MDP0000930662, MDP0000930662 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000930662
Unique NameMDP0000930662
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length1983
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000930662_exon_6MDP0000930662_exon_6Malus x domesticaCDS
MDP0000930662_exon_5MDP0000930662_exon_5Malus x domesticaCDS
MDP0000930662_exon_4MDP0000930662_exon_4Malus x domesticaCDS
MDP0000930662_exon_3MDP0000930662_exon_3Malus x domesticaCDS
MDP0000930662_exon_2MDP0000930662_exon_2Malus x domesticaCDS
MDP0000930662_exon_1MDP0000930662_exon_1Malus x domesticaCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MDP0000930662MDP0000930662Malus x domesticapolypeptide


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013216Methyltransferase type 11PFAMPF08241Methyltransf_11coord: 49..148
score: 4
NoneNo IPR availableGENE3D3.40.50.150no descriptioncoord: 6..199
score: 2.1
NoneNo IPR availablePANTHERPTHR10108FAMILY NOT NAMEDcoord: 1..195
score: 1
NoneNo IPR availablePANTHERPTHR10108:SF157 METHYLTRANSFERASE-RELATEDcoord: 1..195
score: 1
NoneNo IPR availableSUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 6..214
score: 3.3
NoneNo IPR availableSEGsegsegcoord: 5..16
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000930662 ID=MDP0000930662; Name=MDP0000930662; organism=Malus x domestica; type=mRNA; length=1983bp
ATGAGGCATGAACCTAGTTGAACTGATTGCATCTACCACATTACAATTTT
CAAAGCATTACCAATAGTACTTCCTAATACCTCATGAATATGTTGAAACT
TTGCATCTCTATATGTTGATTAGTGACTTTTTGTTGCATCAGGACTCCAT
TGGTATCGTACCTCTATGAGAGGGGTTGGCGTCAAAGCTTTACTGTATGG
GGTGGATTTCCTGGCCCAGAGAAAGAGGTAAGATGATCAGTTACTTTATT
TCAGATTTTATCATCTCAATGGCTTATCAAATGTCCTTTATAAATTTCAA
AATAGAGTATTTGATAGGTTGCGTTGTAACTCATACTGTCATACAAGCTT
TAGAAAGTTGCGAAGTGTGCCGACGGACAATATTTCATATAATATTGGAG
TTTTGGACAGGGAACGACATAGTCCATTTCGTTCGGTTACATATGAATTA
TGAAGTGAAAATCAATTTTCTATTGAAGTATTTTATTTCGGGCCTAAGGA
TAGTATTTACTTAAATTAAGAAGCTCCACTGCCAATGATCGCCAGTTAAC
GTTTCTCTCGAAAAGAAAAGAAAGGGTAGAAAAAGTGCTCTATTCTGATC
ACGGCATCGAAAAACAGATAAAATCATTGTGTTGCAATGTAGTTGTTTGA
AAAACTGAAAAAACAGTCATATTTTACCAGTGTGTACTCATTTGTCTTGC
CAAAGGAGGTTGTTGAGTTGCTAACCGCGGCATATTTTTTATTGCAGTTT
GAGTTGATTAAGGATTTCTTAAAGCCAGTCTTGGGTGGTGGAAATATCAT
TGATGCAAGTTGTGGGAGTGGGATGTTTTCTAGACTTTTTGCTAAGAGCG
GATTATTTTCTCTTGTTGTTGCCTTGGACTACTCAGAGAACATGTTGAAA
GAGTGCTATGGATTCATTCAGCAGGAGGATAACTTTCCCAAAGAGTACAG
AACCTTGAAATTTTCATTCAAATTTAGATGATAAAGCTCAAAGTTTAAAA
TACTATCCGGTTTGAACTTCTTAGGGATGTTTCAGAAATTTTGTTATCAA
TTTTKTTTTTTGCCTGATTAAGTTTGTTTTTTTTATTAGGAACATGATCC
TGGTCAGAGCTGATATTTCTAGGCTTCCCTTTGCTACTAGTTCTGTCGAT
