MDP0000937952, MDP0000937952 (mRNA) Malus spp. (apple)

Transcript Overview
NameMDP0000937952
Unique NameMDP0000937952
TypemRNA
OrganismMalus x domestica (Apple)
Sequence length4421
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Malus x domestica Whole Genome v1.0 Assembly & Annotation2012-07-26
InterProScan of Malus x domestica Whole Genome v1.0 mRNA2012-07-23
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MDP0000937952_exon_9MDP0000937952_exon_9Malus x domesticaCDS
MDP0000937952_exon_8MDP0000937952_exon_8Malus x domesticaCDS
MDP0000937952_exon_7MDP0000937952_exon_7Malus x domesticaCDS
MDP0000937952_exon_6MDP0000937952_exon_6Malus x domesticaCDS
MDP0000937952_exon_5MDP0000937952_exon_5Malus x domesticaCDS
MDP0000937952_exon_4MDP0000937952_exon_4Malus x domesticaCDS
MDP0000937952_exon_3MDP0000937952_exon_3Malus x domesticaCDS
MDP0000937952_exon_2MDP0000937952_exon_2Malus x domesticaCDS
MDP0000937952_exon_1MDP0000937952_exon_1Malus x domesticaCDS


InterPro
Analysis Name: InterProScan of Malus x domestica Whole Genome v1.0 mRNA
Date Performed: 2012-07-23
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000306Zinc finger, FYVE-typePFAMPF01363FYVEcoord: 645..711
score: 3.3
IPR000306Zinc finger, FYVE-typeSMARTSM00064Protein present in Fab1, YOTB, Vac1, and EEAcoord: 643..712
score: 1.6
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 319..335
score: 1.3e-14coord: 369..385
score: 1.3e-14coord: 410..426
score: 1.3e-14coord: 426..440
score: 1.3e-14coord: 532..550
score: 1.3e-14coord: 588..609
score: 1.3
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 317..365
score: 4.1e-13coord: 368..420
score: 2.4e-08coord: 424..472
score: 1.1e-11coord: 491..537
score: 3.5e-14coord: 542..589
score: 4.3e-09coord: 594..641
score: 3.1
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 303..313
score: NAcoord: 410..420
score: NAcoord: 462..472
score
IPR000408Regulator of chromosome condensation, RCC1PROFILEPS50012RCC1_3coord: 255..316
score: 11.308coord: 317..368
score: 15.248coord: 369..423
score: 13.921coord: 424..475
score: 13.318coord: 491..542
score: 16.092coord: 543..592
score: 14.464coord: 593..644
score: 14
IPR009091Regulator of chromosome condensation/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30no descriptioncoord: 253..644
score: 2.8e
IPR009091Regulator of chromosome condensation/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 255..648
score: 3.1e
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 644..734
score: 5.2
IPR011993Pleckstrin homology-like domainGENE3D2.30.29.30no descriptioncoord: 11..136
score: 2.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10no descriptioncoord: 645..713
score: 1
IPR013591Brevis radix-like domainPFAMPF08381BRXcoord: 977..1033
score: 4.7
IPR013591Brevis radix-like domainPROFILEPS51514BRXcoord: 978..1033
score: 29
IPR017455Zinc finger, FYVE-relatedPROFILEPS50178ZF_FYVEcoord: 649..711
score: 12
NoneNo IPR availableCOILcoilcoiled-coilcoord: 856..919
score
NoneNo IPR availablePANTHERPTHR22870FAMILY NOT NAMEDcoord: 26.
NoneNo IPR availablePANTHERPTHR22870:SF25REGULATOR OF CHROMOSOME CONDENSATION-RELATEDcoord: 26.
NoneNo IPR availablePFAMPF13713BRX_Ncoord: 892..929
score: 1.3
NoneNo IPR availableSEGsegsegcoord: 234..246
score: NAcoord: 255..277
score: NAcoord: 472..489
score: NAcoord: 679..693
score: NAcoord: 708..722
score: NAcoord: 784..795
score
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 11..129
score: 3.3
NoneNo IPR availableSEGsegsegcoord: 12..26
score
NoneNo IPR availableSEGsegsegcoord: 12..28
score
NoneNo IPR availableSEGsegsegcoord: 30..43
score
NoneNo IPR availableSEGsegsegcoord: 107..115
score: NAcoord: 161..170
score
NoneNo IPR availableSEGsegsegcoord: 23..47
score

Sequences
The following sequences are available for this feature:

mRNA sequence

>MDP0000937952 ID=MDP0000937952; Name=MDP0000937952; organism=Malus x domestica; type=mRNA; length=4421bp
ATGGCTAGTCCTCAGAGAAGCGGTCCGGTCGAGAGGGATATCGACCAGGT
TTGTTCTTTTTCATCAGTTATTTCCCATGGAATTAACACTCAGAGTGAGC
CATGACAAATTTTTTTTGTTCAAATGATGTATTGAGCTTAGTCATTTCAG
CTCATGTTTCCATTTTTCTTCTTTCCATTCTGTTTGCAGGCCATCACAGC
ACTTAAGAAAGGTGCAACTTTGTTAAAATATGGACGCAGAGGGAAGCCGA
AATTCTGCCCATTCCGGCTTTCTAATGTAAGTTGGCTCGACATATAGCCT
TGTTTGGTTTCTGCTCTTTTGGCTCAGATAATTCTGGTTTCGTTTCAGGA
CGAGGCTCTTTTGATATGGTACTCTGGCAAAGAAGAAAAACACCTTAAAC
TTTGTCATGTTTCGACAATTATTCCTGGCCAGCGTACTGTGAGTTTCAGC
TCCCATTCTGTTTTCGGATAAAATCTCCACCAAAGCTTGACTGTAAAATC
TCAATTTTCTTGAACGCTTATGCCTGCTCTCGAAAGAAGCTTACATGGAA
GATTTGTTCTTTGGTGGCTTCACCAATTACCTTCCATAGATAATTATAAA
CATCACTGCGGTTTTTCTTTGCAGGCAATATTTCAGCGGTATCCACGGCC
TGAAAAGGAGTACCAGTCATTTTCGCTTCTATACAACGATAGGTCCTTGG
ACTTGGTGAGTAAATTTGCTACATATATTCAAGGATCATTGATGCAACTG
CATGTATAAAGCACCTGAGAAATTGTATTTTCTGGTATATCATGGTTTAA
TCAGTTACCACCCCCTGCTGGACAGATATGTAAAGACAAAGATGAAGCTG
AAGTTTGGTTTGTTGGTCTTAAGGCGATAATCACTCGAGGTAATTACCGG
AACTGGAGAAGCGAATCAAGATTGGAGGGCACATCAATAGATAGCCCCCA
TGCTCGGACTCGGCGACATTCTCCAACAGTGACACCATTCTGCATTGGGG
TGATTTATCTGTTGTTATTTCTTTTATAAGGAAACAAAGAATATACTTCT
CTTGATGTATCTGGCATTTACGTTTTATTTCTTGGTGTTTTTACCAAATA
CGACAGGATCCAAGAGATACTGAGGGAGTTTCTTTGGAGAATATCCCACA
GAGTAGATTAGGACGAGCATTCGCTGACATAATATCTTATACCGCCACCC
CCAAGAATGCCATACAAGCTGAATCAGTCTCAAATGCATCGTTATCACCT
GTATCTGTGGATAACTCCAATGGTCGAAATTCTGCATCTGAAGCATTTCG
GGTTAGTTTATCTAGTGCTGTAAGCTCGTCTAGTCAAGGTTCTTGTCAAG
ATGATTTTGATACTTTAGGAGATGTTTTTATTTGGGGCGAAGGTATTGGT
GGTGGAGTACTTGGAGGCGGTGTGGATAGAGTAGGGAGCTCATATGGTTC
CAGGACGGATGCTCTTCTGCCTAAGGTATTAGAATCAACAGTGGTCGTAG
ATGTTCACGGAATTGCTTGTGGTGCCAGACATGCTGTTCTAGTCACCAAG
CAAGGGGAAATCTTCAGCTGGGGAGARGAGTCAGGAGGCAGGCTTGGTCA
CGGTGTTGATACAGATGTTTCCCACCCAAAGCTCATTGAGACTCTTAGTG
GGATGAATGTGGAATTAGTGGCATGTGGGGAATATCACACTTGTGCTGTT
ACACTTTCTGGAGATCTCTATACATGGGGTGATGGTACTCATCATTTTGG
CCTGCTTGGGCATGGAAGTGAAGTTAGTCACTGGATTCCCAAAAAGGTAT
GTGGTCACTTGGAAGGTATCCACATATCCTATATCGCTTGTGGACCGTGG
CATACAGCTGCTGTGACATCAGGTGGCCAGTTATTTACCTTTGGGGATGG
AACTTTTGGTGCCTTAGGACATGGGGATCATAGTAGCACAAGCACGCCGC
GGGAGGTGGAGACTTTGAGAGGGCTAAGAACAACAAGGATTGCTTGTGGT
ATTTGGCACACTGCTGCAGTTGTTGAAGTAGTGAATGAATCGTCTAGCCC
CGAGACTTCTAGTAACTCTTCATATGGGAAGCTCTACACTTGGGGTGATG
GTGATAAAGGCCGACTTGGACATGGTGATGAACAATCTAAGCTAGTTCCT
GCACGCGTAGCTGCATTGGTTGATAAAAATATTTGTCAAGTAGCCTGTGG
CCATAATCTCACAGTTGGCCTTACAACCTCAGGACAAGTATATACGATGG
GAAGTGCTGCTTATGGACAGCTTGGGAATCCTTCAGCTGACGGGAAAGTT
CCCACTCTGGTCGAGGGTGAAATTAGTTTTGTGGAAGAAATTGCATGCGG
TTCTTATCATGTTGCAGTTTTGACTTCCAAGACTGAGGTTTATACTTGGG
GAAGGGGTTCGAATGGGCAACTAGGCCACGGAGACAATGATCATAGATAT
ACGCCTACCCCTGTTGATTGTATGAAGGATAAGCAAGTAAAGAGTGTAGC
ATGTGGTCCAAACCTAACGGCGGCCATTTGTCTTCATAAATGGGTATCAA
GTGCTGACCATTCTGTTTGCTCTGATTGTCACAATCCCTTTGGTTTCAGA
AGAAAACGTCACAATTGTTACAACTGTGGGCTAGTCTTCTGCAAAGCATG
CAGCAGCAAGAAATCTCTSRAAGCTGCCTTGGCTCCAAATACGAACAAGC
CATATCGGGTGTGCGACGAGTGTTATAGTAAACTGAAGAAGGCTGCAGAA
GCCAGTTCTGCTTTGCGAAGTCCAATAAGAAGTGGAAATATGCGTCCTAA
ATCCCATGAGGTGACAGATAAAGAAAATCTGATCCCTATGTTACGGGCAA
CGCTCTCCAGACTCTCTTCTTTTGGCACAAACAACCAGGGCGAAAGCAAG
CAGCTTAAGCAAGAAAGAAAACCAGAAGTGCGTGATAATCGTGTCTTCCC
AGATTTGAATGGACAGTTGCAGTTAGGGGGTTTTAATTTGACAAGAGCAT
CAACTCCTCCCACTGCAGGTTCAGAAAAAGTTGTTTCGCCTTCTATTCCT
GCCTCTAAAAAGGCTTCTCGGTATACATCTCCTGTTTCAGGAAAGTCAAG
TCCACGCCGGTCTTCTGAAGAAATCATTCTTGAGGATTCAAAGCATATAA
ATGGAAGTTTGAGCCAAGAAATCATACAATTAAGGACACAGGTAGGCCTT
TTTATAGTGCTTTAATGTCTACAATCTAATAGTTGATGACATCCGTGCAT
