BLAST


BLAST Search

Search for one or more of your sequences (using BLAST). First pick a query type (nucleotide or protein). You will be able to set search parameters on the next page. Choose the appropriate program based on the Query type and Target database type. Please click on the program name to view the search form.

Query Type Database Type BLAST Program
Nucleotide Nucleotide blastn: Search a nucleotide database using a nucleotide query.
Protein blastx: Search protein database using a translated nucleotide query.
Protein Nucleotide tblastn: Search translated nucleotide database using a protein query.
Protein blastp: Search protein database using a protein query.
BLAST Reference
Altschul,S.F., Gish,W., Miller,W., Myers,E.W. and Lipman,D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403–410.

Description and source of BLAST databases

Database Name Source
Fragaria vesca v4.0.a1 genome Edger et al. 2017
Fragaria vesca v2.0.a1 genome Tennessen et al. 2014   
Fragaria vesca v1.1 genome Shulaev et. al. 2010
Fragaria vesca v1.0 genome Shulaev et. al. 2010 
Fragaria x ananassa FAN r1.1 genome Hirakawa et al. 2013
Fragaria x ananassa FANhybrid r1.2 genome Hirakawa et al. 2013
Fragaria iinumae FII r1.1 genome Hirakawa et al. 2013
Fragaria nipponica FNI r1.1 genome Hirakawa et al. 2013
Fragaria nubicola FNU r1.1 genome Hirakawa et al. 2013
Fragaria orientalis FOR r1.1 genome Hirakawa et al. 2013
Malus x domestica GDDH13 v1.1 genome Daccord et al. 2017
Malus x domestica v3.0.a1 genome Velasco et. al. 2010
Malus x domestica v1.0 genome Velasco et. al. 2010
Potentilla micrantha v1.0 genome Buti et al. 2018
Prunus avium v1.0.a1 genome Shirasawa et al. 2017
Prunus dulcis v2.0 genome Pere Arús and Tyler Alioto
Prunus persica v1.0 genome The International Peach Genome Initiative 2013
Prunus persica v2.0.a1 genome Verde et al. 2017
Prunus yedoensis v1.0 genome Baek S et al. 2018
Pyrus communis v1.0 genome Chagné et al. 2014
Rosa chinensis v1.0 genome  Hibrand et al. 2018
Rosa chinensis homozygous v2.0 genome Raymond et al. 2018
Rosa multiflora v1.0 genome  Nakamura et al. 2017
Rubus occidentalis v1.0.a1 genome VanBuren et al. 2016
Rubus occidentalis v1.1 genome Dzierzon et al. 2017
Rubus occidentalis v3.0 genome Jibran et al. 2018
GDR RefTrans Species or genus specific assemblies of filtered RNA-seq reads and unigenes performed by GDR
GDR unigene V5 Genus or family specific assemblies of NCBI dbEST data performed by GDR
Rosaceae Conserved Ortholog Set Cabrera et al. 2009