MDP0000874373, MDP0000874373 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000874373
Unique NameMDP0000874373
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length3558
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000874373_exon_7MDP0000874373_exon_7Malus x domesticaCDS
MDP0000874373_exon_6MDP0000874373_exon_6Malus x domesticaCDS
MDP0000874373_exon_5MDP0000874373_exon_5Malus x domesticaCDS
MDP0000874373_exon_4MDP0000874373_exon_4Malus x domesticaCDS
MDP0000874373_exon_3MDP0000874373_exon_3Malus x domesticaCDS
MDP0000874373_exon_2MDP0000874373_exon_2Malus x domesticaCDS
MDP0000874373_exon_1MDP0000874373_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000874373MDP0000874373Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004843Metallophosphoesterase domainPFAMPF00149Metallophoscoord: 232..445
score: 1.6
IPR008963Purple acid phosphatase-like, N-terminalSUPERFAMILY49363Purple acid phosphatase, N-terminal domaincoord: 85..222
score: 4.8
IPR015914Purple acid phosphatase, N-terminalGENE3D2.60.40.380no descriptioncoord: 109..223
score: 5.1
NoneNo IPR availableGENE3D3.60.21.10no descriptioncoord: 517..570
score: 1.4
NoneNo IPR availablePANTHERPTHR22953FAMILY NOT NAMEDcoord: 106..573
score: 9.5e
NoneNo IPR availablePFAMPF14008Metallophos_Ccoord: 514..553
score: 1.5
NoneNo IPR availableSUPERFAMILY56300Metallo-dependent phosphatasescoord: 227..568
score: 2.9
NoneNo IPR availableSEGsegsegcoord: 63..75
score
NoneNo IPR availableSEGsegsegcoord: 7..22
score: NAcoord: 73..85
score
NoneNo IPR availableSEGsegsegcoord: 32..45
score
NoneNo IPR availableSEGsegsegcoord: 59..75
score
NoneNo IPR availableSEGsegsegcoord: 8..25
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000874373 ID=MDP0000874373; Name=MDP0000874373; organism=Malus x domestica; type=mRNA; length=3558bp
ATGCGAATCGATTCGCAGCTCAAGTCACTCAACAAACGAACCCAACACGA
TATGATCAAACTTACTCACATTCCTCATCATCCCCAGCTAGAATTTTCAA
CCTCCATCTTCAATGCCATGCCGAACTGCATACCATGGGTCACTCTGATC
ATTTTCTTGACTGTAACAGAAATGGCGGTGGCACTGACTCAGTCTCCCAT
TCCCACCACTCTAGAAGGCCCGTTCGTGCCTGCAACTCGGCGCTTCGATC
CATCGCTTCGCAGAGGCAGTGATGACTTGCCAATGGACCATCCCAGGCTC
AAGAAGAAGGTGACATCAAATTTCCCAGAACAGATTGCCCTTGCTATTTC
TTCACCCACTGCAATGTGGGTTTCTTGGGTTACTGGTACAAAATTCAAAT
TCTCAATCTTTGTGTTGTTTTGTTGATTTTTTTTTTTTTTTTTTTTTTAC
ACTTTTCGGGATGAAAGTTGAATGGAATTGATGAACTGGGGTGGTTTTTG
TTTGGTCAGGGGATGCCCAGATTGGTAAAACTGTGAGACCACTTGATCCT
TCAACAGTTGGGAGTGAGGTGAGGTATGGGGAAGAAAGTGGCAAGTATAC
GAGTGTGAAGAAAGGGGTTTCAGTTGTTTATAGTCAATTGTACCCTTTTG
CTGGCCTCTTGAATTACACCTCTGCCATCATTCATCATGTCAGGATTGAT
GGTATGGAAATCAATTTTGATTCTTTTAGTTGTAATGACTTGTTGATTGT
TTGTTACTATAATGCACATAATGTTTTGCATCAGAAAATGGCAATCCGTT
TCAGCGGAATTGCTAGTGTTATTCTTAATTTGATCCAATCGTTTGCTTGG
AGGACAAGTTCTGATTTTAGTAAACGTAGCTTAATTGTTTGTACAACATC
CATAATCGTTTGTTCTGTGCCAAATAGTACTACGAACAGCCTCTTCCTTC
AGTTCGAGCATATACCCGAAAGAGAAAAAGAACCCTTAATTGAGTGAATT
TGTTATTGTTGAGTATAGAAAAATTCTGATATTGGTGGGTGAATCAAAAT
TTATTGTCAATTGATAATGGTGTTGACGGTTGCTCGATGTACCACATAAT
TCACTAATTACAGACATGGATTTGTAATCCCATTAATGAAACCTATAAGT
CCTATATTTCATGTTTCAATTTGAGGAAGCTCTCATCCCTTGGGGGTTGG
CATATTTAAACATTCTGTCAATTTACATCCTGAAAGAATTCTGATATATT
TGATTAAACTACTGTTAAATGGTAAATTTTGATATGAATGTCACAGGATG
GTCGTTTAGTTACATAATTGAACACCTAGTAGACGATAAGCGAAGAAACT
AGATCGAGTGTATCCGTACTGCTAAGATCAAGAGTTCCCCTTTGCTGTAG
GTCTTAAACCGGGTACGAAATATTATTACAAGTGTGGGGATAGTTCTATC
CCTGCTATGAGTCAAGAGCACGCCCTTGAAACTTTACCAGAGCCTGGCGA
AAACACATATCCTCGTCGAATAGCTGTCGTTGGAGATTTGGGTCTCACTA
GCAATACCAGTACAACCATTGATCATTTAATCCAGAATGATCCTTCAATG
ATTTTAATGGTTGGGGACTTATGTTATGCAAACCAGTACCGTACGACTGG
TGGGAAAGGAGCTTCATGCTTTTCATGTGCATTCCCAGATGCACCTATCA
GAGAAACATATCAACCCCGCTGGGATGGGTGGGGAAGGTAAACTTTATGA
ATTAGTATCTGAATGCCTTTACATCCTACCTCACTGTATGAGTTAGCATT
TGTTTCAGTTTATGTTGAAGATTTGTCACAGAAATTAAAATTTGTCAATG
TCAATCCATAATGTTAGTTAGCTAATCTGTTGGAGCTAAGTAGAAGCAAT
ATGTAATAAATGCTGATATCTTAATTCTKACCAGTTTGTGATGCTKCATT
TTCCTGAATTAGTTGGTTTTGATTAACATGGTTGAAGTGGAAACTCAGGT
TCATGGAGCCTTTAACCTCGAGAGTTCCTATGATGGTTATTGAGGGCAAC
CATGAGATTGAGCCCCAAGTTTCTGGAATCACTTTCGAATCCTATTTGAC
AAGATTTGCAGTGCCATCAGAGGAAKCCGGCTCTAAAAGTAACTTCTACT
ATTCTTTTGATGCTGGAGGAGTACATTTTATCATGTTGGGAGCATATATT
GACTACAATGCTACTGGTAATTGATGCCATAACGCTTCTTACTTATAAAT
TCGCTACTAATAATKACAAATGATAAATTTAAAACATTCTGGTTTGGCTC
TGCAATGCTGAATTATGAAAGCGTAAGCACYGGTGTACTTTTTTGGTACT
GTTGGTTTTTAATTGTTTGTTATGTCCTATCTATGTTCATTCTAGGTGCT
CAATATGCTTGGCTTAAAGATGATCTACATCGAGTAGACCGTACAGTGAC
TCCCTGGCTCGTAGCAGCATGGCACCCTCCTTGGTATAACAGCTATTCTT
CTCACTATCAGGAATTTGAATGCATGAGACAAGAAATGGAAGCACTTCTT
TATCAATATGGTGTTGATATTGTTTTTTCTGGTCATGTAAGTTTAAAGTG
ATTCTGTCTATAGTCTCGTAAACATTTGTATGCATATTTATTTGGCAAAA
TTTGCCAATTTCATGTTATRTCGCAATATGCTTCTGTAATAGCAATACAT
ATAACAGAAGTTACATCTGATTGATAACTACAGAGGTTTTTCTATACATG
ACGTTATATTGGAGCCAGATACAAGATACCATGGCAGACAATTCGAAGAG
GCCATAAAGATAAAAGTGGAAAACACCTTGTGATCTCACCATTGAAACTA
ATTTCTTTGTAGATGTTGAATGTGTAATATGCTATCTGCTGTGCAGGTGC
ATGCCTACGAACGGATGAATAGAGTATATAACTATACGTTGGATCCGTGC
GGGCCTCTTTACATAACAGTTGGAGATGGTGGAAATATTGAAGAAGTTGA
TGTTGATTTCGCTGATGACCCTGGAAAGTGTCCTTCAGCTGGAGACAACA
CACCGGAGTTTGGAGGGGTATGCCATTTGAACTTTTCTTCAGGGCCTGCT
AAAGGCAATTTTTGTTGGAGCAAACAGCCGGAGTGGAGTGCTTTTAGAGA
AAGCAGCTTTGGGCATGGAATTCTTGAGGTAAAACTTAGTAACATTGTTT
TTACTTCTCTAGTTAAACAAACTTATCTCACACAATGTTTGATTTTAATT
ATTAGTTTAACCATGATTAGCAAATGCAAATAGTACGTGTGCTTGAAACT
TGCTTCTGAGGTGCAAACCATGAAAGTAGAATAGATCTAAGCGCGATCTT
TCGTGATGTCTTCAGTGTTTTCTAGTTACACATTCATAACCGTCTTCCAT
GACCTTTATATATCGAAATGCAGGTTGTGAATTCTACTTATGCTCTATGG
ACTTGGCATCGGAATCAAGATACGTATAAGGAAGATAGCCACGGTGATCA
AGTATACATTGTGCGACAACCTGAACTGTGCTCACGGTCTGCAAAGGTGA
TTTCTTAA
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protein sequence of MDP0000874373

>MDP0000874373 ID=MDP0000874373; Name=MDP0000874373; organism=Malus x domestica; type=polypeptide; length=580bp
MRIDSQLKSLNKRTQHDMIKLTHIPHHPQLEFSTSIFNAMPNCIPWVTLI
IFLTVTEMAVALTQSPIPTTLEGPFVPATRRFDPSLRRGSDDLPMDHPRL
KKKVTSNFPEQIALAISSPTAMWVSWVTGDAQIGKTVRPLDPSTVGSEVR
YGEESGKYTSVKKGVSVVYSQLYPFAGLLNYTSAIIHHVRIDGLKPGTKY
YYKCGDSSIPAMSQEHALETLPEPGENTYPRRIAVVGDLGLTSNTSTTID
HLIQNDPSMILMVGDLCYANQYRTTGGKGASCFSCAFPDAPIRETYQPRW
DGWGRFMEPLTSRVPMMVIEGNHEIEPQVSGITFESYLTRFAVPSEEXGS
KSNFYYSFDAGGVHFIMLGAYIDYNATGAQYAWLKDDLHRVDRTVTPWLV
AAWHPPWYNSYSSHYQEFECMRQEMEALLYQYGVDIVFSGHVHAYERMNR
VYNYTLDPCGPLYITVGDGGNIEEVDVDFADDPGKCPSAGDNTPEFGGVC
HLNFSSGPAKGNFCWSKQPEWSAFRESSFGHGILEVVNSTYALWTWHRNQ
DTYKEDSHGDQVYIVRQPELCSRSAKVIS*
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mRNA from alignment at chr13:31499204..31502761+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000874373 ID=MDP0000874373; Name=MDP0000874373; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:31499204..31502761+ (Malus x domestica
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mRNA from alignment at MDC000782.427:1755..5312+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000874373 ID=MDP0000874373; Name=MDP0000874373; organism=Malus x domestica; type=mRNA; length=3558bp; location=Sequence derived from: MDC000782.427:1755..5312+ (Malus x domestica
ATGCGAATCGATTCGCAGCTCAAGTCACTCAACAAACGAACCCAACACGA TATGATCAAACTTACTCACATTCCTCATCATCCCCAGCTAGAATTTTCAA CCTCCATCTTCAATGCCATGCCGAACTGCATACCATGGGTCACTCTGATC ATTTTCTTGACTGTAACAGAAATGGCGGTGGCACTGACTCAGTCTCCCAT TCCCACCACTCTAGAAGGCCCGTTCGTGCCTGCAACTCGGCGCTTCGATC CATCGCTTCGCAGAGGCAGTGATGACTTGCCAATGGACCATCCCAGGCTC AAGAAGAAGGTGACATCAAATTTCCCAGAACAGATTGCCCTTGCTATTTC TTCACCCACTGCAATGTGGGTTTCTTGGGTTACTGGTACAAAATTCAAAT TCTCAATCTTTGTGTTGTTTTGTTGATTTTTTTTTTTTTTTTTTTTTTAC ACTTTTCGGGATGAAAGTTGAATGGAATTGATGAACTGGGGTGGTTTTTG TTTGGTCAGGGGATGCCCAGATTGGTAAAACTGTGAGACCACTTGATCCT TCAACAGTTGGGAGTGAGGTGAGGTATGGGGAAGAAAGTGGCAAGTATAC GAGTGTGAAGAAAGGGGTTTCAGTTGTTTATAGTCAATTGTACCCTTTTG CTGGCCTCTTGAATTACACCTCTGCCATCATTCATCATGTCAGGATTGAT GGTATGGAAATCAATTTTGATTCTTTTAGTTGTAATGACTTGTTGATTGT TTGTTACTATAATGCACATAATGTTTTGCATCAGAAAATGGCAATCCGTT TCAGCGGAATTGCTAGTGTTATTCTTAATTTGATCCAATCGTTTGCTTGG AGGACAAGTTCTGATTTTAGTAAACGTAGCTTAATTGTTTGTACAACATC CATAATCGTTTGTTCTGTGCCAAATAGTACTACGAACAGCCTCTTCCTTC AGTTCGAGCATATACCCGAAAGAGAAAAAGAACCCTTAATTGAGTGAATT TGTTATTGTTGAGTATAGAAAAATTCTGATATTGGTGGGTGAATCAAAAT TTATTGTCAATTGATAATGGTGTTGACGGTTGCTCGATGTACCACATAAT TCACTAATTACAGACATGGATTTGTAATCCCATTAATGAAACCTATAAGT CCTATATTTCATGTTTCAATTTGAGGAAGCTCTCATCCCTTGGGGGTTGG CATATTTAAACATTCTGTCAATTTACATCCTGAAAGAATTCTGATATATT TGATTAAACTACTGTTAAATGGTAAATTTTGATATGAATGTCACAGGATG GTCGTTTAGTTACATAATTGAACACCTAGTAGACGATAAGCGAAGAAACT AGATCGAGTGTATCCGTACTGCTAAGATCAAGAGTTCCCCTTTGCTGTAG GTCTTAAACCGGGTACGAAATATTATTACAAGTGTGGGGATAGTTCTATC CCTGCTATGAGTCAAGAGCACGCCCTTGAAACTTTACCAGAGCCTGGCGA AAACACATATCCTCGTCGAATAGCTGTCGTTGGAGATTTGGGTCTCACTA GCAATACCAGTACAACCATTGATCATTTAATCCAGAATGATCCTTCAATG ATTTTAATGGTTGGGGACTTATGTTATGCAAACCAGTACCGTACGACTGG TGGGAAAGGAGCTTCATGCTTTTCATGTGCATTCCCAGATGCACCTATCA GAGAAACATATCAACCCCGCTGGGATGGGTGGGGAAGGTAAACTTTATGA ATTAGTATCTGAATGCCTTTACATCCTACCTCACTGTATGAGTTAGCATT TGTTTCAGTTTATGTTGAAGATTTGTCACAGAAATTAAAATTTGTCAATG TCAATCCATAATGTTAGTTAGCTAATCTGTTGGAGCTAAGTAGAAGCAAT ATGTAATAAATGCTGATATCTTAATTCTKACCAGTTTGTGATGCTKCATT TTCCTGAATTAGTTGGTTTTGATTAACATGGTTGAAGTGGAAACTCAGGT TCATGGAGCCTTTAACCTCGAGAGTTCCTATGATGGTTATTGAGGGCAAC CATGAGATTGAGCCCCAAGTTTCTGGAATCACTTTCGAATCCTATTTGAC AAGATTTGCAGTGCCATCAGAGGAAKCCGGCTCTAAAAGTAACTTCTACT ATTCTTTTGATGCTGGAGGAGTACATTTTATCATGTTGGGAGCATATATT GACTACAATGCTACTGGTAATTGATGCCATAACGCTTCTTACTTATAAAT TCGCTACTAATAATKACAAATGATAAATTTAAAACATTCTGGTTTGGCTC TGCAATGCTGAATTATGAAAGCGTAAGCACYGGTGTACTTTTTTGGTACT GTTGGTTTTTAATTGTTTGTTATGTCCTATCTATGTTCATTCTAGGTGCT CAATATGCTTGGCTTAAAGATGATCTACATCGAGTAGACCGTACAGTGAC TCCCTGGCTCGTAGCAGCATGGCACCCTCCTTGGTATAACAGCTATTCTT CTCACTATCAGGAATTTGAATGCATGAGACAAGAAATGGAAGCACTTCTT TATCAATATGGTGTTGATATTGTTTTTTCTGGTCATGTAAGTTTAAAGTG ATTCTGTCTATAGTCTCGTAAACATTTGTATGCATATTTATTTGGCAAAA TTTGCCAATTTCATGTTATRTCGCAATATGCTTCTGTAATAGCAATACAT ATAACAGAAGTTACATCTGATTGATAACTACAGAGGTTTTTCTATACATG ACGTTATATTGGAGCCAGATACAAGATACCATGGCAGACAATTCGAAGAG GCCATAAAGATAAAAGTGGAAAACACCTTGTGATCTCACCATTGAAACTA ATTTCTTTGTAGATGTTGAATGTGTAATATGCTATCTGCTGTGCAGGTGC ATGCCTACGAACGGATGAATAGAGTATATAACTATACGTTGGATCCGTGC GGGCCTCTTTACATAACAGTTGGAGATGGTGGAAATATTGAAGAAGTTGA TGTTGATTTCGCTGATGACCCTGGAAAGTGTCCTTCAGCTGGAGACAACA CACCGGAGTTTGGAGGGGTATGCCATTTGAACTTTTCTTCAGGGCCTGCT AAAGGCAATTTTTGTTGGAGCAAACAGCCGGAGTGGAGTGCTTTTAGAGA AAGCAGCTTTGGGCATGGAATTCTTGAGGTAAAACTTAGTAACATTGTTT TTACTTCTCTAGTTAAACAAACTTATCTCACACAATGTTTGATTTTAATT ATTAGTTTAACCATGATTAGCAAATGCAAATAGTACGTGTGCTTGAAACT TGCTTCTGAGGTGCAAACCATGAAAGTAGAATAGATCTAAGCGCGATCTT TCGTGATGTCTTCAGTGTTTTCTAGTTACACATTCATAACCGTCTTCCAT GACCTTTATATATCGAAATGCAGGTTGTGAATTCTACTTATGCTCTATGG ACTTGGCATCGGAATCAAGATACGTATAAGGAAGATAGCCACGGTGATCA AGTATACATTGTGCGACAACCTGAACTGTGCTCACGGTCTGCAAAGGTGA TTTCTTAA
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Coding sequence (CDS) from alignment at MDC000782.427:1755..5312+

>MDP0000874373 ID=MDP0000874373; Name=MDP0000874373; organism=Malus x domestica; type=CDS; length=1740bp; location=Sequence derived from: MDC000782.427:1755..5312+ (Malus x domestica
ATGCGAATCGATTCGCAGCTCAAGTCACTCAACAAACGAACCCAACACGA
TATGATCAAACTTACTCACATTCCTCATCATCCCCAGCTAGAATTTTCAA
CCTCCATCTTCAATGCCATGCCGAACTGCATACCATGGGTCACTCTGATC
ATTTTCTTGACTGTAACAGAAATGGCGGTGGCACTGACTCAGTCTCCCAT
TCCCACCACTCTAGAAGGCCCGTTCGTGCCTGCAACTCGGCGCTTCGATC
CATCGCTTCGCAGAGGCAGTGATGACTTGCCAATGGACCATCCCAGGCTC
AAGAAGAAGGTGACATCAAATTTCCCAGAACAGATTGCCCTTGCTATTTC
TTCACCCACTGCAATGTGGGTTTCTTGGGTTACTGGGGATGCCCAGATTG
GTAAAACTGTGAGACCACTTGATCCTTCAACAGTTGGGAGTGAGGTGAGG
TATGGGGAAGAAAGTGGCAAGTATACGAGTGTGAAGAAAGGGGTTTCAGT
TGTTTATAGTCAATTGTACCCTTTTGCTGGCCTCTTGAATTACACCTCTG
CCATCATTCATCATGTCAGGATTGATGGTCTTAAACCGGGTACGAAATAT
TATTACAAGTGTGGGGATAGTTCTATCCCTGCTATGAGTCAAGAGCACGC
CCTTGAAACTTTACCAGAGCCTGGCGAAAACACATATCCTCGTCGAATAG
CTGTCGTTGGAGATTTGGGTCTCACTAGCAATACCAGTACAACCATTGAT
CATTTAATCCAGAATGATCCTTCAATGATTTTAATGGTTGGGGACTTATG
TTATGCAAACCAGTACCGTACGACTGGTGGGAAAGGAGCTTCATGCTTTT
CATGTGCATTCCCAGATGCACCTATCAGAGAAACATATCAACCCCGCTGG
GATGGGTGGGGAAGGTTCATGGAGCCTTTAACCTCGAGAGTTCCTATGAT
GGTTATTGAGGGCAACCATGAGATTGAGCCCCAAGTTTCTGGAATCACTT
TCGAATCCTATTTGACAAGATTTGCAGTGCCATCAGAGGAAKCCGGCTCT
AAAAGTAACTTCTACTATTCTTTTGATGCTGGAGGAGTACATTTTATCAT
GTTGGGAGCATATATTGACTACAATGCTACTGGTGCTCAATATGCTTGGC
TTAAAGATGATCTACATCGAGTAGACCGTACAGTGACTCCCTGGCTCGTA
GCAGCATGGCACCCTCCTTGGTATAACAGCTATTCTTCTCACTATCAGGA
ATTTGAATGCATGAGACAAGAAATGGAAGCACTTCTTTATCAATATGGTG
TTGATATTGTTTTTTCTGGTCATGTGCATGCCTACGAACGGATGAATAGA
GTATATAACTATACGTTGGATCCGTGCGGGCCTCTTTACATAACAGTTGG
AGATGGTGGAAATATTGAAGAAGTTGATGTTGATTTCGCTGATGACCCTG
GAAAGTGTCCTTCAGCTGGAGACAACACACCGGAGTTTGGAGGGGTATGC
CATTTGAACTTTTCTTCAGGGCCTGCTAAAGGCAATTTTTGTTGGAGCAA
ACAGCCGGAGTGGAGTGCTTTTAGAGAAAGCAGCTTTGGGCATGGAATTC
TTGAGGTTGTGAATTCTACTTATGCTCTATGGACTTGGCATCGGAATCAA
GATACGTATAAGGAAGATAGCCACGGTGATCAAGTATACATTGTGCGACA
ACCTGAACTGTGCTCACGGTCTGCAAAGGTGATTTCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR004843Calcineurin-like_PHP_ApaH
IPR008963Purple_acid_Pase-like_N
IPR015914Purple_acid_Pase_N
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003993acid phosphatase activity
GO:0046872metal ion binding