ATAACTAAATCTTTTGGTGGGTTCTGGGATCCAAATCTTTGACATTCTGT
AGCTGCTGAAGAGAGAGGAACTAGCCTAGCTTATGAACTGAGGAATTGGA
TTAAAATTTGCATCCTTACGAAAATTAGTTAAAGTAATGTGTATACATTA
CGCTGAAATTGTTCCAAAAACTATGTAGGTAGAAGGCCTTACTCTCAAAT
CCCAGCATCTTGAAGCTGAACTTCAACGCACATCAAAGAAATTGAAGGAG
GTCTCTGCAATAGCCGCAGATGAAGCTGAAAAACGCAAATCTGCAAAAGA
AGTTATTAAATCTCTAACTGCTCAGGTTGCAACCGTTCTGTGTTCGATGT
TCTGTTTTTTCTTATGCTTTCTGATTCTTTGGCGTTGCAACTTATCCTAT
CCTCCGTAATTTTCTAGTGTTACACTGATTTTACTTGTCGAACAGTTGAA
GGAGATGTCTGAAAGAATGCCTGAAGGGCAGATGAGTCACTGCAATACAG
GTTCTATTTCGCATGCAATCAGCTTTGGAAACCAGTTATCCAAAGAGCCC
TCTCTGTCAAACATAAATACTTCGCAAACTTTGTCCAATGGCAATTCAAT
GGATCGAATCCTAACTAATGGGACTAAATCACCAACTGGAAAGTCCGAGC
GGGTGCTACAAGATGAACCTGGTGTATATATAACTCTAAGCTCCTTGCCA
GACGGCAGTAATGAACTCAGGCGTGTTCGCTTCAGGTACCTCTCTCCTCC
TCCCCCTTTATTTTCAGAGTCAGATAAATACAACCAAGTAAATATCTAAG
GCCATGGCTTAGGCTGCAGAAGATTCACTCTGTTTCTTTTTCGGCCTGCC
ACGTTGTGCCGTCATTGCATTTGAATCCATTACCTTGAGGAATCTCCATC
AGCTTTCTCACATTATCCTACCATTTCTGAATCATTCATATCTATGTTAG
TTTTCCATAGTCTAGATTTTTCGAACGAAACTATTACAATCGACTTTATA
ATATCACGGTGCGGATTGATGAAATGTATTTGATGCCCTCTATCTTGTTT
GCTGAAATTTAAATTGTTGTTCGACAGCCGGAGACATTTCACTGAAGAAG
CAGCGGAGAGATGGTGGGCTGAAAATGGGGTAAAGTTATGTGAGCGGCAC
AACATAAAAGGTGCAGAGTAA
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mRNA from alignment at chr13:4698539..4702959-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000937952 ID=MDP0000937952; Name=MDP0000937952; organism=Malus x domestica; type=mRNA; location=Sequence derived from: chr13:4698539..4702959- (Malus x domestica
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mRNA from alignment at MDC012215.80:49937..54357-

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MDP0000937952 ID=MDP0000937952; Name=MDP0000937952; organism=Malus x domestica; type=mRNA; length=4421bp; location=Sequence derived from: MDC012215.80:49937..54357- (Malus x domestica
ATGGCTAGTCCTCAGAGAAGCGGTCCGGTCGAGAGGGATATCGACCAGGT
TTGTTCTTTTTCATCAGTTATTTCCCATGGAATTAACACTCAGAGTGAGC
CATGACAAATTTTTTTTGTTCAAATGATGTATTGAGCTTAGTCATTTCAG
CTCATGTTTCCATTTTTCTTCTTTCCATTCTGTTTGCAGGCCATCACAGC
ACTTAAGAAAGGTGCAACTTTGTTAAAATATGGACGCAGAGGGAAGCCGA
AATTCTGCCCATTCCGGCTTTCTAATGTAAGTTGGCTCGACATATAGCCT
TGTTTGGTTTCTGCTCTTTTGGCTCAGATAATTCTGGTTTCGTTTCAGGA
CGAGGCTCTTTTGATATGGTACTCTGGCAAAGAAGAAAAACACCTTAAAC
TTTGTCATGTTTCGACAATTATTCCTGGCCAGCGTACTGTGAGTTTCAGC
TCCCATTCTGTTTTCGGATAAAATCTCCACCAAAGCTTGACTGTAAAATC
TCAATTTTCTTGAACGCTTATGCCTGCTCTCGAAAGAAGCTTACATGGAA
GATTTGTTCTTTGGTGGCTTCACCAATTACCTTCCATAGATAATTATAAA
CATCACTGCGGTTTTTCTTTGCAGGCAATATTTCAGCGGTATCCACGGCC
TGAAAAGGAGTACCAGTCATTTTCGCTTCTATACAACGATAGGTCCTTGG
ACTTGGTGAGTAAATTTGCTACATATATTCAAGGATCATTGATGCAACTG
CATGTATAAAGCACCTGAGAAATTGTATTTTCTGGTATATCATGGTTTAA
TCAGTTACCACCCCCTGCTGGACAGATATGTAAAGACAAAGATGAAGCTG
AAGTTTGGTTTGTTGGTCTTAAGGCGATAATCACTCGAGGTAATTACCGG
AACTGGAGAAGCGAATCAAGATTGGAGGGCACATCAATAGATAGCCCCCA
TGCTCGGACTCGGCGACATTCTCCAACAGTGACACCATTCTGCATTGGGG
TGATTTATCTGTTGTTATTTCTTTTATAAGGAAACAAAGAATATACTTCT
CTTGATGTATCTGGCATTTACGTTTTATTTCTTGGTGTTTTTACCAAATA
CGACAGGATCCAAGAGATACTGAGGGAGTTTCTTTGGAGAATATCCCACA
GAGTAGATTAGGACGAGCATTCGCTGACATAATATCTTATACCGCCACCC
CCAAGAATGCCATACAAGCTGAATCAGTCTCAAATGCATCGTTATCACCT
GTATCTGTGGATAACTCCAATGGTCGAAATTCTGCATCTGAAGCATTTCG
GGTTAGTTTATCTAGTGCTGTAAGCTCGTCTAGTCAAGGTTCTTGTCAAG
ATGATTTTGATACTTTAGGAGATGTTTTTATTTGGGGCGAAGGTATTGGT
GGTGGAGTACTTGGAGGCGGTGTGGATAGAGTAGGGAGCTCATATGGTTC
CAGGACGGATGCTCTTCTGCCTAAGGTATTAGAATCAACAGTGGTCGTAG
ATGTTCACGGAATTGCTTGTGGTGCCAGACATGCTGTTCTAGTCACCAAG
CAAGGGGAAATCTTCAGCTGGGGAGARGAGTCAGGAGGCAGGCTTGGTCA
CGGTGTTGATACAGATGTTTCCCACCCAAAGCTCATTGAGACTCTTAGTG
GGATGAATGTGGAATTAGTGGCATGTGGGGAATATCACACTTGTGCTGTT
ACACTTTCTGGAGATCTCTATACATGGGGTGATGGTACTCATCATTTTGG
CCTGCTTGGGCATGGAAGTGAAGTTAGTCACTGGATTCCCAAAAAGGTAT
GTGGTCACTTGGAAGGTATCCACATATCCTATATCGCTTGTGGACCGTGG
CATACAGCTGCTGTGACATCAGGTGGCCAGTTATTTACCTTTGGGGATGG
AACTTTTGGTGCCTTAGGACATGGGGATCATAGTAGCACAAGCACGCCGC
GGGAGGTGGAGACTTTGAGAGGGCTAAGAACAACAAGGATTGCTTGTGGT
ATTTGGCACACTGCTGCAGTTGTTGAAGTAGTGAATGAATCGTCTAGCCC
CGAGACTTCTAGTAACTCTTCATATGGGAAGCTCTACACTTGGGGTGATG
GTGATAAAGGCCGACTTGGACATGGTGATGAACAATCTAAGCTAGTTCCT
GCACGCGTAGCTGCATTGGTTGATAAAAATATTTGTCAAGTAGCCTGTGG
CCATAATCTCACAGTTGGCCTTACAACCTCAGGACAAGTATATACGATGG
GAAGTGCTGCTTATGGACAGCTTGGGAATCCTTCAGCTGACGGGAAAGTT
CCCACTCTGGTCGAGGGTGAAATTAGTTTTGTGGAAGAAATTGCATGCGG
TTCTTATCATGTTGCAGTTTTGACTTCCAAGACTGAGGTTTATACTTGGG
GAAGGGGTTCGAATGGGCAACTAGGCCACGGAGACAATGATCATAGATAT
ACGCCTACCCCTGTTGATTGTATGAAGGATAAGCAAGTAAAGAGTGTAGC
ATGTGGTCCAAACCTAACGGCGGCCATTTGTCTTCATAAATGGGTATCAA
GTGCTGACCATTCTGTTTGCTCTGATTGTCACAATCCCTTTGGTTTCAGA
AGAAAACGTCACAATTGTTACAACTGTGGGCTAGTCTTCTGCAAAGCATG
CAGCAGCAAGAAATCTCTSRAAGCTGCCTTGGCTCCAAATACGAACAAGC
CATATCGGGTGTGCGACGAGTGTTATAGTAAACTGAAGAAGGCTGCAGAA
GCCAGTTCTGCTTTGCGAAGTCCAATAAGAAGTGGAAATATGCGTCCTAA
ATCCCATGAGGTGACAGATAAAGAAAATCTGATCCCTATGTTACGGGCAA
CGCTCTCCAGACTCTCTTCTTTTGGCACAAACAACCAGGGCGAAAGCAAG
CAGCTTAAGCAAGAAAGAAAACCAGAAGTGCGTGATAATCGTGTCTTCCC
AGATTTGAATGGACAGTTGCAGTTAGGGGGTTTTAATTTGACAAGAGCAT
CAACTCCTCCCACTGCAGGTTCAGAAAAAGTTGTTTCGCCTTCTATTCCT
GCCTCTAAAAAGGCTTCTCGGTATACATCTCCTGTTTCAGGAAAGTCAAG
TCCACGCCGGTCTTCTGAAGAAATCATTCTTGAGGATTCAAAGCATATAA
ATGGAAGTTTGAGCCAAGAAATCATACAATTAAGGACACAGGTAGGCCTT
TTTATAGTGCTTTAATGTCTACAATCTAATAGTTGATGACATCCGTGCAT
ATAACTAAATCTTTTGGTGGGTTCTGGGATCCAAATCTTTGACATTCTGT
AGCTGCTGAAGAGAGAGGAACTAGCCTAGCTTATGAACTGAGGAATTGGA
TTAAAATTTGCATCCTTACGAAAATTAGTTAAAGTAATGTGTATACATTA
CGCTGAAATTGTTCCAAAAACTATGTAGGTAGAAGGCCTTACTCTCAAAT
CCCAGCATCTTGAAGCTGAACTTCAACGCACATCAAAGAAATTGAAGGAG
GTCTCTGCAATAGCCGCAGATGAAGCTGAAAAACGCAAATCTGCAAAAGA
AGTTATTAAATCTCTAACTGCTCAGGTTGCAACCGTTCTGTGTTCGATGT
TCTGTTTTTTCTTATGCTTTCTGATTCTTTGGCGTTGCAACTTATCCTAT
CCTCCGTAATTTTCTAGTGTTACACTGATTTTACTTGTCGAACAGTTGAA
GGAGATGTCTGAAAGAATGCCTGAAGGGCAGATGAGTCACTGCAATACAG
GTTCTATTTCGCATGCAATCAGCTTTGGAAACCAGTTATCCAAAGAGCCC
TCTCTGTCAAACATAAATACTTCGCAAACTTTGTCCAATGGCAATTCAAT
GGATCGAATCCTAACTAATGGGACTAAATCACCAACTGGAAAGTCCGAGC
GGGTGCTACAAGATGAACCTGGTGTATATATAACTCTAAGCTCCTTGCCA
GACGGCAGTAATGAACTCAGGCGTGTTCGCTTCAGGTACCTCTCTCCTCC
TCCCCCTTTATTTTCAGAGTCAGATAAATACAACCAAGTAAATATCTAAG
GCCATGGCTTAGGCTGCAGAAGATTCACTCTGTTTCTTTTTCGGCCTGCC
ACGTTGTGCCGTCATTGCATTTGAATCCATTACCTTGAGGAATCTCCATC
AGCTTTCTCACATTATCCTACCATTTCTGAATCATTCATATCTATGTTAG
TTTTCCATAGTCTAGATTTTTCGAACGAAACTATTACAATCGACTTTATA
ATATCACGGTGCGGATTGATGAAATGTATTTGATGCCCTCTATCTTGTTT
GCTGAAATTTAAATTGTTGTTCGACAGCCGGAGACATTTCACTGAAGAAG
CAGCGGAGAGATGGTGGGCTGAAAATGGGGTAAAGTTATGTGAGCGGCAC
AACATAAAAGGTGCAGAGTAA
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Coding sequence (CDS) from alignment at MDC012215.80:49937..54357-

>MDP0000937952 ID=MDP0000937952; Name=MDP0000937952; organism=Malus x domestica; type=CDS; length=3117bp; location=Sequence derived from: MDC012215.80:49937..54357- (Malus x domestica
ATGGCTAGTCCTCAGAGAAGCGGTCCGGTCGAGAGGGATATCGACCAGGC
CATCACAGCACTTAAGAAAGGTGCAACTTTGTTAAAATATGGACGCAGAG
GGAAGCCGAAATTCTGCCCATTCCGGCTTTCTAATGACGAGGCTCTTTTG
ATATGGTACTCTGGCAAAGAAGAAAAACACCTTAAACTTTGTCATGTTTC
GACAATTATTCCTGGCCAGCGTACTGCAATATTTCAGCGGTATCCACGGC
CTGAAAAGGAGTACCAGTCATTTTCGCTTCTATACAACGATAGGTCCTTG
GACTTGTTACCACCCCCTGCTGGACAGATATGTAAAGACAAAGATGAAGC
TGAAGTTTGGTTTGTTGGTCTTAAGGCGATAATCACTCGAGGTAATTACC
GGAACTGGAGAAGCGAATCAAGATTGGAGGGCACATCAATAGATAGCCCC
CATGCTCGGACTCGGCGACATTCTCCAACAGTGACACCATTCTGCATTGG
GGATCCAAGAGATACTGAGGGAGTTTCTTTGGAGAATATCCCACAGAGTA
GATTAGGACGAGCATTCGCTGACATAATATCTTATACCGCCACCCCCAAG
AATGCCATACAAGCTGAATCAGTCTCAAATGCATCGTTATCACCTGTATC
TGTGGATAACTCCAATGGTCGAAATTCTGCATCTGAAGCATTTCGGGTTA
GTTTATCTAGTGCTGTAAGCTCGTCTAGTCAAGGTTCTTGTCAAGATGAT
TTTGATACTTTAGGAGATGTTTTTATTTGGGGCGAAGGTATTGGTGGTGG
AGTACTTGGAGGCGGTGTGGATAGAGTAGGGAGCTCATATGGTTCCAGGA
CGGATGCTCTTCTGCCTAAGGTATTAGAATCAACAGTGGTCGTAGATGTT
CACGGAATTGCTTGTGGTGCCAGACATGCTGTTCTAGTCACCAAGCAAGG
GGAAATCTTCAGCTGGGGAGARGAGTCAGGAGGCAGGCTTGGTCACGGTG
TTGATACAGATGTTTCCCACCCAAAGCTCATTGAGACTCTTAGTGGGATG
AATGTGGAATTAGTGGCATGTGGGGAATATCACACTTGTGCTGTTACACT
TTCTGGAGATCTCTATACATGGGGTGATGGTACTCATCATTTTGGCCTGC
TTGGGCATGGAAGTGAAGTTAGTCACTGGATTCCCAAAAAGGTATGTGGT
CACTTGGAAGGTATCCACATATCCTATATCGCTTGTGGACCGTGGCATAC
AGCTGCTGTGACATCAGGTGGCCAGTTATTTACCTTTGGGGATGGAACTT
TTGGTGCCTTAGGACATGGGGATCATAGTAGCACAAGCACGCCGCGGGAG
GTGGAGACTTTGAGAGGGCTAAGAACAACAAGGATTGCTTGTGGTATTTG
GCACACTGCTGCAGTTGTTGAAGTAGTGAATGAATCGTCTAGCCCCGAGA
CTTCTAGTAACTCTTCATATGGGAAGCTCTACACTTGGGGTGATGGTGAT
AAAGGCCGACTTGGACATGGTGATGAACAATCTAAGCTAGTTCCTGCACG
CGTAGCTGCATTGGTTGATAAAAATATTTGTCAAGTAGCCTGTGGCCATA
ATCTCACAGTTGGCCTTACAACCTCAGGACAAGTATATACGATGGGAAGT
GCTGCTTATGGACAGCTTGGGAATCCTTCAGCTGACGGGAAAGTTCCCAC
TCTGGTCGAGGGTGAAATTAGTTTTGTGGAAGAAATTGCATGCGGTTCTT
ATCATGTTGCAGTTTTGACTTCCAAGACTGAGGTTTATACTTGGGGAAGG
GGTTCGAATGGGCAACTAGGCCACGGAGACAATGATCATAGATATACGCC
TACCCCTGTTGATTGTATGAAGGATAAGCAAGTAAAGAGTGTAGCATGTG
GTCCAAACCTAACGGCGGCCATTTGTCTTCATAAATGGGTATCAAGTGCT
GACCATTCTGTTTGCTCTGATTGTCACAATCCCTTTGGTTTCAGAAGAAA
ACGTCACAATTGTTACAACTGTGGGCTAGTCTTCTGCAAAGCATGCAGCA
GCAAGAAATCTCTSRAAGCTGCCTTGGCTCCAAATACGAACAAGCCATAT
CGGGTGTGCGACGAGTGTTATAGTAAACTGAAGAAGGCTGCAGAAGCCAG
TTCTGCTTTGCGAAGTCCAATAAGAAGTGGAAATATGCGTCCTAAATCCC
ATGAGGTGACAGATAAAGAAAATCTGATCCCTATGTTACGGGCAACGCTC
TCCAGACTCTCTTCTTTTGGCACAAACAACCAGGGCGAAAGCAAGCAGCT
TAAGCAAGAAAGAAAACCAGAAGTGCGTGATAATCGTGTCTTCCCAGATT
TGAATGGACAGTTGCAGTTAGGGGGTTTTAATTTGACAAGAGCATCAACT
CCTCCCACTGCAGGTTCAGAAAAAGTTGTTTCGCCTTCTATTCCTGCCTC
TAAAAAGGCTTCTCGGTATACATCTCCTGTTTCAGGAAAGTCAAGTCCAC
GCCGGTCTTCTGAAGAAATCATTCTTGAGGATTCAAAGCATATAAATGGA
AGTTTGAGCCAAGAAATCATACAATTAAGGACACAGGTAGAAGGCCTTAC
TCTCAAATCCCAGCATCTTGAAGCTGAACTTCAACGCACATCAAAGAAAT
TGAAGGAGGTCTCTGCAATAGCCGCAGATGAAGCTGAAAAACGCAAATCT
GCAAAAGAAGTTATTAAATCTCTAACTGCTCAGTTGAAGGAGATGTCTGA
AAGAATGCCTGAAGGGCAGATGAGTCACTGCAATACAGGTTCTATTTCGC
ATGCAATCAGCTTTGGAAACCAGTTATCCAAAGAGCCCTCTCTGTCAAAC
ATAAATACTTCGCAAACTTTGTCCAATGGCAATTCAATGGATCGAATCCT
AACTAATGGGACTAAATCACCAACTGGAAAGTCCGAGCGGGTGCTACAAG
ATGAACCTGGTGTATATATAACTCTAAGCTCCTTGCCAGACGGCAGTAAT
GAACTCAGGCGTGTTCGCTTCAGCCGGAGACATTTCACTGAAGAAGCAGC
GGAGAGATGGTGGGCTGAAAATGGGGTAAAGTTATGTGAGCGGCACAACA
TAAAAGGTGCAGAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR000306Znf_FYVE
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II
IPR011011Znf_FYVE_PHD
IPR011993PH-like_dom_sf
IPR013083Znf_RING/FYVE/PHD
IPR013591Brevis_radix_dom
IPR017455Znf_FYVE-rel
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding