New QTL, marker, genetic map, and genotype data (4/2019)

New QTL, marker, genetic map, and genotype data has been added to GDR. It includes data from 20 publications: 11 from Pyrus, 6 from Malus and 3 from Prunus.

Pyrus

• Wang L, Li X, Wang L, Xue H, Wu J, Yin H, Zhang S. Construction of a high-density genetic linkage map in pear (Pyrus communis x Pyrus pyrifolia nakai) using SSRs and SNPs developed by SLAF-seq. Scientia Horticulturae. 2017; 218:198-204.
• Wang, L., Wang, L., Xue, H.B., Li, X.G., Li, J. Construction of SSR genetic linkage map and comparison on pears. Sci. Agric. Sinica. 2016. 49 (12), 2353–2367
• Yue XY, Liu GQ, Zong Y, Teng YW, Cai DY. Development of genic SSR markers from transcriptome sequencing of pear buds. Journal of Zhejiang University. Science. B. 2014 Apr; 15(4):303-12.
• Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.
• Yamamoto T, Terakami S, Moriya S, Hosaka F, Kurita K, Kanamori H, Katayose Y, Saito T, Nishitani C. DNA markers developed from genome sequencing analysis in Japanese pear (Pyrus pyrifolia). Acta horticulturae. 2013; (976)477-483.
• INOUE E, MATSUKI Y, ANZAI H, EVANS K. Isolation and characterization of microsatellite markers in Japanese pear (Pyrus pyrifolia Nakai). Molecular ecology notes. 2007; 7(3):445-447.
• Fernández-Fernández F, Harvey NG. James CM. Isolation and characterization of polymorphic microsatellite markers from European pear (Pyrus communis L.). Mol. Ecol. Notes. 2006. 6: 1039–1041.
• Sawamura Y, Saito T, Takada N, Yamamoto T, Kimura T, Hayashi T,, Kotobuki K. Identification of Parentage of Japanese Pear 'Housui'. Journal of the Japanese Society for Horticultural Science 2004 73(6):511-518
• Yamamoto T, Kimura T, Shoda M, Ban Y, Hayashi T, Matsuta N. Development of microsatellite markers in the Japanese pear (Pyrus pyrifolia Nakai). Molecular Ecology Notes. 2002 Mar; 2(1):14-16.
• Yamamoto T, Kimura T, Sawamura Y, Manabe T, Kotobuki K, Hayashi T, Ban Y, Matsuta N. Simple sequence repeats for genetic analysis in pear. Euphytica. 2002; 124:129-137.
• Yamamoto T, Kimura T, Shoda M, Imai T, Saito T, Sawamura Y, Kotobuki K, Hayashi T, Matsuta N. Genetic linkage maps constructed by using an interspecific cross between Japanese and European pears. TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2002 Dec; 106(1):9-18.

Malus

• Moriya S, Iwanami H, Kotoda N, Haji T, Okada K, Terakami S, Mimida N, Yamamoto T, Abe K. Aligned genetic linkage maps of apple rootstock cultivar ‘JM7’ and Malus sieboldii ‘Sanashi 63’ constructed with novel EST-SSRs. Tree genetics & genomes. 2012; 8(4):709-723.
• Celton J-M, Tustin DS, Chagne D, Gardiner SE. Construction of a dense genetic linkage map for apple rootstocks using SSRs developed from Malus ESTs and Pyrus genomic sequences. Tree Genetics and Genomes. 2009; 5(1):93-107.
• Silfverberg-Dilworth E, Matasci CL, Van de Weg WE, Van Kaauwen MPW, Walser M, Kodde LP, Soglio V, Gianfranceschi L, Durel CE, Costa F, Yamamoto T, Koller B, Gessler C Patocchi A. Microsatellite markers spanning the apple (Malus x domestica Borkh.) genome. Tree Genetics and Genomes. 2006; 2(4):202-224.
• Liebhard, R., Gianfranceschi, L., Koller, B., Ryder, C.D., Tarchini, R., Weg, E. van de., Gessler, C. Development and characterisation of 140 new microsatellites in apple (Malus x domestica Borkh.) Mol. breed. 2002. v. 10 (4) p. 217-241. 
• Hokanson SC, Szewc-McFadden AK, Lamboy WF, McFerson JR. Microsatellite (SSR) markers reveal genetic identities, genetic diversity and relationships in a Malus x domestica borkh. core subset collection. Theoretical and Applied Genetics. 1998; 97:671-683.
• Guilford P, Prakash S, Zhu JM, Rikkerink E, Gardiner S, Bassett H, Forster R. Microsatellites in Malus X domestica (apple): abundance, polymorphism and cultivar identification. Theoretical and Applied Genetics. 1997; 94(2):249-254.

Prunus

• Cai L, Quero-García J, Barreneche T, Dirlewanger E, Saski C, Iezzoni A. A fruit firmness QTL identified on linkage group 4 in sweet cherry (Prunus avium L.) is associated with domesticated and bred germplasm. Scientific reports. 2019 Mar 21; 9(1):5008.
• da Silva Linge C, Antanaviciute L, Abdelghafar A, Arús P, Bassi D, Rossini L, Ficklin S, Gasic K. High-density multi-population consensus genetic linkage map for peach. PloS one. 2018; 13(11):e0207724.
• Wiersma, P. A., Erogul, D., Ali, S. (2018). "DNA Fingerprinting of Closely Related Cultivars of Sweet Cherry." Journal of the American Society for Horticultural Science 143(4): 282-288.