Work Completed

[Outreach] GDR Email Archive Page Available (4/25)

[Data] Two Argentina (Portentilla) genomes available (4/25)

[Data] Rubus L. subgenus Rubus Watson Genome (4/25)

[Outreach] BIMS Video tutorial: How to use the accession template (4/25)

[Outreach]  Monthly email: Learn how to use the Field Book App with BIMS (3/25)

[Outreach] BIMS Video tutorial: How to create trait descriptions in BIMS (3/25)

[Outreach]  Monthly email: Learn how to get started with BIMS (2/25)

[Data] Fragaria x ananassa Florida Brilliance Genome V1.0 available (3/25)

[Outreach]  Jan 2025 Newsletter available (2/25)

[Data] Fragaria x ananassa FL17.68-110 Genome v1.0 available (2/25)

[Data] Fragaria iinumae KIB CAS Genome v2.0 available (2/25)

[Data] Full analysis done for Cerasus speciosa IZO01 Genome v1.0 (2/25)

[Data] New GWAS, QTL, marker, map, genotype, and phenotype data are available (2/25)

[Data] Prunus zhengheensis Genome v1.0 available (2/25)

[Outreach]  Jan 2025 Newsletter available (2/25)

[Outreach] BIMS Video tutorial: How to add team members to your BIMS program (1/25)

[Outreach] BIMS Video tutorial: How to create a breeding program in BIMS (1/25)

[Outreach] BIMS Video tutorial: How to create a BIMS account (1/25)

[Data] Prunus mume Nanko Genome available (12/24)

[Data] Three new octoploid strawberry WGS available (12/24)

[Outreach]  Video Tutorial: Find orthologs and corresponding function (11/24)

[Outreach]  Oct 2024 Newsletter available (10/23)

[Data] New GWAS, QTL, marker, and map data are available (10/24)

[Tools] Genomes with aligned QTLs displayed in MapViewer (9/24)

[Outreach]  New Video Tutorial: How cross-search gene/mRNA names (9/24)

[Outreach] Database workshop and presentations at ASHS (9/24)

[Data] New GWAS, QTL, marker, map and phenotype data are available (9/24)

[Data] Genome for Malus coronaria and Malus ioensis available (9/24)

[Outreach]  New Video Tutorial: How to search markers by trait and view genome alignment (8/24)

[Data] New JBrowse tracks for QTLs, GWAS, and markers for Rosa, Rubus, and Pyrus genomes (8/24)

[Data] New PathwayCyc available for almond and pear (8/24)

[Data] New JBrowse tracks for QTLs, GWAS, and markers (7/24)

[Data] Genome data for Fragaria x ananassa Florida Brilliance available (7/24)

[Data] Genome data for Fragaria x ananassa FL 16.33-8 available (7/24)

[Data] Malus x domestica Golden Delicious GDT2T Genome available (7/24)

[Outreach] BIMS workshop at NAPB 2024! (7/24)

[Outreach] GDR team presentations at Plant Biology 2024! (7/24)

[Outreach] New Video Tutorial: Learn how to use the ortholog/paralog search! (6/24)

[Data] Strawberry Crop Ontology developed and submitted to CO (6/24)

[Data] Synteny data between Rosaceae genomes and Arabidopsis genome available (6/24)

[Data] New GWAS, QTL, map, and marker data available (6/24)

[Data] Cerasus speciosa IZO01 Genome available (6/24)

[Data] Golden Delicious haplotype-resolved genome available (6/24)

[Tools] Added link to the genome page from the MapViewer GWAS page (6/24)

[Tools] BIMS supports Field Book sync function 

[Tools] Protein FASTA file download available from sequence search (5/24)

[Tools] Trait Descriptor Search updated for new data format (5/24)

[Outreach] New Video Tutorial: Learn How to download protein sequences! (5/24)

[Data] Genome data for Fragaria x ananassa FL 20.82-27 available (5/24)

[Data] Genome data for Prunus dulcis Texas Genome v3.0 available (5/24)

[Outreach] Genome/gene naming guideline updated following AgBioData recommendation (4/24)

[Data] Whole genome data for Malus x domestica WA 38 available (4/24)

[Data] New GWAS, QTL, phenotype, and genotype data available (4/24)

[Data] New Cyc available for two apple genomes (4/24)

[Data] Stadardized Rosaceae Trait Terms Updated (3/24)

[Data] New Prunus GWAS data available (3/24)

[Outreach] New Video Tutorial: Learn how to download markers from a map region! (3/24)

[Data] Whole genome data for Prunus cerasus Montmorency v1.0.a2 (3/24)

[Tools] BIMS: more permission levels are available (3/24)

[Data] Three apple genomes, Fuji and two rootstocks, M9 and MM106, available (3/24)