GCAGTGCATGCTGGTGCTGCCATACACTGTTGGCCTTCACCATCATCAGC
TGTACGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATGGTGT
TAGAGCTAACCGTGCTGCTTGTTTTGACTACCTGGAAGGCACAAATCTTA
ACGTATTAGCAGCGGTGAAAAGTATTTACATGTCCTTGATGCTAATAAAT
TTGTCTCTAATAAGTTAATGAAACATTTTTCATTTTGGGCACATTCAACT
ACATACCTTTAAGATTTCTTAAAGAAAAATAAGAAAATAGCCAGCCTTGC
TTTGGAGGAAGATGTAATATTATCTGTGCAGATGTAATATTAACATTATC
TGGTAGAACCAAATGTGTTTTCTCCCCAGTTTTCCAGTTTTAGTTTAACC
TGGTAGTTTCTCCTGAGTAATTTGGTAGCTGTGGTTTTGAAGGTTGCTGA
AATTAGTCGAGTCCTGCGACCCGGCGGGGTGTTTGTTGCAACCACTTTCA
TATGGGACGGGCCTTTTTCGCTCATCCCATTTCAAAGGAACATAGCACAG
GTACATCGGTTCCACTCCAAAGTTTGATTGTTGCAGATTTGGGATTCCGC
TGAATGTGTGTTATGTGGTGAATGGTTTGGAATTACGACTCTATTTTATC
TCCCTCTCACTGGGTGTTGATTTTATGTCTTTTGTTTCGTAGAGAACAAA
GCAAATGTCGGGCAACCAACTCTTCACGTCAGAAAGTGAATTACAAGATA
TCTGCCAAGCATGTGGACTGGTAGGTTTTACCAAAGTGAGGAATGGGCGT
TTTGTGATGATTTCTGCCACAAAACCCATTTAA
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protein sequence of MDP0000930662

>MDP0000930662 ID=MDP0000930662; Name=MDP0000930662; organism=Malus x domestica; type=polypeptide; length=216bp
MRTPLVSYLYERGWRQSFTVWGGFPGPEKEFELIKDFLKPVLGGGNIIDA
SCGSGMFSRLFAKSGLFSLVVALDYSENMLKECYGFIQQEDNFPKENMIL
VRADISRLPFATSSVDAVHAGAAIHCWPSPSSAVAEISRVLRPGGVFVAT
TFIWDGPFSLIPFQRNIAQRTKQMSGNQLFTSESELQDICQACGLVGFTK
VRNGRFVMISATKPI*
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mRNA from alignment at chr13:22589466..22591448-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000930662 ID=MDP0000930662; Name=MDP0000930662; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:22589466..22591448- (Malus x domestica
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mRNA from alignment at MDC014190.79:7598..9580-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000930662 ID=MDP0000930662; Name=MDP0000930662; organism=Malus x domestica; type=mRNA; length=1983bp; location=Sequence derived from: MDC014190.79:7598..9580- (Malus x domestica
ATGAGGCATGAACCTAGTTGAACTGATTGCATCTACCACATTACAATTTT
CAAAGCATTACCAATAGTACTTCCTAATACCTCATGAATATGTTGAAACT
TTGCATCTCTATATGTTGATTAGTGACTTTTTGTTGCATCAGGACTCCAT
TGGTATCGTACCTCTATGAGAGGGGTTGGCGTCAAAGCTTTACTGTATGG
GGTGGATTTCCTGGCCCAGAGAAAGAGGTAAGATGATCAGTTACTTTATT
TCAGATTTTATCATCTCAATGGCTTATCAAATGTCCTTTATAAATTTCAA
AATAGAGTATTTGATAGGTTGCGTTGTAACTCATACTGTCATACAAGCTT
TAGAAAGTTGCGAAGTGTGCCGACGGACAATATTTCATATAATATTGGAG
TTTTGGACAGGGAACGACATAGTCCATTTCGTTCGGTTACATATGAATTA
TGAAGTGAAAATCAATTTTCTATTGAAGTATTTTATTTCGGGCCTAAGGA
TAGTATTTACTTAAATTAAGAAGCTCCACTGCCAATGATCGCCAGTTAAC
GTTTCTCTCGAAAAGAAAAGAAAGGGTAGAAAAAGTGCTCTATTCTGATC
