BLAST | GDR

BLAST Search

Search for one or more of your sequences (using BLAST). First pick a query type (nucleotide or protein). You will be able to set search parameters on the next page. Choose the appropriate program based on the Query type and Target database type. Please click on the program name to view the search form.

Query Type	Database Type	BLAST Program
Nucleotide	Nucleotide	blastn: Search a nucleotide database using a nucleotide query.
Nucleotide	Protein	blastx: Search protein database using a translated nucleotide query.
Protein	Nucleotide	tblastn: Search translated nucleotide database using a protein query.
Protein	Protein	blastp: Search protein database using a protein query.

BLAST References
1. Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403–410.
2. Camacho,C., Coulouris,G., Avagyan,V., Ma,N., Papadopoulos,J., Bealer,K., and Madden T.L. (2009) BLAST+: architecture and applications. BMC Bioinformatics, 10:421, doi: 10.1186/1471-2105-10-421.

Description and source of BLAST databases

Database Name	Source
Cerasus x yedoensis v1.0 genome	Shirasawa et al. 2019
Fragaria vesca v4.0.a1 genome	Edger et al. 2017
Fragaria vesca v2.0.a1 genome	Tennessen et al. 2014
Fragaria vesca v1.1 genome	Shulaev et. al. 2010
Fragaria vesca v1.0 genome	Shulaev et. al. 2010
Fragaria vesca CFRA 2339 v1.0 genome	Alger et. al. 2021
Fragaria x ananassa Camarosa v1.0 genome	Edger et al. 2019
Fragaria x ananassa FAN r1.1 genome	Hirakawa et al. 2013
Fragaria x ananassa FANhybrid r1.2 genome	Hirakawa et al. 2013
Fragaria iinumae FII r1.1 genome	Hirakawa et al. 2013
Fragaria iinumae v1.0 genome	Edger et al. 2019
Fragaria nilgerrensis v1.0 genome	Zhang et al. 2020
Fragaria nilgerrensis SCBG v1.0 genome	Feng et al. 2020
Fragaria nipponica FNI r1.1 genome	Hirakawa et al. 2013
Fragaria nubicola FNU r1.1 genome	Hirakawa et al. 2013
Fragaria nubicola SCBG v1.0 genome	Feng et al. 2020
Fragaria orientalis FOR r1.1 genome	Hirakawa et al. 2013
Fragaria viridis SCBG v1.0 genome	Feng et al. 2020
Gillenia trifoliata v1.0 genome	Ireland et al. (submitted)
Malus baccata v1.0 genome	Chen et al. 2019
Malus x domestica HFTH1 v1.0 genome	Zhang et al. 2019
Malus x domestica GDDH13 v1.1 genome	Daccord et al. 2017
Malus x domestica Gala haploid v1.0 genome	Sun et al. 2020
Malus x domestica Gala diploid v1.0 genome	Sun et al. 2020
Malus x domestica v3.0.a1 genome	Velasco et. al. 2010
Malus x domestica v1.0 genome	Velasco et. al. 2010
Malus sieversii apple-FOX Arabidopsis library sequences	Wisniewski et al. (submitted)
Malus sieversii haploid v1.0 genome	Sun et al. 2020
Malus sieversii diploid v1.0 genome	Sun et al. 2020
Malus sylvestris happloid v1.0 genome	Sun et al. 2020
Malus sylvestris diploid v1.0 genome	Sun et al. 2020
Potentilla micrantha v1.0 genome	Buti et al. 2018
Prunus armeniaca v1.0 genome	Jiang et al. 2019
Prunus armeniaca cv. Stella v1.0 genome	Groppi et al. 2021
Prunus armeniaca Longwangmao v1.0 genome	Wang et al. 2021
Prunus armeniaca Marouch n14 v1.0 genome	Groppi et al. 2021
Prunus armeniaca Sungold v1.0 genome	Wang et al. 2021
Prunus avium v1.0.a1 genome	Shirasawa et al. 2017
Prunus avium Tieton v1.0 genome	Wang et al. 2020
Prunus avium Tieton v2.0 genome	Wang et al. 2020
Prunus davidiana v1.0 genome	Cao et al. 2020
Prunus domestica v1.0 draft genome	Dardick et al. 2019
Prunus dulcis Lauranne v1.0 genome	Sánchez-Pérez et al. 2019
Prunus dulcis v2.0 genome	Pere Arús and Tyler Alioto
Prunus ferganensis v1.0 genome	Cao et al. 2020
Prunus kansuensis v1.0 genome	Cao et al. 2020
Prunus Mandshurica CH264_4 v1.0 genome	Groppi et al. 2021
Prunus mira v1.0 genome	Cao et al. 2020
Prunus persica v1.0 genome	The International Peach Genome Initiative 2013
Prunus persica v2.0.a1 genome	Verde et al. 2017
Prunus persica Chinese Cling v1.0 genome	Cao et al to be submitted
Prunus salicina Zhongli No. 6 v1.0.a1 genome	Huang et al. 2020
Prunus salicina Sanyueli v1.0.a1 genome	Liu et al. 2020
Prunus salicina Sanyueli FAAS v1.0.a1 genome	Fang et al. (submitted)
Prunus sibirica CH320_5 v1.0 genome	Groppi et al. 2021
Prunus sibirica F106 v1.0.a1 genome	Wang et al. 2021
Prunus yedoensis v1.0 genome	Baek S et al. 2018
Pyrus betulifolia v1.0 genome	Dong et al. 2019
Pyrus communis v1.0 genome	Chagné et al. 2014
Pyrus bretschneideri v1.1 genome	Xue et al. 2018
Pyrus pyrifolia v1.0 genome	Shirasawa et al. 2020
Pyrus ussuriensis x communis Zhongai 1 v1.0 genome	Wang et al. 2019
Rosa chinensis v1.0 genome	Hibrand et al. 2018
Rosa chinensis homozygous v2.0 genome	Raymond et al. 2018
Rosa multiflora v1.0 genome	Nakamura et al. 2017
Rubus occidentalis v1.0.a1 genome	VanBuren et al. 2016
Rubus occidentalis v1.1 genome	Jibran et al. 2018
Rubus occidentalis v3.0 genome	Vanburen et al. 2018
Rubus ulmifolius v1.0 genome	Aiden et al, 2020
GDR RefTrans	Species or genus specific assemblies of filtered RNA-seq reads and unigenes performed by GDR
GDR unigene V5	Genus or family specific assemblies of NCBI dbEST data performed by GDR
Rosaceae Conserved Ortholog Set	Cabrera et al. 2009