Prunus armeniaca Yinxiangbai Genome v1.0 Assembly & Annotation
Overview
Publication Zhang Q, Zhang D, Yu K, Ji J, Liu N, Zhang Y, Xu M, Zhang YJ, Ma X, Liu S, Sun WH, Yu X, Hu W, Lan SR, Liu ZJ, Liu W. Frequent germplasm exchanges drive the high genetic diversity of Chinese-cultivated common apricot germplasm. Hortic Res. 2021 Oct 1;8(1):215. doi: 10.1038/s41438-021-00650-8. Supplementary Table 2: Assembly statistics of the P. armeniaca ‘Yinxiangbai’ genome.
Supplementary Table 3: The length of chromosome by Hi-C assembly of P. armeniaca ‘Yinxiangbai’ genome.
Supplementary Table 4: BUSCO assessment of gene annotation of P. armeniaca ‘Yinxiangbai’ genome.
Homology Analysis
Homology of the Prunus armeniaca Yinxiangbai genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6 for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2023-07), and UniProtKB/TrEMBL (Release 2023-07) databases. The best hit reports are available for download in Excel format. Protein Homologs
Assembly
The Prunus armeniaca Yinxiangbai genome v1.0 assembly file is available in FASTA format. Downloads
Gene Predictions
The Prunus armeniaca Yinxiangbai genome v1.0.a1 gene prediction files are available in GFF3 and FASTA format. Downloads
Functional Analysis
Functional annotation for the Prunus armeniaca Yinxiangbai genome v1.0 are available for download below. The P. armeniaca Yinxiangbai genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS). Downloads
Transcript Alignments
Transcript alignments were performed by the GDR Team of Main Bioinformatics Lab at WSU. The alignment tool 'BLAT' was used to map transcripts to the Prunus armeniaca Yinxiangbai genome assembly. Alignments with an alignment length of 97% and 97% identify were preserved. The available files are in GFF3.
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