MDP0000911947, MDP0000911947 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000911947
Unique Name	MDP0000911947
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	2049

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr5	chromosome	chr5:28791193..28793241 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC002820.150	contig	MDC002820.150:47111..49159 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000911947_exon_1	MDP0000911947_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000911947	MDP0000911947	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 148..173 score: 0.0026coord: 520..544 score:
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 173..219 score: 2.5e-12coord: 274..322 score: 1.1e-11coord: 376..423 score: 2.6
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	PPR: pentatricopeptide repeat domain	coord: 148..174 score: 0.00032coord: 176..209 score: 6.3e-07coord: 277..310 score: 4.5e-05coord: 350..378 score: 1.4e-06coord: 378..411 score: 0.0
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 108..142 score: 6.566coord: 174..208 score: 12.781coord: 143..173 score: 8.572coord: 275..309 score: 11.904coord: 244..274 score: 6.829coord: 376..410 score: 11.926coord: 345..375 score: 8.802coord: 310..344 score: 8.177coord: 411..445 score: 9.339coord: 446..480 score: 6.259coord: 512..546 score: 7
IPR011990	Tetratricopeptide-like helical	GENE3D	1.25.40.10	no description	coord: 349..421 score: 1.1
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 104..678 score: 2.2e
None	No IPR available	PANTHER	PTHR24015:SF80	SUBFAMILY NOT NAMED	coord: 104..678 score: 2.2e
None	No IPR available	PFAM	PF14432	DYW_deaminase	coord: 555..672 score: 2.2
None	No IPR available	SEG	seg	seg	coord: 60..70 score
None	No IPR available	SEG	seg	seg	coord: 73..86 score
None	No IPR available	SEG	seg	seg	coord: 33..43 score
None	No IPR available	SEG	seg	seg	coord: 32..44 score
None	No IPR available	SEG	seg	seg	coord: 25..35 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:28791193..28793241-
mRNA from alignment at MDC002820.150:47111..49159-
coding sequence from alignment at MDC002820.150:47111..49159-

mRNA sequence

>MDP0000911947 ID=MDP0000911947; Name=MDP0000911947; organism=Malus x domestica; type=mRNA; length=2049bp
ATGAACCGATGTAATCTAATGAAGAGACATATTTTGGGAAGTCGATCCAA
GGCTTTGCTGTTTCTGTACAACTACAACAATACTGCCGCTGCTGTTGGCA
TTCAAAAACTCTTCTCGTTATCGGCACGGTTTGGGACATTGTCTGCAACT
CGGGCTTCATGCGCCAAACTAATTGGGGATGAAGACTCTGAAACTTCAGA
AGACGAAGACTGGTTTCCTTCTCGTATCATCCAAGACAAGGACCTTCTCC
GCAGCAGCCCCCATATTTCAGGAACAGGGCTTCATGTTCTTGACTTGGTG
AATTGTGGTTCTTTGGAAGCAGACCGGACTCTGTACAATAAGCTGCTACA
CCGGTGCACCCAGACGGCCCAACTTAAACAAGCCAGAATTGTGCATTCAC
ACATCCTTACTTCTCAATTTAAAGATGACCTTCCCATCCGCAACACCATC
CTTCACATGTATGTCAAATGTGGCAGTTTGGACGATGCTCGCAACCTGTT
CAATCAAATGCCTCACAAGGATTTGGTCACTTGGACTGCCTTGATTTCTG
GCTATTCTCAACATGATCGACCTCAGGATGCCCTTGTTTTGTTTCCTGAG
ATGCTCCGCCATGGGCTGGAACCCAACCAGTTCACCTTGTCTAGCTTGTT
GAAAGCTTCTGGCGCTGTCTCTGATGACAATCATGGCAGGCAGCTTCACA
CTTATTGCTTTAAGTACGGTCTTGATTCCAATGTCTATGTGGGCACTGCT
CTTGTGGACATGTATGCTAGGTGTGGTCATATGGATGAATCCCAATTGGT
CTTTGACGCCTTGGACACCAAGAATGAGGTGTCCTGGAATGCTTTGATTG
CTGGGCATGCTAGGAAGGCTCAAGGAGAGCATGCACTCAGGTTGTTCTGG
AAGATGCTGAGGGAGGGCTTCAAACCTACGCATTTCACTTATTCTAGCGT
CTTGACTGCTTGTGCTAGTGCAGGGTCTCTAGAGCAAGGGAAGTGGGTTC
ACGCCCACATGATCAAATCAGTTGTTACCCTCGTCGCTTTTGTGGGGAAT
ACTCTTCTCGATATGTATGCCAAATCAGGCAGCATTGAGGATGCAAAAAA
GGTTTTTGATAGGATGGTTAGACGAGACGTCGTTTCTTGGAATTCGATGC
TTACTGGATATGCCCAGCATGGGTTTGGAAAGGAAACTGTGCAACGGTTT
GAAGAAATGCTGAGAATTGGAATCCAACCTAATGATATAACCTTTCTTTG
TGTTCTTACTGCCTGTAGCCATGCCGGTCTCTTGGATGAAGGACAATATT
ATTTTGACTTGATGAAACAGTACAACATAGAACCACAGGTTTCACACTAT
GTGACGATTGTTGATCTTCTTGGTCGTGGAAATCTGCTTGATCGAGCTGA
GAAGTTCATAAGAGAAATGCCGATTGAACCCACTGCAGCTGTTTGGGGAG
CCTTATTAGGTGCTTGCAGGATGCACAAGAACATAGAGTTGGGTGCTTAT
GCTGCGGAACGTAGTTTTGAGCTGGATCCCCATGATTCAGGGCCCCATGT
CATACTTTCTAATATCTATGCCTCTGCTGGCAGATGGATTGACGCAGCAA
AGGTGAGGAAGATGATGAAAGAGGGTGGGGTGAAAAAGGAACCTGCTTGT
AGCTGGGTGGACATCGAGAATGCGGTCCACATGTTTGTAGCGAACGATGA
TGCTCATCCGCAAAGGGTAGAGATCCTTAGGATGTGGGAGATGATTAGCA
TGAAGATAAAGGAGGTTGGATACGTCCCAGACACTAGCCACGTACTTTTC
TATGTAGACCAGCAGGAGAGGGAAGTCAAGTTGCAGTACCATAGTGAGAA
GCTTGCTCTAGCATTTGCGGTTCTTAACACTCCTCCTGGCTCCACCATAC
GGATTAAGAAGAACATCAGGGTTTGTGGTGATTGTCATTCAGCAATCAAG
TTCGTTTCGAAGGTAGAAGGGAGAGAAATCATTGTGAGGGACACCAATCG
GTTCCATCATTTCCGTGATGGCTCTTGTTCTTGTGGGGACTATTGGTAG

protein sequence of MDP0000911947

>MDP0000911947 ID=MDP0000911947; Name=MDP0000911947; organism=Malus x domestica; type=polypeptide; length=683bp
MNRCNLMKRHILGSRSKALLFLYNYNNTAAAVGIQKLFSLSARFGTLSAT
RASCAKLIGDEDSETSEDEDWFPSRIIQDKDLLRSSPHISGTGLHVLDLV
NCGSLEADRTLYNKLLHRCTQTAQLKQARIVHSHILTSQFKDDLPIRNTI
LHMYVKCGSLDDARNLFNQMPHKDLVTWTALISGYSQHDRPQDALVLFPE
MLRHGLEPNQFTLSSLLKASGAVSDDNHGRQLHTYCFKYGLDSNVYVGTA
LVDMYARCGHMDESQLVFDALDTKNEVSWNALIAGHARKAQGEHALRLFW
KMLREGFKPTHFTYSSVLTACASAGSLEQGKWVHAHMIKSVVTLVAFVGN
TLLDMYAKSGSIEDAKKVFDRMVRRDVVSWNSMLTGYAQHGFGKETVQRF
EEMLRIGIQPNDITFLCVLTACSHAGLLDEGQYYFDLMKQYNIEPQVSHY
VTIVDLLGRGNLLDRAEKFIREMPIEPTAAVWGALLGACRMHKNIELGAY
AAERSFELDPHDSGPHVILSNIYASAGRWIDAAKVRKMMKEGGVKKEPAC
SWVDIENAVHMFVANDDAHPQRVEILRMWEMISMKIKEVGYVPDTSHVLF
YVDQQEREVKLQYHSEKLALAFAVLNTPPGSTIRIKKNIRVCGDCHSAIK
FVSKVEGREIIVRDTNRFHHFRDGSCSCGDYW*

mRNA from alignment at chr5:28791193..28793241-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000911947 ID=MDP0000911947; Name=MDP0000911947; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr5:28791193..28793241- (Malus x domestica

mRNA from alignment at MDC002820.150:47111..49159-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000911947 ID=MDP0000911947; Name=MDP0000911947; organism=Malus x domestica; type=mRNA; length=2049bp; location=Sequence derived from: MDC002820.150:47111..49159- (Malus x domestica
ATGAACCGATGTAATCTAATGAAGAGACATATTTTGGGAAGTCGATCCAA
GGCTTTGCTGTTTCTGTACAACTACAACAATACTGCCGCTGCTGTTGGCA
TTCAAAAACTCTTCTCGTTATCGGCACGGTTTGGGACATTGTCTGCAACT
CGGGCTTCATGCGCCAAACTAATTGGGGATGAAGACTCTGAAACTTCAGA
AGACGAAGACTGGTTTCCTTCTCGTATCATCCAAGACAAGGACCTTCTCC
GCAGCAGCCCCCATATTTCAGGAACAGGGCTTCATGTTCTTGACTTGGTG
AATTGTGGTTCTTTGGAAGCAGACCGGACTCTGTACAATAAGCTGCTACA
CCGGTGCACCCAGACGGCCCAACTTAAACAAGCCAGAATTGTGCATTCAC
ACATCCTTACTTCTCAATTTAAAGATGACCTTCCCATCCGCAACACCATC
CTTCACATGTATGTCAAATGTGGCAGTTTGGACGATGCTCGCAACCTGTT
CAATCAAATGCCTCACAAGGATTTGGTCACTTGGACTGCCTTGATTTCTG
GCTATTCTCAACATGATCGACCTCAGGATGCCCTTGTTTTGTTTCCTGAG
ATGCTCCGCCATGGGCTGGAACCCAACCAGTTCACCTTGTCTAGCTTGTT
GAAAGCTTCTGGCGCTGTCTCTGATGACAATCATGGCAGGCAGCTTCACA
CTTATTGCTTTAAGTACGGTCTTGATTCCAATGTCTATGTGGGCACTGCT
CTTGTGGACATGTATGCTAGGTGTGGTCATATGGATGAATCCCAATTGGT
CTTTGACGCCTTGGACACCAAGAATGAGGTGTCCTGGAATGCTTTGATTG
CTGGGCATGCTAGGAAGGCTCAAGGAGAGCATGCACTCAGGTTGTTCTGG
AAGATGCTGAGGGAGGGCTTCAAACCTACGCATTTCACTTATTCTAGCGT
CTTGACTGCTTGTGCTAGTGCAGGGTCTCTAGAGCAAGGGAAGTGGGTTC
ACGCCCACATGATCAAATCAGTTGTTACCCTCGTCGCTTTTGTGGGGAAT
ACTCTTCTCGATATGTATGCCAAATCAGGCAGCATTGAGGATGCAAAAAA
GGTTTTTGATAGGATGGTTAGACGAGACGTCGTTTCTTGGAATTCGATGC
TTACTGGATATGCCCAGCATGGGTTTGGAAAGGAAACTGTGCAACGGTTT
GAAGAAATGCTGAGAATTGGAATCCAACCTAATGATATAACCTTTCTTTG
TGTTCTTACTGCCTGTAGCCATGCCGGTCTCTTGGATGAAGGACAATATT
ATTTTGACTTGATGAAACAGTACAACATAGAACCACAGGTTTCACACTAT
GTGACGATTGTTGATCTTCTTGGTCGTGGAAATCTGCTTGATCGAGCTGA
GAAGTTCATAAGAGAAATGCCGATTGAACCCACTGCAGCTGTTTGGGGAG
CCTTATTAGGTGCTTGCAGGATGCACAAGAACATAGAGTTGGGTGCTTAT
GCTGCGGAACGTAGTTTTGAGCTGGATCCCCATGATTCAGGGCCCCATGT
CATACTTTCTAATATCTATGCCTCTGCTGGCAGATGGATTGACGCAGCAA
AGGTGAGGAAGATGATGAAAGAGGGTGGGGTGAAAAAGGAACCTGCTTGT
AGCTGGGTGGACATCGAGAATGCGGTCCACATGTTTGTAGCGAACGATGA
TGCTCATCCGCAAAGGGTAGAGATCCTTAGGATGTGGGAGATGATTAGCA
TGAAGATAAAGGAGGTTGGATACGTCCCAGACACTAGCCACGTACTTTTC
TATGTAGACCAGCAGGAGAGGGAAGTCAAGTTGCAGTACCATAGTGAGAA
GCTTGCTCTAGCATTTGCGGTTCTTAACACTCCTCCTGGCTCCACCATAC
GGATTAAGAAGAACATCAGGGTTTGTGGTGATTGTCATTCAGCAATCAAG
TTCGTTTCGAAGGTAGAAGGGAGAGAAATCATTGTGAGGGACACCAATCG
GTTCCATCATTTCCGTGATGGCTCTTGTTCTTGTGGGGACTATTGGTAG

Coding sequence (CDS) from alignment at MDC002820.150:47111..49159-

>MDP0000911947 ID=MDP0000911947; Name=MDP0000911947; organism=Malus x domestica; type=CDS; length=2049bp; location=Sequence derived from: MDC002820.150:47111..49159- (Malus x domestica
ATGAACCGATGTAATCTAATGAAGAGACATATTTTGGGAAGTCGATCCAA
GGCTTTGCTGTTTCTGTACAACTACAACAATACTGCCGCTGCTGTTGGCA
TTCAAAAACTCTTCTCGTTATCGGCACGGTTTGGGACATTGTCTGCAACT
CGGGCTTCATGCGCCAAACTAATTGGGGATGAAGACTCTGAAACTTCAGA
AGACGAAGACTGGTTTCCTTCTCGTATCATCCAAGACAAGGACCTTCTCC
GCAGCAGCCCCCATATTTCAGGAACAGGGCTTCATGTTCTTGACTTGGTG
AATTGTGGTTCTTTGGAAGCAGACCGGACTCTGTACAATAAGCTGCTACA
CCGGTGCACCCAGACGGCCCAACTTAAACAAGCCAGAATTGTGCATTCAC
ACATCCTTACTTCTCAATTTAAAGATGACCTTCCCATCCGCAACACCATC
CTTCACATGTATGTCAAATGTGGCAGTTTGGACGATGCTCGCAACCTGTT
CAATCAAATGCCTCACAAGGATTTGGTCACTTGGACTGCCTTGATTTCTG
GCTATTCTCAACATGATCGACCTCAGGATGCCCTTGTTTTGTTTCCTGAG
ATGCTCCGCCATGGGCTGGAACCCAACCAGTTCACCTTGTCTAGCTTGTT
GAAAGCTTCTGGCGCTGTCTCTGATGACAATCATGGCAGGCAGCTTCACA
CTTATTGCTTTAAGTACGGTCTTGATTCCAATGTCTATGTGGGCACTGCT
CTTGTGGACATGTATGCTAGGTGTGGTCATATGGATGAATCCCAATTGGT
CTTTGACGCCTTGGACACCAAGAATGAGGTGTCCTGGAATGCTTTGATTG
CTGGGCATGCTAGGAAGGCTCAAGGAGAGCATGCACTCAGGTTGTTCTGG
AAGATGCTGAGGGAGGGCTTCAAACCTACGCATTTCACTTATTCTAGCGT
CTTGACTGCTTGTGCTAGTGCAGGGTCTCTAGAGCAAGGGAAGTGGGTTC
ACGCCCACATGATCAAATCAGTTGTTACCCTCGTCGCTTTTGTGGGGAAT
ACTCTTCTCGATATGTATGCCAAATCAGGCAGCATTGAGGATGCAAAAAA
GGTTTTTGATAGGATGGTTAGACGAGACGTCGTTTCTTGGAATTCGATGC
TTACTGGATATGCCCAGCATGGGTTTGGAAAGGAAACTGTGCAACGGTTT
GAAGAAATGCTGAGAATTGGAATCCAACCTAATGATATAACCTTTCTTTG
TGTTCTTACTGCCTGTAGCCATGCCGGTCTCTTGGATGAAGGACAATATT
ATTTTGACTTGATGAAACAGTACAACATAGAACCACAGGTTTCACACTAT
GTGACGATTGTTGATCTTCTTGGTCGTGGAAATCTGCTTGATCGAGCTGA
GAAGTTCATAAGAGAAATGCCGATTGAACCCACTGCAGCTGTTTGGGGAG
CCTTATTAGGTGCTTGCAGGATGCACAAGAACATAGAGTTGGGTGCTTAT
GCTGCGGAACGTAGTTTTGAGCTGGATCCCCATGATTCAGGGCCCCATGT
CATACTTTCTAATATCTATGCCTCTGCTGGCAGATGGATTGACGCAGCAA
AGGTGAGGAAGATGATGAAAGAGGGTGGGGTGAAAAAGGAACCTGCTTGT
AGCTGGGTGGACATCGAGAATGCGGTCCACATGTTTGTAGCGAACGATGA
TGCTCATCCGCAAAGGGTAGAGATCCTTAGGATGTGGGAGATGATTAGCA
TGAAGATAAAGGAGGTTGGATACGTCCCAGACACTAGCCACGTACTTTTC
TATGTAGACCAGCAGGAGAGGGAAGTCAAGTTGCAGTACCATAGTGAGAA
GCTTGCTCTAGCATTTGCGGTTCTTAACACTCCTCCTGGCTCCACCATAC
GGATTAAGAAGAACATCAGGGTTTGTGGTGATTGTCATTCAGCAATCAAG
TTCGTTTCGAAGGTAGAAGGGAGAGAAATCATTGTGAGGGACACCAATCG
GTTCCATCATTTCCGTGATGGCTCTTGTTCTTGTGGGGACTATTGGTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_rpt
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding