGAATGCACGGGGGATTCATGCGG
TGCGTCTAAGAAGCCGTCAGGTCTAAAAGTAGCCCTAATTGTGGTGAGTC
TATTACTTCTACTGGCCCTCATTGCTGCGATTTTCATGTTCCTCAACAAG
AGAAAGCAACGATCAGAATTAGACGGGACTGAATCATTGGACGAGTCCTC
CAATTATACGGCAGCTGCTGCAAGCAGCCAAATGGATGTTAAGTCGGTAG
AAACTAACCCACATCCAAAGAGAGCTGACCAGGGAAAGTTGTCATTTGTG
AGGGATGACAGACAGAGGTTTGATTTGCATGACCTTCTCAGAGCCTCGGC
TGAAATCTTGGGGAGCGGGAATTTTGGGGCTTCCTACAAGGCTTTGATCA
TGACTGATGTTGTGGTGGTCAAGAGGTATAAGCAGATGAACAATGTGGGA
AGAGAGGAGTTCCATGAGCACATGAGAAGGCTTGGAAGATTGACACACCA
AAACTTGTTGCCTCTGGTGGCCTATTATTATAGAAGGGAAGAGAAGCTCT
TGGTTTCTGACTTTGTGGAGAATGGTAGCTTGGCTTCTCATCTTCACGGT
GAGTTTTTTTTTTTTTTCTTGTGTCACAAGTTAGCTTAACATTAGGTCTC
CTTAATTATGTGCATGCTTGAATGAGTACTATTATGTTCCACCTACAATA
TTTACTGACTACATTTTTCATGACGTTTCTCTTAAGATTCAGTGGAATCC
ACGTTGCTGAGTGAGAGTGTGATCGTTAAAATATAGTACGAATTGATTTA
CTAATTCATAGTGAAATAACATCATGGTGGTAAATTTTTGTTTTCACAGG
CAATCATAATTCAGATATGCCCGTGCTTGATTGGCCAACACGTTTGAGAA
TAATCAAAGGCATAGCAAGGGGATTGACATACCTCTACAGCACACTCCCT
AGCTTGGTTGTACCCCATGGTCATCTGAAATCCTCTAATGTGCTTTTAGA
CGAAAACTTTGAGCCCCTACTGAACGACTATGCTCTACTCCCCGTGATCA
ACATGGAGCAAGCTCAACACCTGATGATGGCATACAAGTCACCCGAATAC
GCCCAGCACCGACGTATAACAAAGAAGACCGACCTATGGTGCTTCGGAAT
AATAATCTTGGAGGTGTTAACCGGAAAGTTCCCAGAGAACTACCTCAAGG
AAAGTTATGATAGTAAGGCGGATTTAGCAAATTGGGTCAATGGAATGATC
AAGGAAAAGAGAACAAGTGAGGTGTTTGATGTAGAAATGGGGAGAGTGGG
GAACAGTAGAGGAGAACTGTTAAAGCTCTTGAAGATTGGAGTGAGTTGTT
GTGAGGAGGATATTGAGAGAAGGCTGGATTTGAATGAAGTCGTTGAGAAG
ATTGAAGAATTGAACGAGGGAGAAAGCGATGGAGATTACCGATCAAGTGT
TTCTAGTGAAGGAGATGATTACCCTTCACAAGTGGTGTGA
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Coding sequence (CDS) from alignment at MDC023615.63:33024..35513+

>MDP0000772278 ID=MDP0000772278; Name=MDP0000772278; organism=Malus x domestica; type=CDS; length=2016bp; location=Sequence derived from: MDC023615.63:33024..35513+ (Malus x domestica
ATGGCTATGACTAGGCTTATGCGCGCACCAAACCCTACCCCAACATTTTT
TCTTACCCTCTTTGTTGGTTATGTATCATGCATGGCGGTTTTACCGTTTG
GTTCACCAATGGATACAACCACCGATGCCCTTTTGAAGTTCAAGAAAACG
TTGCAATTGGGAAACAACACCGAGGCTCTTAGAAATTGGGATCCTAACAA
AAACCCGTGTAATGGTAACAAGGCGAATTGGGTTGGCGTGCTTTGCTTTA
ATGGGAATGTCCGGGGATTGCAGCTCGAAAACTTGGGTTTACAGGGAAAG
CTGGATTTGGAGCCTCTCGCTCAGTTGCCTTATTTGAAAACCCTAAGCTT
CATGAATAACGTGTTGGATGGTCCATTGCCGGACCTTAAGAAWTTTAAAA
AGTTAAGGTCTTTGTATTTGTCCTACAATCATTTCTCTGGTGAGATTCCA
GCCGATGAATTTGAAGGTATGCATTTGTTGAGGAAATTGTATCTTGCAAA
CAATGAGTTTTCCGGCAAAATCCCGTCTTCCCTTACTACTTTGCCTAGGG
TTTTCGATGTGGGTCTTGAGGGGAACAAGTTTAGTGGCCAAATACCTGAT
TTTAAGCACAAGGCTTTGAAGAGGTTGAATGTATCTCAAAATGATTTGGA
GGGTCCAGTTCCAGAAAGCCTAAAAAAGATGGATCCAAGTAACTTTGCAG
GCAATGGAAAGCTATGTGGTTCGCCTCTTCAGGGAGCATGCAGCCCCCCT
CCTCCTCCTCCTTCTCCACCTGCTCCTCCTCCTACAACTCCTGCCCCACC
GCCTGAATGCACGGGGGATTCATGCGGTGCGTCTAAGAAGCCGTCAGGTC
TAAAAGTAGCCCTAATTGTGGTGAGTCTATTACTTCTACTGGCCCTCATT
GCTGCGATTTTCATGTTCCTCAACAAGAGAAAGCAACGATCAGAATTAGA
CGGGACTGAATCATTGGACGAGTCCTCCAATTATACGGCAGCTGCTGCAA
GCAGCCAAATGGATGTTAAGTCGGTAGAAACTAACCCACATCCAAAGAGA
GCTGACCAGGGAAAGTTGTCATTTGTGAGGGATGACAGACAGAGGTTTGA
TTTGCATGACCTTCTCAGAGCCTCGGCTGAAATCTTGGGGAGCGGGAATT
TTGGGGCTTCCTACAAGGCTTTGATCATGACTGATGTTGTGGTGGTCAAG
AGGTATAAGCAGATGAACAATGTGGGAAGAGAGGAGTTCCATGAGCACAT
GAGAAGGCTTGGAAGATTGACACACCAAAACTTGTTGCCTCTGGTGGCCT
ATTATTATAGAAGGGAAGAGAAGCTCTTGGTTTCTGACTTTGTGGAGAAT
GGTAGCTTGGCTTCTCATCTTCACGGCAATCATAATTCAGATATGCCCGT
GCTTGATTGGCCAACACGTTTGAGAATAATCAAAGGCATAGCAAGGGGAT
TGACATACCTCTACAGCACACTCCCTAGCTTGGTTGTACCCCATGGTCAT
CTGAAATCCTCTAATGTGCTTTTAGACGAAAACTTTGAGCCCCTACTGAA
CGACTATGCTCTACTCCCCGTGATCAACATGGAGCAAGCTCAACACCTGA
TGATGGCATACAAGTCACCCGAATACGCCCAGCACCGACGTATAACAAAG
AAGACCGACCTATGGTGCTTCGGAATAATAATCTTGGAGGTGTTAACCGG
AAAGTTCCCAGAGAACTACCTCAAGGAAAGTTATGATAGTAAGGCGGATT
TAGCAAATTGGGTCAATGGAATGATCAAGGAAAAGAGAACAAGTGAGGTG
TTTGATGTAGAAATGGGGAGAGTGGGGAACAGTAGAGGAGAACTGTTAAA
GCTCTTGAAGATTGGAGTGAGTTGTTGTGAGGAGGATATTGAGAGAAGGC
TGGATTTGAATGAAGTCGTTGAGAAGATTGAAGAATTGAACGAGGGAGAA
AGCGATGGAGATTACCGATCAAGTGTTTCTAGTGAAGGAGATGATTACCC
TTCACAAGTGGTGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR002290Ser/Thr_dual-sp_kinase
IPR011009Kinase-like_dom_sf
IPR013210LRR_N_plant-typ
IPR020635Tyr_kinase_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0004713protein tyrosine kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation