MDP0000785852, MDP0000785852 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000785852
Unique NameMDP0000785852
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length2169
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000785852_exon_2MDP0000785852_exon_2Malus x domesticaCDS
MDP0000785852_exon_1MDP0000785852_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000785852MDP0000785852Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000070Pectinesterase, catalyticPFAMPF01095Pectinesterasecoord: 264..561
score: 6.3e
IPR006501Pectinesterase inhibitorGENE3D1.20.140.40no descriptioncoord: 53..209
score: 3.1
IPR006501Pectinesterase inhibitorPFAMPF04043PMEIcoord: 52..204
score: 2.8
IPR006501Pectinesterase inhibitorSMARTSM00856Plant invertase/pectin methylesterase inhibicoord: 52..204
score: 2.6
IPR006501Pectinesterase inhibitorTIGRFAMsTIGR01614PME_inhib: pectinesterase inhibitor domaincoord: 51..208
score: 1.5
IPR006501Pectinesterase inhibitorSUPERFAMILY101148Plant invertase/pectin methylesterase inhibitorcoord: 54..211
score: 1.1
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 257..575
score: 1.6e
IPR012334Pectin lyase foldGENE3D2.160.20.10no descriptioncoord: 260..574
score: 4.5e
IPR018040Pectinesterase, active sitePROSITEPS00503PECTINESTERASE_2coord: 409..418
score
NoneNo IPR availablePANTHERPTHR22931FAMILY NOT NAMEDcoord: 54..511
score: 1.1
NoneNo IPR availablePANTHERPTHR22931:SF5METHYLESTERASE INHIBITOR-RELATEDcoord: 54..511
score: 1.1
NoneNo IPR availableSEGsegsegcoord: 15..41
score: NAcoord: 215..237
score: NAcoord: 334..350
score
NoneNo IPR availableSEGsegsegcoord: 45..58
score
NoneNo IPR availableSEGsegsegcoord: 27..33
score
NoneNo IPR availableSEGsegsegcoord: 3..16
score
NoneNo IPR availableSEGsegsegcoord: 131..142
score
NoneNo IPR availableSEGsegsegcoord: 60..79
score
NoneNo IPR availableSEGsegsegcoord: 25..44
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000785852 ID=MDP0000785852; Name=MDP0000785852; organism=Malus x domestica; type=mRNA; length=2169bp
ATGAACGCTGAACATAATAAGAAGAAGAAGTTCGCCATCATCGGCGTTTC
ATCTGTGATTCTAGTAGCCATGGTGGTTGCCGTAACGGTTGGGGTAACCA
CAAAAAACAAAGTAGGGGGAGGGCACAAAAACTCGGACGGCGGGCATGTC
ACCACGTCGACCAAAGCAATAAAGGCTATATGCCAGCCGACGGATTATAA
GGAAACCTGCGAGAGGAGTCTGGAATCGGCTGCTGGCAACAGCACGGAGC
CGAAAGACCTCATCAAGGCAGGTTTCAACGTTACCATGGACAAACTTCGG
GCCATCATAAAAAACTCCACCACATTGCAAGAACTGGCCAAGGACGAAAG
TACAAACCAAGCTCTAGAAAATTGCAAGGAGCTCTTGGAGTATGCCATCG
ACGATCTCACGACATCTTTCCAAAAATTGGGTCCTTTCGACATCAGCAAG
ATCGATGATTACGCGGAAGATCTCAAGGTCTGGCTCAGCGCGGCTATTAC
TTACCAACAAACATGCTTGGACGGGTTTCAGAACACCAAAGGCGACGCCG
GCGACAAGATGAAGCGTTTCTTGAACACCACGCAACAGCTCACCAGCAAC
GGACTTGCCATGGTGACCGAAATTACTTCCGTGCTTGGGTCTCTCAATTT
GAAAGCAAACCGGCGTCGTTTGCTGGCAGGGGGAGGGGGTGGAGGTAATG
CGAAGAATGCTCCAAAGGTTATTCCTACGTGGATCAACAATAAGCGTAGC
CTCGACGTGTCTACCGTGACTCCACAGTCGATTAAACCGGACGCAGTGGT
GGCTAAGGATGGGAGTGGACAGTACGAGACTATTGGTGAAGCTGTGAAGA
TGATCCCGAAGAACAATGCGGACAAGACGTTTGTGATTTATGTGAAGGAG
GGAGTGTACAGTGAGTATGTCATGATTGACAAGTATATGACCAACGTCAT
GTTGATTGGGGATGGCGCTRCTAAGACCAAGGTCACCGGTAGCAAAAACT
TCGCTGCGGGAGTCCAAACTTTTCAGACTGCAACAGTCGGTAAGTATTTG
AGCGAAGTCTCTTACAAACTTTGTTCTCTTTGGGACATGTATAYGTGGCA
TGTGTAATATAGATTTTCACAATATGACAATATAACAGACATACTAGCAT
AACATAGCGTAAATTATATGTAGCTGTTTGAGACTTGAGAGATTATTTCG
TTGTAAGGGACGACATAGGATTATAGAATGACCCGAACTCATACATGAAT
CATGACGTTCTTATGATTAATTATGACTTACTTATGAATCGTGATTGTTC
AAGGGCCCTTGAAAATTCAGCTGAGCTCATACATAACATTGTACATTAGC
AAACTACATATGATTTATACTTATGTATTATAATTTTAATCATAACCAAT
ATTTAGTATTAACAATTTGACAACATATAACACGTTAATAATTAACTAGT
TGATATTTCATTGATATGCAGTTGTAGTTGGGGACTACTTCATTGCTAAG
GACATAGGGATTGAGAACTCAGCAGGAGCCGAAGGGCACCAAGCCGTGGC
TCTGCGAGTGCAGTCGGACTTGTCCATCTTCTACCGCTGCCAAATGGACG
GGTACCAAGACACTCTCTACACTCAAACCCACCGGCAATTCTACCGCGAC
TGCACCATCAGCGGCACAATCGACTTTATCTTTGGAGACGCTGCCGTAGT
GTTCCAGAACTGCAAGATGATCGTAAGAAAACCAATGGACAACCAAGCTT
GCATGGTCACAGCCCAAGGGAGAATTGACCGGCGTCAGCCCTCGGGTATC
ATCCTCCAAAACTGCACCATCTCCGGGGACCCGGAGTACATTCCCGTGAA
GGACAAGAACAAGTCGTACCTGGGGAGGCCGTGGAAGAACCTAGCTAGGA
CCGTCGTGATGCAGTCGCAGATTGATGGCATCATTGCTCCGGAAGGGTGG
ATGGAGTGGACGGGTTCGAACAATCATCAAAGTTGCTGGTTTGGCGAATA
CAGAAACAGAGGGCCTGGCTCCCACATGAGCAAGAGGGTGAAGTGGAGCG
GCATCAAGAATCTTAGTGCCGACCAGGCTGTCGCTTTCACCTCCGGTAAG
TTTGTTGAGGGTGATAAGTGGATCAAGCCCAGCGGTGTGCCTTACGTTGC
TGGCATGGTTTCCGTTTAG
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protein sequence of MDP0000785852

>MDP0000785852 ID=MDP0000785852; Name=MDP0000785852; organism=Malus x domestica; type=polypeptide; length=579bp
MNAEHNKKKKFAIIGVSSVILVAMVVAVTVGVTTKNKVGGGHKNSDGGHV
TTSTKAIKAICQPTDYKETCERSLESAAGNSTEPKDLIKAGFNVTMDKLR
AIIKNSTTLQELAKDESTNQALENCKELLEYAIDDLTTSFQKLGPFDISK
IDDYAEDLKVWLSAAITYQQTCLDGFQNTKGDAGDKMKRFLNTTQQLTSN
GLAMVTEITSVLGSLNLKANRRRLLAGGGGGGNAKNAPKVIPTWINNKRS
LDVSTVTPQSIKPDAVVAKDGSGQYETIGEAVKMIPKNNADKTFVIYVKE
GVYSEYVMIDKYMTNVMLIGDGAXKTKVTGSKNFAAGVQTFQTATVVVVG
DYFIAKDIGIENSAGAEGHQAVALRVQSDLSIFYRCQMDGYQDTLYTQTH
RQFYRDCTISGTIDFIFGDAAVVFQNCKMIVRKPMDNQACMVTAQGRIDR
RQPSGIILQNCTISGDPEYIPVKDKNKSYLGRPWKNLARTVVMQSQIDGI
IAPEGWMEWTGSNNHQSCWFGEYRNRGPGSHMSKRVKWSGIKNLSADQAV
AFTSGKFVEGDKWIKPSGVPYVAGMVSV*
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mRNA from alignment at chr13:14885079..14887247-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000785852 ID=MDP0000785852; Name=MDP0000785852; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:14885079..14887247- (Malus x domestica
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mRNA from alignment at MDC011238.343:18746..20914-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000785852 ID=MDP0000785852; Name=MDP0000785852; organism=Malus x domestica; type=mRNA; length=2169bp; location=Sequence derived from: MDC011238.343:18746..20914- (Malus x domestica
ATGAACGCTGAACATAATAAGAAGAAGAAGTTCGCCATCATCGGCGTTTC
ATCTGTGATTCTAGTAGCCATGGTGGTTGCCGTAACGGTTGGGGTAACCA
CAAAAAACAAAGTAGGGGGAGGGCACAAAAACTCGGACGGCGGGCATGTC
ACCACGTCGACCAAAGCAATAAAGGCTATATGCCAGCCGACGGATTATAA
GGAAACCTGCGAGAGGAGTCTGGAATCGGCTGCTGGCAACAGCACGGAGC
CGAAAGACCTCATCAAGGCAGGTTTCAACGTTACCATGGACAAACTTCGG
GCCATCATAAAAAACTCCACCACATTGCAAGAACTGGCCAAGGACGAAAG
TACAAACCAAGCTCTAGAAAATTGCAAGGAGCTCTTGGAGTATGCCATCG
ACGATCTCACGACATCTTTCCAAAAATTGGGTCCTTTCGACATCAGCAAG
ATCGATGATTACGCGGAAGATCTCAAGGTCTGGCTCAGCGCGGCTATTAC
TTACCAACAAACATGCTTGGACGGGTTTCAGAACACCAAAGGCGACGCCG
GCGACAAGATGAAGCGTTTCTTGAACACCACGCAACAGCTCACCAGCAAC
GGACTTGCCATGGTGACCGAAATTACTTCCGTGCTTGGGTCTCTCAATTT
GAAAGCAAACCGGCGTCGTTTGCTGGCAGGGGGAGGGGGTGGAGGTAATG
CGAAGAATGCTCCAAAGGTTATTCCTACGTGGATCAACAATAAGCGTAGC
CTCGACGTGTCTACCGTGACTCCACAGTCGATTAAACCGGACGCAGTGGT
GGCTAAGGATGGGAGTGGACAGTACGAGACTATTGGTGAAGCTGTGAAGA
TGATCCCGAAGAACAATGCGGACAAGACGTTTGTGATTTATGTGAAGGAG
GGAGTGTACAGTGAGTATGTCATGATTGACAAGTATATGACCAACGTCAT
GTTGATTGGGGATGGCGCTRCTAAGACCAAGGTCACCGGTAGCAAAAACT
TCGCTGCGGGAGTCCAAACTTTTCAGACTGCAACAGTCGGTAAGTATTTG
AGCGAAGTCTCTTACAAACTTTGTTCTCTTTGGGACATGTATAYGTGGCA
TGTGTAATATAGATTTTCACAATATGACAATATAACAGACATACTAGCAT
AACATAGCGTAAATTATATGTAGCTGTTTGAGACTTGAGAGATTATTTCG
TTGTAAGGGACGACATAGGATTATAGAATGACCCGAACTCATACATGAAT
CATGACGTTCTTATGATTAATTATGACTTACTTATGAATCGTGATTGTTC
AAGGGCCCTTGAAAATTCAGCTGAGCTCATACATAACATTGTACATTAGC
AAACTACATATGATTTATACTTATGTATTATAATTTTAATCATAACCAAT
ATTTAGTATTAACAATTTGACAACATATAACACGTTAATAATTAACTAGT
TGATATTTCATTGATATGCAGTTGTAGTTGGGGACTACTTCATTGCTAAG
GACATAGGGATTGAGAACTCAGCAGGAGCCGAAGGGCACCAAGCCGTGGC
TCTGCGAGTGCAGTCGGACTTGTCCATCTTCTACCGCTGCCAAATGGACG
GGTACCAAGACACTCTCTACACTCAAACCCACCGGCAATTCTACCGCGAC
TGCACCATCAGCGGCACAATCGACTTTATCTTTGGAGACGCTGCCGTAGT
GTTCCAGAACTGCAAGATGATCGTAAGAAAACCAATGGACAACCAAGCTT
GCATGGTCACAGCCCAAGGGAGAATTGACCGGCGTCAGCCCTCGGGTATC
ATCCTCCAAAACTGCACCATCTCCGGGGACCCGGAGTACATTCCCGTGAA
GGACAAGAACAAGTCGTACCTGGGGAGGCCGTGGAAGAACCTAGCTAGGA
CCGTCGTGATGCAGTCGCAGATTGATGGCATCATTGCTCCGGAAGGGTGG
ATGGAGTGGACGGGTTCGAACAATCATCAAAGTTGCTGGTTTGGCGAATA
CAGAAACAGAGGGCCTGGCTCCCACATGAGCAAGAGGGTGAAGTGGAGCG
GCATCAAGAATCTTAGTGCCGACCAGGCTGTCGCTTTCACCTCCGGTAAG
TTTGTTGAGGGTGATAAGTGGATCAAGCCCAGCGGTGTGCCTTACGTTGC
TGGCATGGTTTCCGTTTAG
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Coding sequence (CDS) from alignment at MDC011238.343:18746..20914-

>MDP0000785852 ID=MDP0000785852; Name=MDP0000785852; organism=Malus x domestica; type=CDS; length=1737bp; location=Sequence derived from: MDC011238.343:18746..20914- (Malus x domestica
ATGAACGCTGAACATAATAAGAAGAAGAAGTTCGCCATCATCGGCGTTTC
ATCTGTGATTCTAGTAGCCATGGTGGTTGCCGTAACGGTTGGGGTAACCA
CAAAAAACAAAGTAGGGGGAGGGCACAAAAACTCGGACGGCGGGCATGTC
ACCACGTCGACCAAAGCAATAAAGGCTATATGCCAGCCGACGGATTATAA
GGAAACCTGCGAGAGGAGTCTGGAATCGGCTGCTGGCAACAGCACGGAGC
CGAAAGACCTCATCAAGGCAGGTTTCAACGTTACCATGGACAAACTTCGG
GCCATCATAAAAAACTCCACCACATTGCAAGAACTGGCCAAGGACGAAAG
TACAAACCAAGCTCTAGAAAATTGCAAGGAGCTCTTGGAGTATGCCATCG
ACGATCTCACGACATCTTTCCAAAAATTGGGTCCTTTCGACATCAGCAAG
ATCGATGATTACGCGGAAGATCTCAAGGTCTGGCTCAGCGCGGCTATTAC
TTACCAACAAACATGCTTGGACGGGTTTCAGAACACCAAAGGCGACGCCG
GCGACAAGATGAAGCGTTTCTTGAACACCACGCAACAGCTCACCAGCAAC
GGACTTGCCATGGTGACCGAAATTACTTCCGTGCTTGGGTCTCTCAATTT
GAAAGCAAACCGGCGTCGTTTGCTGGCAGGGGGAGGGGGTGGAGGTAATG
CGAAGAATGCTCCAAAGGTTATTCCTACGTGGATCAACAATAAGCGTAGC
CTCGACGTGTCTACCGTGACTCCACAGTCGATTAAACCGGACGCAGTGGT
GGCTAAGGATGGGAGTGGACAGTACGAGACTATTGGTGAAGCTGTGAAGA
TGATCCCGAAGAACAATGCGGACAAGACGTTTGTGATTTATGTGAAGGAG
GGAGTGTACAGTGAGTATGTCATGATTGACAAGTATATGACCAACGTCAT
GTTGATTGGGGATGGCGCTRCTAAGACCAAGGTCACCGGTAGCAAAAACT
TCGCTGCGGGAGTCCAAACTTTTCAGACTGCAACAGTCGTTGTAGTTGGG
GACTACTTCATTGCTAAGGACATAGGGATTGAGAACTCAGCAGGAGCCGA
AGGGCACCAAGCCGTGGCTCTGCGAGTGCAGTCGGACTTGTCCATCTTCT
ACCGCTGCCAAATGGACGGGTACCAAGACACTCTCTACACTCAAACCCAC
CGGCAATTCTACCGCGACTGCACCATCAGCGGCACAATCGACTTTATCTT
TGGAGACGCTGCCGTAGTGTTCCAGAACTGCAAGATGATCGTAAGAAAAC
CAATGGACAACCAAGCTTGCATGGTCACAGCCCAAGGGAGAATTGACCGG
CGTCAGCCCTCGGGTATCATCCTCCAAAACTGCACCATCTCCGGGGACCC
GGAGTACATTCCCGTGAAGGACAAGAACAAGTCGTACCTGGGGAGGCCGT
GGAAGAACCTAGCTAGGACCGTCGTGATGCAGTCGCAGATTGATGGCATC
ATTGCTCCGGAAGGGTGGATGGAGTGGACGGGTTCGAACAATCATCAAAG
TTGCTGGTTTGGCGAATACAGAAACAGAGGGCCTGGCTCCCACATGAGCA
AGAGGGTGAAGTGGAGCGGCATCAAGAATCTTAGTGCCGACCAGGCTGTC
GCTTTCACCTCCGGTAAGTTTGTTGAGGGTGATAAGTGGATCAAGCCCAG
CGGTGTGCCTTACGTTGCTGGCATGGTTTCCGTTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000070Pectinesterase_cat
IPR006501Pectinesterase_inhib_dom
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
IPR018040Pectinesterase_Tyr_AS
Vocabulary: Cellular Component
TermDefinition
GO:0005618cell wall
Vocabulary: Molecular Function
TermDefinition
GO:0030599pectinesterase activity
GO:0004857enzyme inhibitor activity
Vocabulary: Biological Process
TermDefinition
GO:0042545cell wall modification