ACGGCATCGAAAAACAGATAAAATCATTGTGTTGCAATGTAGTTGTTTGA
AAAACTGAAAAAACAGTCATATTTTACCAGTGTGTACTCATTTGTCTTGC
CAAAGGAGGTTGTTGAGTTGCTAACCGCGGCATATTTTTTATTGCAGTTT
GAGTTGATTAAGGATTTCTTAAAGCCAGTCTTGGGTGGTGGAAATATCAT
TGATGCAAGTTGTGGGAGTGGGATGTTTTCTAGACTTTTTGCTAAGAGCG
GATTATTTTCTCTTGTTGTTGCCTTGGACTACTCAGAGAACATGTTGAAA
GAGTGCTATGGATTCATTCAGCAGGAGGATAACTTTCCCAAAGAGTACAG
AACCTTGAAATTTTCATTCAAATTTAGATGATAAAGCTCAAAGTTTAAAA
TACTATCCGGTTTGAACTTCTTAGGGATGTTTCAGAAATTTTGTTATCAA
TTTTKTTTTTTGCCTGATTAAGTTTGTTTTTTTTATTAGGAACATGATCC
TGGTCAGAGCTGATATTTCTAGGCTTCCCTTTGCTACTAGTTCTGTCGAT
GCAGTGCATGCTGGTGCTGCCATACACTGTTGGCCTTCACCATCATCAGC
TGTACGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATGGTGT
TAGAGCTAACCGTGCTGCTTGTTTTGACTACCTGGAAGGCACAAATCTTA
ACGTATTAGCAGCGGTGAAAAGTATTTACATGTCCTTGATGCTAATAAAT
TTGTCTCTAATAAGTTAATGAAACATTTTTCATTTTGGGCACATTCAACT
ACATACCTTTAAGATTTCTTAAAGAAAAATAAGAAAATAGCCAGCCTTGC
TTTGGAGGAAGATGTAATATTATCTGTGCAGATGTAATATTAACATTATC
TGGTAGAACCAAATGTGTTTTCTCCCCAGTTTTCCAGTTTTAGTTTAACC
TGGTAGTTTCTCCTGAGTAATTTGGTAGCTGTGGTTTTGAAGGTTGCTGA
AATTAGTCGAGTCCTGCGACCCGGCGGGGTGTTTGTTGCAACCACTTTCA
TATGGGACGGGCCTTTTTCGCTCATCCCATTTCAAAGGAACATAGCACAG
GTACATCGGTTCCACTCCAAAGTTTGATTGTTGCAGATTTGGGATTCCGC
TGAATGTGTGTTATGTGGTGAATGGTTTGGAATTACGACTCTATTTTATC
TCCCTCTCACTGGGTGTTGATTTTATGTCTTTTGTTTCGTAGAGAACAAA
GCAAATGTCGGGCAACCAACTCTTCACGTCAGAAAGTGAATTACAAGATA
TCTGCCAAGCATGTGGACTGGTAGGTTTTACCAAAGTGAGGAATGGGCGT
TTTGTGATGATTTCTGCCACAAAACCCATTTAA
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Coding sequence (CDS) from alignment at MDC014190.79:7598..9580-

>MDP0000930662 ID=MDP0000930662; Name=MDP0000930662; organism=Malus x domestica; type=CDS; length=648bp; location=Sequence derived from: MDC014190.79:7598..9580- (Malus x domestica
ATGAGGACTCCATTGGTATCGTACCTCTATGAGAGGGGTTGGCGTCAAAG
CTTTACTGTATGGGGTGGATTTCCTGGCCCAGAGAAAGAGTTTGAGTTGA
TTAAGGATTTCTTAAAGCCAGTCTTGGGTGGTGGAAATATCATTGATGCA
AGTTGTGGGAGTGGGATGTTTTCTAGACTTTTTGCTAAGAGCGGATTATT
TTCTCTTGTTGTTGCCTTGGACTACTCAGAGAACATGTTGAAAGAGTGCT
ATGGATTCATTCAGCAGGAGGATAACTTTCCCAAAGAGAACATGATCCTG
GTCAGAGCTGATATTTCTAGGCTTCCCTTTGCTACTAGTTCTGTCGATGC
AGTGCATGCTGGTGCTGCCATACACTGTTGGCCTTCACCATCATCAGCTG
TTGCTGAAATTAGTCGAGTCCTGCGACCCGGCGGGGTGTTTGTTGCAACC
ACTTTCATATGGGACGGGCCTTTTTCGCTCATCCCATTTCAAAGGAACAT
AGCACAGAGAACAAAGCAAATGTCGGGCAACCAACTCTTCACGTCAGAAA
GTGAATTACAAGATATCTGCCAAGCATGTGGACTGGTAGGTTTTACCAAA
GTGAGGAATGGGCGTTTTGTGATGATTTCTGCCACAAAACCCATTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013216Methyltransf_11
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity