MDP0000823143, MDP0000823143 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000823143
Unique Name	MDP0000823143
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	1819

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr13	chromosome	chr13:13242630..13244448 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC022003.110	contig	MDC022003.110:43411..45229 +	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000823143_exon_2	MDP0000823143_exon_2	Malus x domestica	CDS
MDP0000823143_exon_1	MDP0000823143_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000823143	MDP0000823143	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000070	Pectinesterase, catalytic	PFAM	PF01095	Pectinesterase	coord: 254..548 score: 1.4e
IPR006501	Pectinesterase inhibitor	GENE3D	1.20.140.40	no description	coord: 41..197 score: 1.6
IPR006501	Pectinesterase inhibitor	PFAM	PF04043	PMEI	coord: 40..193 score: 2.7
IPR006501	Pectinesterase inhibitor	SMART	SM00856	Plant invertase/pectin methylesterase inhibi	coord: 40..193 score: 1.3
IPR006501	Pectinesterase inhibitor	TIGRFAMs	TIGR01614	PME_inhib: pectinesterase inhibitor domain	coord: 21..195 score: 4.8
IPR006501	Pectinesterase inhibitor	SUPERFAMILY	101148	Plant invertase/pectin methylesterase inhibitor	coord: 42..200 score: 3.2
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 247..564 score: 1.4e
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10	no description	coord: 251..563 score: 2.1e
IPR018040	Pectinesterase, active site	PROSITE	PS00503	PECTINESTERASE_2	coord: 398..407 score
None	No IPR available	PANTHER	PTHR22931	FAMILY NOT NAMED	coord: 38..512 score: 8.8
None	No IPR available	PANTHER	PTHR22931:SF5	METHYLESTERASE INHIBITOR-RELATED	coord: 38..512 score: 8.8
None	No IPR available	SEG	seg	seg	coord: 7..28 score
None	No IPR available	SEG	seg	seg	coord: 162..172 score
None	No IPR available	SEG	seg	seg	coord: 26..40 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr13:13242630..13244448+
mRNA from alignment at MDC022003.110:43411..45229+
coding sequence from alignment at MDC022003.110:43411..45229+

mRNA sequence

>MDP0000823143 ID=MDP0000823143; Name=MDP0000823143; organism=Malus x domestica; type=mRNA; length=1819bp
ATGGAGAAGAGAGGAAAGCTGGTGGTAGGAGGAGTTTCCATCATCCTTAT
CGTCGGCGTGGTGATCGGCCTTGTAGCTGTAGTTTGCACAAAAAAGAGTA
ACAAGGACCAACTTTCCACAAGTTCTAAGGCCGTTGCTGCTATTTGTGAT
CCTACGGATTACAAAGAGGCATGCATCGACAGCCTTGGATCCGTCGCGAA
AAATGATAGCGCCACGCCCAAAGACCTCATCCAGGCCGCCATTGATTCCA
CAATTAAAACCGTAAAGTCTGCGATAGAGAACTCTAACAGCATTGCCAAA
TCCTTTAAAGCGATCAACTCGACGGGTAAAATGGCGATGGACGATTGCAA
GGACTTGTTGGAATCGGCAATTGCCGATCTCCAAGCCTCTTTTTCGTTCG
TTGGGGATAGCAACATGCACACAATGCACGACAGAGAGGAAGAGCTGCGG
AATTGGTTCAGCGCGGTGATATCGTTCCAACAATCGTGCCTTGACGGCAT
TCCTCAGGAGGAGCTCCAAAAGCTCATGAAAGATAGCCTTCTCAACGCCA
CACAGCTAACCAGCAATGCCTTGGCAATTGCCACATCAATTGCACAAATC
TTAGAGAACTTCAACATCACATTGAACAAAGACTTAAGGCCAACGAGCAG
CTCGCGGATCCTTGAGCAAGAAAACGATGGGCATGGCCAGTATCCTAGTT
GGTTTCCGGCCGCGGACAGGCGGCTGTTGGCAAAACAAGACAATGGAGGG
GTTAAACCTAATGCCGTAGTGGCGAAGGACGGGAGTGGACAGTTTAAGAC
CATTGGTGCTGCCCTTGCTGCATATCCAAAGGGGCTTCAAGGAAGATATA
TCATATATGTGAAGGCTGGGGTTTACAATGAGTATGTTACTGTCACCAAA
AATCAGGTCAATGTGTTCATGTATGGAGACGGACCCCGGAAGACCATGGT
CACCGGAAGTAAAAGCTTTGCCGATGGCATCACCACTCAGAACACCGCCA
CATTCGGTGAGTCATCTGTTAGATATTATCGCTACTACTAGGGTTACCAA
ATGTGTTCACTAAATGCGACATATGTACTTACAATATAGAAAGGCTTGTA
ATAATTTTTTTAATGTAATCACAGCTGCAATTGGAAACGGATTTCTAGCA
AAGGGGATGGGGTTTCAGAACACGGCAGGCGCCCAGAAGCATCAGGCTGT
GGCACTGCGAGTCCAGTCGGAGATGTCAGCCTTCTTCAACTGCAGAATGG
ACGCCTACCAAGACACGTTGTACGCGCAAACACATCGCCAATTCTATCGA
AACTGTGTCATTTCTGGCACAGTTGACTTCATCTTTGGTGACTCGCCAAC
GCTGATCCAAAATTCTTTGATCATAGTGAGGAAGCCTATGGACAACCAAA
AGAACACAGTGACGGCTCAGGGAAGAGAGGACAGGAGGGAAAACACCGCC
ATTGTCATCCAGAACTGCAGAATAGTCCCTGAGGAGGTTCTGTTCCCATT
AAGGTTCAAGATTCCGTCATACTTAGGCAGGCCATGGAAGACGTATGCAA
GGACGGTGATCATGGAGTCGGAGCTCGGAGACTTCATACAACCAGCAGGG
TGGCTACCCTGGAGTGGCAACTTTGCACTCGATACTCTATATTACGCAGA
GTATGGGAATCGGGGTCCGGGGGCTGCGACCAACCAAAGGGTGAGATGGA
AGGGATATCATGTGATTAACAGAAATGACGCTGTCCAGTTCACCGCCGGT
CCATTTCTATTGGCGGATCGGTGGTTGAAAACCACCGGCATACCGTACTT
TGCCGGTTTGAAAACCTAG

protein sequence of MDP0000823143

>MDP0000823143 ID=MDP0000823143; Name=MDP0000823143; organism=Malus x domestica; type=polypeptide; length=567bp
MEKRGKLVVGGVSIILIVGVVIGLVAVVCTKKSNKDQLSTSSKAVAAICD
PTDYKEACIDSLGSVAKNDSATPKDLIQAAIDSTIKTVKSAIENSNSIAK
SFKAINSTGKMAMDDCKDLLESAIADLQASFSFVGDSNMHTMHDREEELR
NWFSAVISFQQSCLDGIPQEELQKLMKDSLLNATQLTSNALAIATSIAQI
LENFNITLNKDLRPTSSSRILEQENDGHGQYPSWFPAADRRLLAKQDNGG
VKPNAVVAKDGSGQFKTIGAALAAYPKGLQGRYIIYVKAGVYNEYVTVTK
NQVNVFMYGDGPRKTMVTGSKSFADGITTQNTATFAAIGNGFLAKGMGFQ
NTAGAQKHQAVALRVQSEMSAFFNCRMDAYQDTLYAQTHRQFYRNCVISG
TVDFIFGDSPTLIQNSLIIVRKPMDNQKNTVTAQGREDRRENTAIVIQNC
RIVPEEVLFPLRFKIPSYLGRPWKTYARTVIMESELGDFIQPAGWLPWSG
NFALDTLYYAEYGNRGPGAATNQRVRWKGYHVINRNDAVQFTAGPFLLAD
RWLKTTGIPYFAGLKT*

mRNA from alignment at chr13:13242630..13244448+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000823143 ID=MDP0000823143; Name=MDP0000823143; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:13242630..13244448+ (Malus x domestica

mRNA from alignment at MDC022003.110:43411..45229+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000823143 ID=MDP0000823143; Name=MDP0000823143; organism=Malus x domestica; type=mRNA; length=1819bp; location=Sequence derived from: MDC022003.110:43411..45229+ (Malus x domestica
ATGGAGAAGAGAGGAAAGCTGGTGGTAGGAGGAGTTTCCATCATCCTTAT
CGTCGGCGTGGTGATCGGCCTTGTAGCTGTAGTTTGCACAAAAAAGAGTA
ACAAGGACCAACTTTCCACAAGTTCTAAGGCCGTTGCTGCTATTTGTGAT
CCTACGGATTACAAAGAGGCATGCATCGACAGCCTTGGATCCGTCGCGAA
AAATGATAGCGCCACGCCCAAAGACCTCATCCAGGCCGCCATTGATTCCA
CAATTAAAACCGTAAAGTCTGCGATAGAGAACTCTAACAGCATTGCCAAA
TCCTTTAAAGCGATCAACTCGACGGGTAAAATGGCGATGGACGATTGCAA
GGACTTGTTGGAATCGGCAATTGCCGATCTCCAAGCCTCTTTTTCGTTCG
TTGGGGATAGCAACATGCACACAATGCACGACAGAGAGGAAGAGCTGCGG
AATTGGTTCAGCGCGGTGATATCGTTCCAACAATCGTGCCTTGACGGCAT
TCCTCAGGAGGAGCTCCAAAAGCTCATGAAAGATAGCCTTCTCAACGCCA
CACAGCTAACCAGCAATGCCTTGGCAATTGCCACATCAATTGCACAAATC
TTAGAGAACTTCAACATCACATTGAACAAAGACTTAAGGCCAACGAGCAG
CTCGCGGATCCTTGAGCAAGAAAACGATGGGCATGGCCAGTATCCTAGTT
GGTTTCCGGCCGCGGACAGGCGGCTGTTGGCAAAACAAGACAATGGAGGG
GTTAAACCTAATGCCGTAGTGGCGAAGGACGGGAGTGGACAGTTTAAGAC
CATTGGTGCTGCCCTTGCTGCATATCCAAAGGGGCTTCAAGGAAGATATA
TCATATATGTGAAGGCTGGGGTTTACAATGAGTATGTTACTGTCACCAAA
AATCAGGTCAATGTGTTCATGTATGGAGACGGACCCCGGAAGACCATGGT
CACCGGAAGTAAAAGCTTTGCCGATGGCATCACCACTCAGAACACCGCCA
CATTCGGTGAGTCATCTGTTAGATATTATCGCTACTACTAGGGTTACCAA
ATGTGTTCACTAAATGCGACATATGTACTTACAATATAGAAAGGCTTGTA
ATAATTTTTTTAATGTAATCACAGCTGCAATTGGAAACGGATTTCTAGCA
AAGGGGATGGGGTTTCAGAACACGGCAGGCGCCCAGAAGCATCAGGCTGT
GGCACTGCGAGTCCAGTCGGAGATGTCAGCCTTCTTCAACTGCAGAATGG
ACGCCTACCAAGACACGTTGTACGCGCAAACACATCGCCAATTCTATCGA
AACTGTGTCATTTCTGGCACAGTTGACTTCATCTTTGGTGACTCGCCAAC
GCTGATCCAAAATTCTTTGATCATAGTGAGGAAGCCTATGGACAACCAAA
AGAACACAGTGACGGCTCAGGGAAGAGAGGACAGGAGGGAAAACACCGCC
ATTGTCATCCAGAACTGCAGAATAGTCCCTGAGGAGGTTCTGTTCCCATT
AAGGTTCAAGATTCCGTCATACTTAGGCAGGCCATGGAAGACGTATGCAA
GGACGGTGATCATGGAGTCGGAGCTCGGAGACTTCATACAACCAGCAGGG
TGGCTACCCTGGAGTGGCAACTTTGCACTCGATACTCTATATTACGCAGA
GTATGGGAATCGGGGTCCGGGGGCTGCGACCAACCAAAGGGTGAGATGGA
AGGGATATCATGTGATTAACAGAAATGACGCTGTCCAGTTCACCGCCGGT
CCATTTCTATTGGCGGATCGGTGGTTGAAAACCACCGGCATACCGTACTT
TGCCGGTTTGAAAACCTAG

Coding sequence (CDS) from alignment at MDC022003.110:43411..45229+

>MDP0000823143 ID=MDP0000823143; Name=MDP0000823143; organism=Malus x domestica; type=CDS; length=1701bp; location=Sequence derived from: MDC022003.110:43411..45229+ (Malus x domestica
ATGGAGAAGAGAGGAAAGCTGGTGGTAGGAGGAGTTTCCATCATCCTTAT
CGTCGGCGTGGTGATCGGCCTTGTAGCTGTAGTTTGCACAAAAAAGAGTA
ACAAGGACCAACTTTCCACAAGTTCTAAGGCCGTTGCTGCTATTTGTGAT
CCTACGGATTACAAAGAGGCATGCATCGACAGCCTTGGATCCGTCGCGAA
AAATGATAGCGCCACGCCCAAAGACCTCATCCAGGCCGCCATTGATTCCA
CAATTAAAACCGTAAAGTCTGCGATAGAGAACTCTAACAGCATTGCCAAA
TCCTTTAAAGCGATCAACTCGACGGGTAAAATGGCGATGGACGATTGCAA
GGACTTGTTGGAATCGGCAATTGCCGATCTCCAAGCCTCTTTTTCGTTCG
TTGGGGATAGCAACATGCACACAATGCACGACAGAGAGGAAGAGCTGCGG
AATTGGTTCAGCGCGGTGATATCGTTCCAACAATCGTGCCTTGACGGCAT
TCCTCAGGAGGAGCTCCAAAAGCTCATGAAAGATAGCCTTCTCAACGCCA
CACAGCTAACCAGCAATGCCTTGGCAATTGCCACATCAATTGCACAAATC
TTAGAGAACTTCAACATCACATTGAACAAAGACTTAAGGCCAACGAGCAG
CTCGCGGATCCTTGAGCAAGAAAACGATGGGCATGGCCAGTATCCTAGTT
GGTTTCCGGCCGCGGACAGGCGGCTGTTGGCAAAACAAGACAATGGAGGG
GTTAAACCTAATGCCGTAGTGGCGAAGGACGGGAGTGGACAGTTTAAGAC
CATTGGTGCTGCCCTTGCTGCATATCCAAAGGGGCTTCAAGGAAGATATA
TCATATATGTGAAGGCTGGGGTTTACAATGAGTATGTTACTGTCACCAAA
AATCAGGTCAATGTGTTCATGTATGGAGACGGACCCCGGAAGACCATGGT
CACCGGAAGTAAAAGCTTTGCCGATGGCATCACCACTCAGAACACCGCCA
CATTCGCTGCAATTGGAAACGGATTTCTAGCAAAGGGGATGGGGTTTCAG
AACACGGCAGGCGCCCAGAAGCATCAGGCTGTGGCACTGCGAGTCCAGTC
GGAGATGTCAGCCTTCTTCAACTGCAGAATGGACGCCTACCAAGACACGT
TGTACGCGCAAACACATCGCCAATTCTATCGAAACTGTGTCATTTCTGGC
ACAGTTGACTTCATCTTTGGTGACTCGCCAACGCTGATCCAAAATTCTTT
GATCATAGTGAGGAAGCCTATGGACAACCAAAAGAACACAGTGACGGCTC
AGGGAAGAGAGGACAGGAGGGAAAACACCGCCATTGTCATCCAGAACTGC
AGAATAGTCCCTGAGGAGGTTCTGTTCCCATTAAGGTTCAAGATTCCGTC
ATACTTAGGCAGGCCATGGAAGACGTATGCAAGGACGGTGATCATGGAGT
CGGAGCTCGGAGACTTCATACAACCAGCAGGGTGGCTACCCTGGAGTGGC
AACTTTGCACTCGATACTCTATATTACGCAGAGTATGGGAATCGGGGTCC
GGGGGCTGCGACCAACCAAAGGGTGAGATGGAAGGGATATCATGTGATTA
ACAGAAATGACGCTGTCCAGTTCACCGCCGGTCCATTTCTATTGGCGGAT
CGGTGGTTGAAAACCACCGGCATACCGTACTTTGCCGGTTTGAAAACCTA
G

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000070	Pectinesterase_cat
IPR006501	Pectinesterase_inhib_dom
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold
IPR018040	Pectinesterase_Tyr_AS

Vocabulary: **Cellular Component**
Term	Definition
GO:0005618	cell wall

Vocabulary: **Molecular Function**
Term	Definition
GO:0030599	pectinesterase activity
GO:0004857	enzyme inhibitor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0042545	cell wall modification