How to contribute data to GDR
Please contact us to arrange the transfer of data to the GDR from accepted peer-reviewed work. Manuscripts accepted in scientific journals are highly encouraged to submit data to the GDR prior to publication. For example, upon GDR's partnership with Tree Genetics & Genomes since July 18, 2011, all manuscripts containing genomics, genetics, or breeding data for Rosaceae tree species, which have been accepted for publication in TGG, are required to submit data to GDR prior to manuscript publication. After dataset submission, the GDR will provide an accession number and the data will be initially available for download on the publication datasets page. The data will then be integrated with existing GDR data, with full credit given to the submitting authors. As an active member of AgBioData Consortium, we embrace the Findable, Accessible, Interoperable, and Reusable (FAIR) principles to facilitate and maximize the accessibility and reuse of large-scale data in agricultural research.
- Genome Assembly Data
- Gene Expression and Epigenetics Data
- Gene Annation Data
- Genotype/phenotype/haplotype data from breeding or cultivar evaluation projects
- Map, QTL, GWAS data
- High-throughput sequencing data
Please enter data in the gene annotation template and refer to Gene Naming Guideline and the list of gene class symbols in Rosaceae
Genotype, Phenotype, and/or Haplotype Data (from cultivar/breeding line evaluation projects)
We will host genotype, phenotype, and/or haplotype data from cultivar, breeding line, and accessions with primary research importance. Please provide data in appropriate templates that can be downloaded below. SNP genotype data can also be provided in vcf.
Please provide data in appropriate templates that can be downloaded below.Phenotype and/or genotype data of progeny populations and panels will be made available for download.
High-throughput Sequencing data
We recommend raw sequencing data to be deposited to NCBI Sequence Read Archive (SRA).
Below are template files for marker, genetic map, QTL, GWAS, genotype, and phenotype data. We recommend you contact us before filling in the template so that we can work closely with you to ensure this process is expedited easily and quickly. Use ORCID for contact column and DOI for reference column in every sheet.
*when there are genome position data for markers and/or QTLs, provide the data in genome_position template.
| Template | Marker | Genetic Map | QTL Map | GWAS | Genotype (SNP/SSR) | Haplotype | Phenotype |
|---|---|---|---|---|---|---|---|
| contact | need | need | need | need | need | need | need |
| dataset | need | need | need | need | need | ||
| genotype | need one of the three genotype forms or VCF | need one of the three genotype forms or VCF | |||||
| genotype_snp_long_form | |||||||
| genotype_snp_wide_form | |||||||
| gwas | need | ||||||
| gwas_group | need | ||||||
| gwas_trait_data | need | ||||||
| map | need | need | |||||
| map_position | need | need | |||||
| marker | need marker or snp_marker | need marker or snp_marker | need marker or snp_marker | need marker or snp_marker | need marker or snp_marker | need marker or snp_marker | |
| snp_marker | |||||||
| mtl | need for Mendelian Trait Loci | ||||||
| phenotype | need | need | |||||
| qtl | need | ||||||
| qtl_trait_data | need | ||||||
| trait | need | need | need | ||||
| descriptor | need | need | need | ||||
| site | may need | need | need | ||||
| stock | need | need | need | need | need | need | |
| genome_position | may need | may need | may need | need | may need | ||
| haplotype_block | need | ||||||
| haplotype | need | ||||||
| haplotype_snp | need |