[Data] Prunus armeniaca Yinxiangbai v1.0 available (2/24)

[Outreach] Summary of the first RosEXEC available in the GDR newsletter (2/24)

[Outreach] New Video Tutorial: Learn how to find trait associated markers! (2/24)

[Data] New GWAS, QTL, phenotype, and genotype data available (1/24)

[Data] Haplotype data for Fragaria x ananassa Yanli Genome v1.0 (1/24)

[Data] Fragaria moupinensis haplotype Genome v1.0 available (1/24)

[Outreach] Workshop and presentations at PAG 31 (1/24)

[Outreach] Monthly GDR email with Yearly GDR in Review  (12/2023)

[Data] Fragaria x ananassa Benihoppe Genome v1.0 available (12/23)

[Data] Prunus avium Regina Genome v1.0 available (12/23)

[Data] Malus x domestica Antonovka 172670-B Genome v1.0 available (11/23)

[Data] Malus angustifolia Genome v1.0 available (11/23)

[Outreach] New Video Tutorial: Learn how to view correspondences between genomes and genetic maps! (11/23)

[Data] Pyrus communis d'Anjou Genome v2.3.a1 available (11/23)

[Data] Malus x domestica Golden Delicious Genome NCBI annotation available (11/23)

[Outreach] October 2023 newsletter available (10/23)

[Data] Rubus 13K SNP array and KASP assay data available (10/23)

[Outreach] RosEXEC October quarterly meeting minutes available (10/23)

[Data] Whole genome data for Prunus davidiana ZXST Haplotype Genome available (10/23)

[Data] Whole genome data for Prunus campanulata available (10/23)

[Data] New expression datasets available to view in heatmap (9/23)

[Outreach] New Video Tutorial: Learn how to create an expression heatmap and view data! (9/23)

[Data] Strawberry Pangenome constructed from six diploid Fragaria species are available (9/23)

[Data] New rose QTL, marker, and map data available (9/23)

[Data] Full analysis results available for Fragaria chiloensis 'GP33' Genome v1.0 (7/23)

[Data] Whole genome data for Fragaria vesca ‘Hawaii 4’ available (7/23)

[Data] Whole genome data for Malus x domestica 'Hanfu' available (7/23)

[Data] Whole genome data for Prunus mongolica available (7/23)

[Data] Whole genome data for three Fragaria genomes available (6/23)

[Outreach] GWAS data template available! (5/23)

[Data] Whole genome data for Prunus salicina Lindl cv. Wushancuili (5/23)

[Data] New SNP array, QTL, marker, map, and haplotype data available (4/23)

[Data] Synteny analysis done between Gillenia trifoliata Genome and five Malus and Pyrus genomes (4/23)

[Data] Whole genome data for Malus fusca (4/23)

[Tools] Ortholog page added to gene/mRNA page (3/23)

[Outreach] New Video Tutorial: Learn how to view genomes linked to genetic maps! (3/23)

[Outreach] GDR workshop at RGC11 (3/23)

[Outreach] New Video Tutorial: Learn how to search markers (2/23)

[Tools] Toolbar for selecting colors for GWAS display in MapViewer (2/23)

[Tools] Crosslink between GDR and Fruit and Nut Database (2/23)

[Tools] MegaSearch updated to allow searching records with empty fields (e.g. for searching genes without any functional annotation) (2/23)

[Outreach] January 2023 GDR Newsletter (1/23)

[Data] New GWAS, QTL, marker, map, and genotype data (1/23)

[Data] Whole genome data for Potentilla anserina (1/23)

[Data] Whole genome data for Eriobotrya japonica (1/23)

[Data] Whole genome data for Prunus cerasus cv. 'Montmorency' (1/23)

[Data] Whole genome data for Prunus fruticosa 27e12(2) (1/23)

[Data] Whole genome data for Fragaria x ananassa Yanli Genome v1.0 (1/23)

[Tools] Gene annotation template and loader created (1/23)

[Tools] MegaSearch updated to query GWAS (1/23)

[Tools] MapViewer updated to display GWAS data (1/23)

[Data] New Cyc available for apple genome v1.0 NCBI annotation (12/22)

[Data] Methylation tracks for strawberry mutants available in JBrowse (12/22)

[Tools]Template/loader for GWAS data created (12/22)

[Outreach] New video tutorial: Overlaying Omics Data in PathwayCyc (11/22)

[Tools] BIMS/MCL made compatible with PHP8

[Outreach] October 2022 GDR Newsletter (10/22)

[Data] Whole genome data for Pyrus communis d'Anjou (10/22)

[Tools] Ortholog Search Powered by MegaSearch (10/22)

[Tools] TripalMap 2.0 released (10/22)

[Tools] ChadoSearch v2.7 for Drupal 7 released

[Tools] Tripal MegaSearch v1.4 for Drupal 7 released

[Outreach] New video tutorial: BLAST to mRNA details to JBrowse (9/22)

[Data] Whole genome data for Malus x domestica Honeycrisp (9/22)

[Data] Whole genome data for Fragaria x ananassa Florida Brilliance (9/22)

[Data] Whole genome data for Rubus idaeus Joan J Genome v2.0 (9/22)

[Data] Whole genome data for Fragaria x ananassa FL15.89-25 (9/22)

[Data] Whole genome data for Prunus dulcis Nonpareil (9/22)

[Data] Whole genome data for Prunus humilis (9/22)

[Tools] Data templates - ORCID/DOI enabled in data loading templates (8/22)

[Tools] BIMS - Trait descriptor export (BIMS-Field Book) through BrAPI enabled (8/22)

[Tools] MegaSearch - Accordion style form added in query section (8/22)

[Tools] MapViewer - Resolution of the map comparison view improved (8/22)

[Outreach] New short video tutorial - How to use MegaSearch for Genetic Maps (8/22)

[Tools] New search pages available for Trait and Trait Descriptor (8/22)

[Tools] Trait and dataset pages updated with more hyperlinks (8/22)

[Outreach] GDR presentations at ASHS, ASPB, ISHS, and PAG 2022 available (8/22)

[Tools] BIMS - Importing public trait descriptors from GDR to private program enabled (7/22)

[Tools] Mapviewer - layout of the landing page improved (7/22)

[Outreach] July 2022 GDR Newsletter (7/22)

[Data] Whole genome data for Rubus argutus Hillquist (7/22)

[Outreach]  New short video tutorial 'How to use MegaSearch for QTL'! (6/22)

[Data] Whole genome data for Fragaria vesca Yellow Wonder (6/22)

[Data] Whole genome data for Fragaria x ananassa FL15.89-25 (6/22)

[Outreach] New short video tutorial 'How to use the BLAST tool! (5/22)

[Tools] New corresponding matrices in MapViewer (6/22)

[Tools] MapViewer and map page updated to display details of bin map (6/22)

[Tools] Created ‘bin’ pages with Map/LG/marker/QTL information (6/22)

[Data] Whole genome data for the cultivated hawthorn (6/22)

[Data] Whole genome data for Fragaria chiloensis (6/22)

[Outreach] April 2022 GDR Newsletter available (4/22)

[Data] Whole genome data for Rubus idaeus Anitra (4/22)

[Data] Whole genome data for Malus prunifolia Fupingqiuzi (4/22)

[Tools] Search Orthologs and Paralogs tool updated (4/22)

[Data] Whole genome data for Prunus mume Tortuosa (4/22)

[Data] Whole genome data for Rosa wichuraiana Basye's Thornless (4/22)

[Data]Whole genome data for two new Prunus persica genome (4/22)

[Data] Synteny analysis done for Malus x domestica v1.0p (3/22)

[Data] Malus x domestica v1.0 NCBI annotation  (3/22)

[Tools] Search Orthologs and Paralogs tool available (3/22)

[Tools] New filter added to Search Nearby Marker page (3/22)

[Outreach] New short video tutorial 'How to Search Marker' available (3/22)

[Data] Whole genome data for Pyrus pyrifolia Cuiguan (3/22)

[Outreach] New short video tutorial 'How to use MapViewer' available (2/22)

[Data] New whole genome data for two flowering cherry species (1/22)

[Outreach] BIMS Manual updated (1/22)

[Data] Whole genome data available for Fragaria x ananassa Royal Royce (1/22)

[Outreach] January 2022 GDR Newsletter available (1/22)

New functionality to download 5’ and/or 3’ flanking sequences from the marker MegaSearch (12/21)

[Outreach] GDR Year in Review sent out as a December monthly email (12/21)

Haplotype block page updated to display associated stock haplotypes (8/21)

Stock pages updated to display SNP Genotype data (6/21)

Enabled ‘does not contain’ operation for text filters on all search forms. Also allowed downloading search results in the tab-delimited (TSV) format in addition to the CSV format. (2/21)

Haplotype block search module updated to allow site manages to choose associated genetic maps and genomes per project (2/21)

[Outreach] Video tutorials from GDR workshop at RGC10 available (1/21)

Marker highlighting in MapViewer linking from Tripal marker pages (10/20)

Created ‘SNP Chip’ pages with Publication/Download information (7/20)

MapViewer display support for haplotype block (06/20)

New haplotype block search available (12/19)

Pyrus ussuriensis x communis Genome v1.0 available (12/19)

New GDR Cyc db constructed using the gene models from new genome assemblies available for apple, wild strawberry, peach and black raspberry (11/21/19)

GDR presented at RGC9 in Nanjing, China (06/2018)

MapViewer map visualization tool added (12/2017)