Data Submission

How to contribute data to GDR

Please contact us to arrange the transfer of data to the GDR from accepted peer-reviewed work. Manuscripts accepted in scientific journals are highly encouraged to submit data to the GDR prior to publication. For example, upon GDR's partnership with Tree Genetics & Genomes since July 18, 2011, all manuscripts containing genomics, genetics, or breeding data for Rosaceae tree species, which have been accepted for publication in TGG, are required to submit data to GDR prior to manuscript publication. After dataset submission, the GDR will provide an accession number and the data will be initially available for download on the publication datasets page. The data will then be integrated with existing GDR data, with full credit given to the submitting authors. As an active member of AgBioData Consortium, we embrace the Findable, Accessible, Interoperable, and Reusable (FAIR) principles to facilitate and maximize the accessibility and reuse of large-scale data in agricultural research.

Gene Annotation Data

Please enter data in the gene annotation template and refer to Gene Naming Guideline and the list of gene class symbols in Rosaceae

Genotype, Phenotype, and/or Haplotype Data (from cultivar/breeding line evaluation projects)

We will host genotype, phenotype, and/or haplotype data from cultivar, breeding line, and accessions with primary research importance. Please provide data in appropriate templates that can be downloaded below. SNP genotype data can also be provided in vcf.

Map, QTL, and GWAS data

Please provide data in appropriate templates that can be downloaded below.Phenotype and/or genotype data of progeny populations and panels will be made available for download.

High-throughput Sequencing data

We recommend raw sequencing data to be deposited to NCBI Sequence Read Archive (SRA).

Data Templates

Below are template files for marker, genetic map, QTL, GWAS, genotype, and phenotype data. We recommend you contact us before filling in the template so that we can work closely with you to ensure this process is expedited easily and quickly. Use ORCID for contact column and DOI for reference column in every sheet.

*when there are genome position data for markers and/or QTLs, provide the data in genome_position template.

Template Marker Genetic Map QTL Map GWAS Genotype (SNP/SSR) Haplotype Phenotype
contact need need need need need need need
dataset     need need  need need need
genotype        need one of the three genotype forms or VCF need one of the three genotype forms or VCF    
genotype_snp_long_form              
genotype_snp_wide_form              
gwas       need      
gwas_group       need      
gwas_trait_data       need      
map   need need        
map_position   need need        
marker need marker or snp_marker need marker or snp_marker need marker or snp_marker need marker or snp_marker need marker or snp_marker need marker or snp_marker  
snp_marker              
mtl     need for Mendelian Trait Loci        
phenotype       need     need
qtl     need        
qtl_trait_data     need        
trait     need need     need
descriptor     need need     need
site     may need need     need
stock   need need need need need need
genome_position may need may need may need need may need    
haplotype_block           need  
haplotype           need  
haplotype_snp           need