Canker-HB10

Haplotype Block Overview

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr10	chromosome	Chr10:32736814..35905742 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	Karlström A, Gómez-Cortecero A, Nellist CF, Ordidge M, Dunwell JM, Harrison RJ. Identification of novel genetic regions associated with resistance to European canker in apple.. BMC plant biology. 2022 Sep 21; 22(1):452.

Publications


Year	Publication
2022	Karlström A, Gómez-Cortecero A, Nellist CF, Ordidge M, Dunwell JM, Harrison RJ. Identification of novel genetic regions associated with resistance to European canker in apple.. BMC plant biology. 2022 Sep 21; 22(1):452.

Stock Haplotype

Name	Haplotype
Golden Delicious	hb10-shared-r1

Map Positions


Haplotype Block	Map Name	Linkage Group	Start	Stop
Canker-HB10	Apple-consensus-Allard-2016	LG10	47	56

Projects


Project Name
Apple-canker-Karlstrom-Haplotype-2020

Haplotypes

Marker	hb10-gala-s	hb10-sel1-s	hb10-sel3-s	hb10-sel4-s	hb10-shared-r1	hb10-shared-r2
RosBREEDSNP_SNP_AG_28354774_Lg10_148145_MAF30_148145_exon2	G	G	A	G	A	G
RosBREEDSNP_SNP_AG_29025500_Lg10_01570_MAF20_1630596_exon8	A	A	G	A	A	A
RosBREEDSNP_SNP_CA_29020445_Lg10_01570_MAF40_MDP0000131641_exon2	A	C	A	C	C	A
RosBREEDSNP_SNP_CA_30206374_Lg10_00734_MAF20_1635521_exon1	C	C	C	C	A	C
RosBREEDSNP_SNP_CT_27656951_Lg10_268464__268464_exon1	A	A	A	A	G	A
RosBREEDSNP_SNP_CT_28632998_Lg10_CONS61_MAF50_412419_exon1	A	G	G	A	G	A
RosBREEDSNP_SNP_GA_28354787_Lg10_148145_MAF30_148145_exon2	A	A	A	A	G	A
SNP_FB_0037831	A	A	A	A	A	A
SNP_FB_0037837	A	G	G	G	A	A
SNP_FB_0037842	A	A	A	A	G	A
SNP_FB_0037843	G	G	G	G	A	G
SNP_FB_0038512	C	C	C	C	C	C
SNP_FB_0038518	C	C	A	C	C	C
SNP_FB_0039054	G	A	G	G	G	G
SNP_FB_0039070	G	G	G	G	G	G
SNP_FB_0039680	G	G	G	G	A	G
SNP_FB_0039713	G	A	A	A	A	G
SNP_FB_0040123	A	C	C	C	C	A
SNP_FB_0040125	G	A	A	A	A	G
SNP_FB_0040406	C	C	A	C	A	A
SNP_FB_0040410	A	A	C	A	C	C
SNP_FB_0040423	A	A	G	A	G	G
SNP_FB_0040453	A	A	C	A	C	A
SNP_FB_0040454	A	A	A	A	A	A
SNP_FB_0040463	G	G	A	G	G	A
SNP_FB_0041082	A	G	G	A	G	G
SNP_FB_0605148	A	A	C	A	A	A
SNP_FB_0605151	G	G	G	G	G	A
SNP_FB_0605152	G	G	A	G	A	G
SNP_FB_0605153	C	C	A	C	A	A
SNP_FB_0605824	G	G	A	G	G	A
SNP_FB_0605830	G	A	G	G	G	G
SNP_FB_0835173	C	C	A	C	C	C
SNP_FB_0835174	G	A	G	G	G	G
SNP_FB_0835177	A	C	C	A	C	A

Annotated Terms

The following terms have been associated with this haplotype_block:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
28:resistance to Neonectria ditissima	resistance to Neonectria ditissima