MDP0000923670, MDP0000923670 (mRNA) Malus spp. (apple)

Transcript Overview


Name	MDP0000923670
Unique Name	MDP0000923670
Type	mRNA
Organism	Malus x domestica (Apple)
Sequence length	3955

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
chr4	chromosome	chr4:19873253..19877207 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
MDC022765.170	contig	MDC022765.170:3462..7416 -	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation	2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA	2012-07-23
KEGG/KAAS of Malus x domestica Whole Genome v1.0	2012-04-02

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000923670_exon_9	MDP0000923670_exon_9	Malus x domestica	CDS
MDP0000923670_exon_8	MDP0000923670_exon_8	Malus x domestica	CDS
MDP0000923670_exon_7	MDP0000923670_exon_7	Malus x domestica	CDS
MDP0000923670_exon_6	MDP0000923670_exon_6	Malus x domestica	CDS
MDP0000923670_exon_5	MDP0000923670_exon_5	Malus x domestica	CDS
MDP0000923670_exon_4	MDP0000923670_exon_4	Malus x domestica	CDS
MDP0000923670_exon_3	MDP0000923670_exon_3	Malus x domestica	CDS
MDP0000923670_exon_2	MDP0000923670_exon_2	Malus x domestica	CDS
MDP0000923670_exon_1	MDP0000923670_exon_1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MDP0000923670	MDP0000923670	Malus x domestica	polypeptide

InterPro

Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000907	Lipoxygenase	PANTHER	PTHR11771	FAMILY NOT NAMED	coord: 117.
IPR001024	Lipoxygenase, LH2	GENE3D	2.60.60.20	no description	coord: 91..243 score: 3.4
IPR001024	Lipoxygenase, LH2	PFAM	PF01477	PLAT	coord: 138..229 score: 6.4
IPR001024	Lipoxygenase, LH2	SMART	SM00308	Lipoxygenase homology 2 (beta barrel) domain	coord: 88..231 score: 2.3
IPR001024	Lipoxygenase, LH2	PROFILE	PS50095	PLAT	coord: 90..230 score: 24
IPR001246	Lipoxygenase, plant	PRINTS	PR00468	PLTLPOXGNASE	coord: 200..218 score: 5.5e-88coord: 226..247 score: 5.5e-88coord: 268..284 score: 5.5e-88coord: 301..320 score: 5.5e-88coord: 371..392 score: 5.5e-88coord: 419..435 score: 5.5e-88coord: 458..477 score: 5.5e-88coord: 524..548 score: 5.5e-88coord: 846..860 score: 5.5
IPR008976	Lipase/lipooxygenase, PLAT/LH2	SUPERFAMILY	49723	Lipase/lipooxygenase domain (PLAT/LH2 domain)	coord: 88..234 score: 3.1
IPR013819	Lipoxygenase, C-terminal	PRINTS	PR00087	LIPOXYGENASE	coord: 571..588 score: 2.3e-23coord: 589..606 score: 2.3e-23coord: 609..629 score: 2.3
IPR013819	Lipoxygenase, C-terminal	PFAM	PF00305	Lipoxygenase	coord: 242.
IPR013819	Lipoxygenase, C-terminal	PROFILE	PS51393	LIPOXYGENASE_3	coord: 233..933 score: 303
IPR013819	Lipoxygenase, C-terminal	SUPERFAMILY	48484	Lipoxigenase	coord: 235..933 score: 1.1e
IPR020834	Lipoxygenase, conserved site	PROSITE	PS00081	LIPOXYGENASE_2	coord: 616..626 score
None	No IPR available	COIL	coil	coiled-coil	coord: 877..902 score
None	No IPR available	GENE3D	1.20.245.10	no description	coord: 588..933 score: 3.5e
None	No IPR available	GENE3D	3.10.450.60	no description	coord: 452..585 score: 2.5
None	No IPR available	GENE3D	4.10.372.10	no description	coord: 365..450 score: 7.2
None	No IPR available	GENE3D	4.10.375.10	no description	coord: 244..341 score: 9.4
None	No IPR available	PANTHER	PTHR11771:SF2	LIPOXYGENASE	coord: 117.
None	No IPR available	SEG	seg	seg	coord: 80..91 score: NAcoord: 776..788 score
None	No IPR available	SEG	seg	seg	coord: 31..41 score
None	No IPR available	SEG	seg	seg	coord: 30..43 score
None	No IPR available	SEG	seg	seg	coord: 29..37 score: NAcoord: 53..64 score
None	No IPR available	SEG	seg	seg	coord: 39..50 score
None	No IPR available	SEG	seg	seg	coord: 13..37 score
None	No IPR available	SEG	seg	seg	coord: 30..47 score
None	No IPR available	SEG	seg	seg	coord: 2..25 score

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr4:19873253..19877207-
mRNA from alignment at MDC022765.170:3462..7416-
coding sequence from alignment at MDC022765.170:3462..7416-

mRNA sequence

>MDP0000923670 ID=MDP0000923670; Name=MDP0000923670; organism=Malus x domestica; type=mRNA; length=3955bp
ATGATGCTTCGTGCTCATCTTAAGCATCTCAGTCCCTTGAACTCAGTTGT
TGCAGCAGCAGCAAAAACCACCAATCCAGATCGTGCCACGTCAGTCAATG
GCAGACCAGGGTTGCTCCAAACGACTGGTCCAATGAAACTACTCCCCGCC
GGTTTCTTGTGCATGACTGATGTGGCAAAATCTCAGCCGTTAACTGTGGT
TTCATCAACTGCCAAGCCATCCCAGAACATCACCGTTGATCATCACCCAA
AAGATGACGACAAGAAGATCAAAGGGACGGTGGTGTTGATGAAGAAGAAT
GTTTTGGAGCTCAACGACCTCAAAGCTTCATTTCTTGATCGTTTCCATGA
GCTGCGGGGTAAAAAAGTTTCACTGCAGCTCATTAGTTCTGTTAATTGCG
ACCCTGGTAAGAATTTTATTACTAATTTACTTATTTTTAAGTTCACATAT
TACGTGCATTTTTAGTTTTATGGTTTACTTTTTATTTAATTAGTTTATTA
GCTTCAGTTCACAAATATTTGATATTATGGTGCCAAGTAGGTAAATTATT
AGTAATGGTTCAGATTTTTTATTTATTTTTTTGTTACAAAGGAGGTTTCA
AACCCTGAATCTCTAGCCTACTGATACTCATCGCCTTAGTTGCTCCGGTT
TTTTGTGTTAAGAAAACAAATTTGGAGGAATTATAATCCAAAATTTTCGG
CTTTTAACTTGATATGTTATTGTAGAAAATGGGTTGCAAGGAAAGGTTGG
AAAGGCAGCATATTTGGAAGATTGGATTACCAAAATCACTCCTTTAACAG
CTGAGGAGAATGCATTTGACATTACTTTCGATTGGGACGAGGAGATTGGA
GTCCCGGGAGCATTTATAATTAGAAATGAGCATCACAGTGAGTTCTACTT
GAAGTCTCTCACACTCGAAGATGTTCCTGGCGAAGGTCGAGTCCACTTTG
TTTGCAACTCGTGGGTGTACCCTGCTAAAAAGTACAAAAAGGACCGTGTT
TTCTTTGCTAACAAGGTAAACAAATTATGTTTTAGCTGATAGACTGCTTT
GTTATGCTAGAAATAATGAGAAGGTTCGTTTCAATTGCTCAATAGTCTCC
GGTACAGCTACACGTAGGGTTTACGAATTGTATGCTGAAGTAACCAATTG
AACTATAAATTTGCGCAGACGTATCTTTCAAGTGATACACCAGTGCCATT
ACAGAAGTTCAGAGAAGAAGAGCTCGAAAACTTGAGAGGAGACGACGATG
ATGAAAAAAGAGAGCTTGAGGAATGGGACAGGGTTTATGGCTATGCCTAC
TACAATGATTTGGGRAAACCAGATAAGGGMCCAGAATATGCGCGTCCAAT
TCTCGGAGGGTCTAGTGAGTTTCCTTATCCTCGCAGAGGAAGAACCGGAA
GACAGGCAACTGAAAAAGGTCAGTCAATTTTCCCTATCTCTCAGTCAGTC
AAATGAAAAAAACGTATTTGATATGACTAATTTGCTAYAATCTTAACAGA
TCCTAAGAGTGAGAGCCCCATGATGCTTATCATGAGCATATTTGTATACG
TTCCAAGAGACGAAAGATTTGGTCACTTAAAGATGTCAGACGCGATTGCT
TATGCCGTGAAATCGCTATCTCAGCTCGTTAAGCCTGATGAGCTAGCAAC
TCTAGTTGCCACCCAAAACGAGTTTGGAAGCTTGAAAGATGTACTTAAAC
TCTACGAAGGAGGGATAGAGTTGCCCAAAGGTTTACTGAAATCTGTTAGG
RATAACATCCCTGTAGAGACAATCAAGGAACTTTTTCGAACTGATGGTGA
AAAATTCCTGAAGTTTCCCGTGCCTCAAGTGATCAAAGGTATAACTAAGT
ATATGATGCAGCCACTTTCTTTTGTTAATATGAGTTTAATGACAATTTTC
GTTCTCTTTGGGAAATTTTTATTAGCTTCCATGTAAGACCTTACTTTCGA
TGTAACGTCTTTCTTTTGCCTGACTGGTCTTTGAATGATTTGTATTAGAG
GATAAATCAGCATGGAGAACTGATGAAGAATTTGCAAGAGAAATGCTGGC
AGGCATAAATCCTGTGTCAATTCGCCGTCTCCAAGTAAGCTGTTGTCTAC
ATTTGTTTTGAAGAATATGAGACACCAGAGATTTTACGTTTGGACTATAT
TAACTTCGACTTTTCATCCCTGATCATTATTATTTACTGAATAAACTGCA
GGAGTTTCCGCCTGCTAGCAAGCTAGATCGAAAAGCATATGGGGATCAAA
CTAGTCGAATAACCAAAGAACAAATAGCTCATAACTTGAAAGGACTCAGC
ATAGATGAGGTAATTCTATTGACTAGTTTGTTTCGAAATTGAGTTTGAAC
CAAGTAGTCCTGAGGTTGCTTTGCAAGTTTGCAACCTTTTAGCTCGTTAT
ATCATATTTGAAATAATTACTGAAAATTACTTTCTGCAACAGGCAATCGA
TAACAACAAATTATTCATATTAGACCACCATGATTCAATAATGCCGTACC
TGAGGAGGATAAACGCAACTTCAACGAAAACATATGCAAGCAGGACACTC
CTCTTCTTACAAGATGACGGGACTTTGAAGCCATTAGCTATTGAATTAAG
CTTGCCGCACCCCGATGGAGATCAATTTGGTTGCACTAGCAACGTCTATA
CTCCCTCTAGCCAAGGTGTCGAGAGTTCCATTTGGCAACTTGCTAAAGCT
TACGTGGCTGTGGTTGACTCTGGTTATCATCAGCTCATCAGTCACTGGTA
TAGCACTCGAAAAAAGCCTAGCAAATAAGTTCAAAAATTATTTTTTTTYC
AAATGAAACTTTAAATGTGCTCTTTTTTGTCGCAGGTTGACAACTCATGC
AGCGATGGAGCCATTTATTATAGCAACAAATAGGCAGTTGAGCGTGCTTC
ACCCGATTCATAAACTCCTTCATCCTCACTTTCGTGACAATATGAATGTA
AATGCACTCGCTCGACAAGTTCTCATTAACGCTGGTGGAATACTAGAGGC
AACACTCTTTCCTGCAAAGTTTTCAATGGAATGGTCGTCTGCAATGTATA
AGAATTGGGTTTTTCCTGAACAAGCGCTCCCCGTAGATCTGATCAAAAGG
TAAATCTTATGACAGTAATATTAATCATATGTGCATTGCCATTTAGAAAC
AAAGATGATAGCGCTTAAGGTAACTAAGTATCTACCCTTTGCTTTGTTCA
GAGGAATGGCAGTTGAAGATTCAAGCTCCTCGCACGGCGTGCGTTTACTG
ATAGAAGACTATCCATTTGCTGCAGATGGGCTTGAGATATGGTCGGCAAT
CAAAACATGGGTTAAAGACTACTGCTCCTTCTACTATAAAACTGACGAAA
CCGTCCAAAAGGACTCGGAACTCCAGTCCTGGTGGAAGGAACTCCGCGAG
GAAGGTCACGGTGACAAGAAAGATGAGCCCTGGTGGCCTAAAATGCAGAC
TCGCGAAGAGCTGATAGAATCGTGCACCATCATCATATGGATTGCTTCAG
CCCATCATGCAGCAATCAATTTTGGGCAGTACCCTTATGGTGGAYWMCCC
CCAAACCGGCCAAGCATAAGCCGACGGTTCATGCCTGAAGAAGGCGCTCC
TGAATACGAGGAGCTCAAGACAGACCCCGAAAAGGAATTTTTGAAAACAA
TGACACCTGAGCTGCAGACCCTTCTTGGCATGGCCTCAATTGAAATCCTG
TCAAGGCACTCGGCTGATGAGGTTTATCTGGGGCAGAGAGACTCCGCAGA
ATGGACAACGGACGCAGACATACTGCAAGCTTCTGAAAATTTTAGAAAGA
AACTGAAAGAAGCTGAGGAAAGCATGAAGAGAAAGAACAAGGATGAGAAG
CTGAAGAACCGCGCTGGACCGGCAAAGATGCCATACACTTTGCTCTATCC
TTCCAGTGAGGCCGGACTTACTGGCAAGGGAATTCCCAACAGTGTCTCGA
TCTAA

protein sequence of MDP0000923670

>MDP0000923670 ID=MDP0000923670; Name=MDP0000923670; organism=Malus x domestica; type=polypeptide; length=934bp
MMLRAHLKHLSPLNSVVAAAAKTTNPDRATSVNGRPGLLQTTGPMKLLPA
GFLCMTDVAKSQPLTVVSSTAKPSQNITVDHHPKDDDKKIKGTVVLMKKN
VLELNDLKASFLDRFHELRGKKVSLQLISSVNCDPENGLQGKVGKAAYLE
DWITKITPLTAEENAFDITFDWDEEIGVPGAFIIRNEHHSEFYLKSLTLE
DVPGEGRVHFVCNSWVYPAKKYKKDRVFFANKTYLSSDTPVPLQKFREEE
LENLRGDDDDEKRELEEWDRVYGYAYYNDLGKPDKGPEYARPILGGSSEF
PYPRRGRTGRQATEKDPKSESPMMLIMSIFVYVPRDERFGHLKMSDAIAY
AVKSLSQLVKPDELATLVATQNEFGSLKDVLKLYEGGIELPKGLLKSVRX
NIPVETIKELFRTDGEKFLKFPVPQVIKEDKSAWRTDEEFAREMLAGINP
VSIRRLQEFPPASKLDRKAYGDQTSRITKEQIAHNLKGLSIDEAIDNNKL
FILDHHDSIMPYLRRINATSTKTYASRTLLFLQDDGTLKPLAIELSLPHP
DGDQFGCTSNVYTPSSQGVESSIWQLAKAYVAVVDSGYHQLISHWLTTHA
AMEPFIIATNRQLSVLHPIHKLLHPHFRDNMNVNALARQVLINAGGILEA
TLFPAKFSMEWSSAMYKNWVFPEQALPVDLIKRGMAVEDSSSSHGVRLLI
EDYPFAADGLEIWSAIKTWVKDYCSFYYKTDETVQKDSELQSWWKELREE
GHGDKKDEPWWPKMQTREELIESCTIIIWIASAHHAAINFGQYPYGGXPP
NRPSISRRFMPEEGAPEYEELKTDPEKEFLKTMTPELQTLLGMASIEILS
RHSADEVYLGQRDSAEWTTDADILQASENFRKKLKEAEESMKRKNKDEKL
KNRAGPAKMPYTLLYPSSEAGLTGKGIPNSVSI*

mRNA from alignment at chr4:19873253..19877207-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000923670 ID=MDP0000923670; Name=MDP0000923670; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr4:19873253..19877207- (Malus x domestica

mRNA from alignment at MDC022765.170:3462..7416-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MDP0000923670 ID=MDP0000923670; Name=MDP0000923670; organism=Malus x domestica; type=mRNA; length=3955bp; location=Sequence derived from: MDC022765.170:3462..7416- (Malus x domestica
ATGATGCTTCGTGCTCATCTTAAGCATCTCAGTCCCTTGAACTCAGTTGT
TGCAGCAGCAGCAAAAACCACCAATCCAGATCGTGCCACGTCAGTCAATG
GCAGACCAGGGTTGCTCCAAACGACTGGTCCAATGAAACTACTCCCCGCC
GGTTTCTTGTGCATGACTGATGTGGCAAAATCTCAGCCGTTAACTGTGGT
TTCATCAACTGCCAAGCCATCCCAGAACATCACCGTTGATCATCACCCAA
AAGATGACGACAAGAAGATCAAAGGGACGGTGGTGTTGATGAAGAAGAAT
GTTTTGGAGCTCAACGACCTCAAAGCTTCATTTCTTGATCGTTTCCATGA
GCTGCGGGGTAAAAAAGTTTCACTGCAGCTCATTAGTTCTGTTAATTGCG
ACCCTGGTAAGAATTTTATTACTAATTTACTTATTTTTAAGTTCACATAT
TACGTGCATTTTTAGTTTTATGGTTTACTTTTTATTTAATTAGTTTATTA
GCTTCAGTTCACAAATATTTGATATTATGGTGCCAAGTAGGTAAATTATT
AGTAATGGTTCAGATTTTTTATTTATTTTTTTGTTACAAAGGAGGTTTCA
AACCCTGAATCTCTAGCCTACTGATACTCATCGCCTTAGTTGCTCCGGTT
TTTTGTGTTAAGAAAACAAATTTGGAGGAATTATAATCCAAAATTTTCGG
CTTTTAACTTGATATGTTATTGTAGAAAATGGGTTGCAAGGAAAGGTTGG
AAAGGCAGCATATTTGGAAGATTGGATTACCAAAATCACTCCTTTAACAG
CTGAGGAGAATGCATTTGACATTACTTTCGATTGGGACGAGGAGATTGGA
GTCCCGGGAGCATTTATAATTAGAAATGAGCATCACAGTGAGTTCTACTT
GAAGTCTCTCACACTCGAAGATGTTCCTGGCGAAGGTCGAGTCCACTTTG
TTTGCAACTCGTGGGTGTACCCTGCTAAAAAGTACAAAAAGGACCGTGTT
TTCTTTGCTAACAAGGTAAACAAATTATGTTTTAGCTGATAGACTGCTTT
GTTATGCTAGAAATAATGAGAAGGTTCGTTTCAATTGCTCAATAGTCTCC
GGTACAGCTACACGTAGGGTTTACGAATTGTATGCTGAAGTAACCAATTG
AACTATAAATTTGCGCAGACGTATCTTTCAAGTGATACACCAGTGCCATT
ACAGAAGTTCAGAGAAGAAGAGCTCGAAAACTTGAGAGGAGACGACGATG
ATGAAAAAAGAGAGCTTGAGGAATGGGACAGGGTTTATGGCTATGCCTAC
TACAATGATTTGGGRAAACCAGATAAGGGMCCAGAATATGCGCGTCCAAT
TCTCGGAGGGTCTAGTGAGTTTCCTTATCCTCGCAGAGGAAGAACCGGAA
GACAGGCAACTGAAAAAGGTCAGTCAATTTTCCCTATCTCTCAGTCAGTC
AAATGAAAAAAACGTATTTGATATGACTAATTTGCTAYAATCTTAACAGA
TCCTAAGAGTGAGAGCCCCATGATGCTTATCATGAGCATATTTGTATACG
TTCCAAGAGACGAAAGATTTGGTCACTTAAAGATGTCAGACGCGATTGCT
TATGCCGTGAAATCGCTATCTCAGCTCGTTAAGCCTGATGAGCTAGCAAC
TCTAGTTGCCACCCAAAACGAGTTTGGAAGCTTGAAAGATGTACTTAAAC
TCTACGAAGGAGGGATAGAGTTGCCCAAAGGTTTACTGAAATCTGTTAGG
RATAACATCCCTGTAGAGACAATCAAGGAACTTTTTCGAACTGATGGTGA
AAAATTCCTGAAGTTTCCCGTGCCTCAAGTGATCAAAGGTATAACTAAGT
ATATGATGCAGCCACTTTCTTTTGTTAATATGAGTTTAATGACAATTTTC
GTTCTCTTTGGGAAATTTTTATTAGCTTCCATGTAAGACCTTACTTTCGA
TGTAACGTCTTTCTTTTGCCTGACTGGTCTTTGAATGATTTGTATTAGAG
GATAAATCAGCATGGAGAACTGATGAAGAATTTGCAAGAGAAATGCTGGC
AGGCATAAATCCTGTGTCAATTCGCCGTCTCCAAGTAAGCTGTTGTCTAC
ATTTGTTTTGAAGAATATGAGACACCAGAGATTTTACGTTTGGACTATAT
TAACTTCGACTTTTCATCCCTGATCATTATTATTTACTGAATAAACTGCA
GGAGTTTCCGCCTGCTAGCAAGCTAGATCGAAAAGCATATGGGGATCAAA
CTAGTCGAATAACCAAAGAACAAATAGCTCATAACTTGAAAGGACTCAGC
ATAGATGAGGTAATTCTATTGACTAGTTTGTTTCGAAATTGAGTTTGAAC
CAAGTAGTCCTGAGGTTGCTTTGCAAGTTTGCAACCTTTTAGCTCGTTAT
ATCATATTTGAAATAATTACTGAAAATTACTTTCTGCAACAGGCAATCGA
TAACAACAAATTATTCATATTAGACCACCATGATTCAATAATGCCGTACC
TGAGGAGGATAAACGCAACTTCAACGAAAACATATGCAAGCAGGACACTC
CTCTTCTTACAAGATGACGGGACTTTGAAGCCATTAGCTATTGAATTAAG
CTTGCCGCACCCCGATGGAGATCAATTTGGTTGCACTAGCAACGTCTATA
CTCCCTCTAGCCAAGGTGTCGAGAGTTCCATTTGGCAACTTGCTAAAGCT
TACGTGGCTGTGGTTGACTCTGGTTATCATCAGCTCATCAGTCACTGGTA
TAGCACTCGAAAAAAGCCTAGCAAATAAGTTCAAAAATTATTTTTTTTYC
AAATGAAACTTTAAATGTGCTCTTTTTTGTCGCAGGTTGACAACTCATGC
AGCGATGGAGCCATTTATTATAGCAACAAATAGGCAGTTGAGCGTGCTTC
ACCCGATTCATAAACTCCTTCATCCTCACTTTCGTGACAATATGAATGTA
AATGCACTCGCTCGACAAGTTCTCATTAACGCTGGTGGAATACTAGAGGC
AACACTCTTTCCTGCAAAGTTTTCAATGGAATGGTCGTCTGCAATGTATA
AGAATTGGGTTTTTCCTGAACAAGCGCTCCCCGTAGATCTGATCAAAAGG
TAAATCTTATGACAGTAATATTAATCATATGTGCATTGCCATTTAGAAAC
AAAGATGATAGCGCTTAAGGTAACTAAGTATCTACCCTTTGCTTTGTTCA
GAGGAATGGCAGTTGAAGATTCAAGCTCCTCGCACGGCGTGCGTTTACTG
ATAGAAGACTATCCATTTGCTGCAGATGGGCTTGAGATATGGTCGGCAAT
CAAAACATGGGTTAAAGACTACTGCTCCTTCTACTATAAAACTGACGAAA
CCGTCCAAAAGGACTCGGAACTCCAGTCCTGGTGGAAGGAACTCCGCGAG
GAAGGTCACGGTGACAAGAAAGATGAGCCCTGGTGGCCTAAAATGCAGAC
TCGCGAAGAGCTGATAGAATCGTGCACCATCATCATATGGATTGCTTCAG
CCCATCATGCAGCAATCAATTTTGGGCAGTACCCTTATGGTGGAYWMCCC
CCAAACCGGCCAAGCATAAGCCGACGGTTCATGCCTGAAGAAGGCGCTCC
TGAATACGAGGAGCTCAAGACAGACCCCGAAAAGGAATTTTTGAAAACAA
TGACACCTGAGCTGCAGACCCTTCTTGGCATGGCCTCAATTGAAATCCTG
TCAAGGCACTCGGCTGATGAGGTTTATCTGGGGCAGAGAGACTCCGCAGA
ATGGACAACGGACGCAGACATACTGCAAGCTTCTGAAAATTTTAGAAAGA
AACTGAAAGAAGCTGAGGAAAGCATGAAGAGAAAGAACAAGGATGAGAAG
CTGAAGAACCGCGCTGGACCGGCAAAGATGCCATACACTTTGCTCTATCC
TTCCAGTGAGGCCGGACTTACTGGCAAGGGAATTCCCAACAGTGTCTCGA
TCTAA

Coding sequence (CDS) from alignment at MDC022765.170:3462..7416-

>MDP0000923670 ID=MDP0000923670; Name=MDP0000923670; organism=Malus x domestica; type=CDS; length=2802bp; location=Sequence derived from: MDC022765.170:3462..7416- (Malus x domestica
ATGATGCTTCGTGCTCATCTTAAGCATCTCAGTCCCTTGAACTCAGTTGT
TGCAGCAGCAGCAAAAACCACCAATCCAGATCGTGCCACGTCAGTCAATG
GCAGACCAGGGTTGCTCCAAACGACTGGTCCAATGAAACTACTCCCCGCC
GGTTTCTTGTGCATGACTGATGTGGCAAAATCTCAGCCGTTAACTGTGGT
TTCATCAACTGCCAAGCCATCCCAGAACATCACCGTTGATCATCACCCAA
AAGATGACGACAAGAAGATCAAAGGGACGGTGGTGTTGATGAAGAAGAAT
GTTTTGGAGCTCAACGACCTCAAAGCTTCATTTCTTGATCGTTTCCATGA
GCTGCGGGGTAAAAAAGTTTCACTGCAGCTCATTAGTTCTGTTAATTGCG
ACCCTGAAAATGGGTTGCAAGGAAAGGTTGGAAAGGCAGCATATTTGGAA
GATTGGATTACCAAAATCACTCCTTTAACAGCTGAGGAGAATGCATTTGA
CATTACTTTCGATTGGGACGAGGAGATTGGAGTCCCGGGAGCATTTATAA
TTAGAAATGAGCATCACAGTGAGTTCTACTTGAAGTCTCTCACACTCGAA
GATGTTCCTGGCGAAGGTCGAGTCCACTTTGTTTGCAACTCGTGGGTGTA
CCCTGCTAAAAAGTACAAAAAGGACCGTGTTTTCTTTGCTAACAAGACGT
ATCTTTCAAGTGATACACCAGTGCCATTACAGAAGTTCAGAGAAGAAGAG
CTCGAAAACTTGAGAGGAGACGACGATGATGAAAAAAGAGAGCTTGAGGA
ATGGGACAGGGTTTATGGCTATGCCTACTACAATGATTTGGGRAAACCAG
ATAAGGGMCCAGAATATGCGCGTCCAATTCTCGGAGGGTCTAGTGAGTTT
CCTTATCCTCGCAGAGGAAGAACCGGAAGACAGGCAACTGAAAAAGATCC
TAAGAGTGAGAGCCCCATGATGCTTATCATGAGCATATTTGTATACGTTC
CAAGAGACGAAAGATTTGGTCACTTAAAGATGTCAGACGCGATTGCTTAT
GCCGTGAAATCGCTATCTCAGCTCGTTAAGCCTGATGAGCTAGCAACTCT
AGTTGCCACCCAAAACGAGTTTGGAAGCTTGAAAGATGTACTTAAACTCT
ACGAAGGAGGGATAGAGTTGCCCAAAGGTTTACTGAAATCTGTTAGGRAT
AACATCCCTGTAGAGACAATCAAGGAACTTTTTCGAACTGATGGTGAAAA
ATTCCTGAAGTTTCCCGTGCCTCAAGTGATCAAAGAGGATAAATCAGCAT
GGAGAACTGATGAAGAATTTGCAAGAGAAATGCTGGCAGGCATAAATCCT
GTGTCAATTCGCCGTCTCCAAGAGTTTCCGCCTGCTAGCAAGCTAGATCG
AAAAGCATATGGGGATCAAACTAGTCGAATAACCAAAGAACAAATAGCTC
ATAACTTGAAAGGACTCAGCATAGATGAGGCAATCGATAACAACAAATTA
TTCATATTAGACCACCATGATTCAATAATGCCGTACCTGAGGAGGATAAA
CGCAACTTCAACGAAAACATATGCAAGCAGGACACTCCTCTTCTTACAAG
ATGACGGGACTTTGAAGCCATTAGCTATTGAATTAAGCTTGCCGCACCCC
GATGGAGATCAATTTGGTTGCACTAGCAACGTCTATACTCCCTCTAGCCA
AGGTGTCGAGAGTTCCATTTGGCAACTTGCTAAAGCTTACGTGGCTGTGG
TTGACTCTGGTTATCATCAGCTCATCAGTCACTGGTTGACAACTCATGCA
GCGATGGAGCCATTTATTATAGCAACAAATAGGCAGTTGAGCGTGCTTCA
CCCGATTCATAAACTCCTTCATCCTCACTTTCGTGACAATATGAATGTAA
ATGCACTCGCTCGACAAGTTCTCATTAACGCTGGTGGAATACTAGAGGCA
ACACTCTTTCCTGCAAAGTTTTCAATGGAATGGTCGTCTGCAATGTATAA
GAATTGGGTTTTTCCTGAACAAGCGCTCCCCGTAGATCTGATCAAAAGAG
GAATGGCAGTTGAAGATTCAAGCTCCTCGCACGGCGTGCGTTTACTGATA
GAAGACTATCCATTTGCTGCAGATGGGCTTGAGATATGGTCGGCAATCAA
AACATGGGTTAAAGACTACTGCTCCTTCTACTATAAAACTGACGAAACCG
TCCAAAAGGACTCGGAACTCCAGTCCTGGTGGAAGGAACTCCGCGAGGAA
GGTCACGGTGACAAGAAAGATGAGCCCTGGTGGCCTAAAATGCAGACTCG
CGAAGAGCTGATAGAATCGTGCACCATCATCATATGGATTGCTTCAGCCC
ATCATGCAGCAATCAATTTTGGGCAGTACCCTTATGGTGGAYWMCCCCCA
AACCGGCCAAGCATAAGCCGACGGTTCATGCCTGAAGAAGGCGCTCCTGA
ATACGAGGAGCTCAAGACAGACCCCGAAAAGGAATTTTTGAAAACAATGA
CACCTGAGCTGCAGACCCTTCTTGGCATGGCCTCAATTGAAATCCTGTCA
AGGCACTCGGCTGATGAGGTTTATCTGGGGCAGAGAGACTCCGCAGAATG
GACAACGGACGCAGACATACTGCAAGCTTCTGAAAATTTTAGAAAGAAAC
TGAAAGAAGCTGAGGAAAGCATGAAGAGAAAGAACAAGGATGAGAAGCTG
AAGAACCGCGCTGGACCGGCAAAGATGCCATACACTTTGCTCTATCCTTC
CAGTGAGGCCGGACTTACTGGCAAGGGAATTCCCAACAGTGTCTCGATCT
AA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000907	LipOase
IPR001024	PLAT/LH2_dom
IPR001246	LipOase_plant
IPR008976	Lipase/lipooxygenase, PLAT/LH2
IPR013819	LipOase_C
IPR020834	LipOase_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0005515	protein binding
GO:0005506	iron ion binding
GO:0016165	linoleate 13S-lipoxygenase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	obsolete oxidation-reduction process