Data Overview

 
 Genes : 3618069 genes and 4037072 mRNAs
SourceNumber of genesNumber of mRNA
Cerasus x kanzakura cv. 'Atami-zakura' Whole Genome v1.0 Assembly & Annotation6952869528
Cerasus x kanzakura cv. 'Kawazu-zakura' Whole Genome v1.0 Assembly & Annotation727020
Cerasus x yedoensis Somei-Yoshino Genome v1.0 Assembly & Annotation095076
Crataegus pinnatifida var. major Genome v1.0 Assembly & Annotation4057140571
Fragaria daltoniana YNU Genome v1.0 Assembly & Annotation2813128131
Fragaria iinumae Genome v1.0 Assembly & Annotation2354023665
Fragaria mandshurica YNU Genome v1.0 Assembly & Annotation2541125411
Fragaria nilgerrensis Genome v1.0 Assembly & Annotation2878057560
Fragaria nilgerrensis SCBG Genome v1.0 Assembly & Annotation2906829068
Fragaria nilgerrensis YNU Genome v1.0 Assembly & Annotation2449124491
Fragaria nubicola SCBG Genome v1.0 Assembly & Annotation2759427595
Fragaria pentaphylla YNU Genome v1.0 Assembly & Annotation2385323853
Fragaria vesca (CFRA 2339) Whole Genome v1.0 Assembly & Annotation3034933474
Fragaria vesca Whole Genome v1.0 (build 8) Assembly & Annotation6807368073
Fragaria vesca Whole Genome v1.1.a2 (Re-annotation of v1.1)064597
Fragaria vesca Whole Genome v4.0.a1 Assembly & Annotation2860828655
Fragaria vesca Whole Genome v4.0.a2 (Re-annotation of v4.0.a1)3400864597
Fragaria viridis SCBG Genome v1.0 Assembly & Annotation2619926199
Fragaria viridis YNU Genome v1.0 Assembly & Annotation2477924779
Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1216174108087
Fragaria x ananassa Camarosa Genome v1.0.a2 (Re-annotation of v1.0.a1)108447255492
Fragaria x ananassa Royal Royce Genome v1.0 Assembly & Annotation101793101793
GDR Gene Database499850
Gillenia trifoliata Whole Genome v1.0 Assembly & Annotation2884730259
Malus baccata Genome v1.0 Assembly & Annotation045901
Malus prunifolia Fupingqiuzi Genome v1.0 Assembly & Annotation4499756490
Malus sieversii Diploid Consensus Whole Genome v1.0 Assembly & Annotation9014790147
Malus sieversii Haploid Consensus Whole Genome v1.0 Assembly & Annotation4521045210
Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & Annotation9019390193
Malus sylvestris Haploid Consensus Whole Genome v1.0 Assembly & Annotation4519945199
Malus x domestica cv. Gala Diploid Consensus Whole Genome v1.0 Assembly & Annotation9050790507
Malus x domestica cv. Gala Haploid Consensus Whole Genome v1.0 Assembly & Annotation4535245352
Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation5274145116
Malus x domestica Genome v1.0 NCBI annotation5742360511
Malus x domestica HFTH1 Whole Genome v1.04467744677
Malus x domestica Whole Genome v1.0 Assembly & Annotation063561
Malus x domestica Whole Genome v1.0p Assembly & Annotation3029430294
NCBI Rosaceae gene and mRNA sequences5159256592
Potentilla micrantha Draft Genome v1.0 Assembly & Annotation3358533602
Prunus armeniaca cv.Stella Whole Genome v1.0 Assembly & Annotation3823740960
Prunus armeniaca Genome v1.0 Assembly & Annotation3043652096
Prunus armeniaca Longwangmao Whole Genome v1.0 Assembly & Annotation6597453542
Prunus armeniaca Marouch n14 Whole Genome v1.0 Assembly & Annotation3752140067
Prunus armeniaca Sungold Whole Genome v1.0 Assembly & Annotation3266952172
Prunus avium Big Star Genome v1.0 Assembly & Annotation2948750482
Prunus avium Tieton Genome v1.0 Assembly & Annotation3043930975
Prunus avium Tieton Genome v2.0 Assembly & Annotation3998442045
Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)436730
Prunus davidiana Whole Genome v1.0 Assembly & Annotation2240326527
Prunus davidiana Whole Genome v2.0 Assembly & Annotation2723627236
Prunus domestica Draft Genome Assembly v1.0 & Annotation v1.0.a1130866138597
Prunus dulcis Lauranne Genome v1.0232640
Prunus dulcis Nonpareil Genome v1.0 Assembly & Annotation4492344962
Prunus dulcis Texas Genome v2.02704233119
Prunus ferganensis Whole Genome v1.0 Assembly & Annotation2259227431
Prunus ferganensis Whole Genome v2.0 Assembly & Annotation2858728587
Prunus kansuensis Whole Genome v1.0 Assembly & Annotation2232926297
Prunus kansuensis Whole Genome v2.0 Assembly & Annotation2698626986
Prunus mandshurica CH264_4 Whole Genome v1.0 Assembly & Annotation3902141386
Prunus mira Whole Genome v1.0 Assembly & Annotation2228026958
Prunus mira Whole Genome v2.0 Assembly & Annotation2851928519
Prunus mume Tortuosa Genome v1.0 Assembly & Annotation029706
Prunus persica 124 Pan Genome v1.0 Assembly & Annotation2515525155
Prunus persica Chinese Cling Whole Genome v1.0 Assembly & Annotation2633526335
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)2687347089
Prunus persica Whole Genome v1.0 Assembly & Annotation2786428702
Prunus persica Zhongyoutao 14 Genome v1.0 Assembly & Annotation3018135389
Prunus salicina Sanyueli FAAS Whole Genome v1.0 Assembly & Annotation2971429714
Prunus salicina Sanyueli Whole Genome v2.0 Assembly & Annotation2444824448
Prunus salicina Zhongli No. 6 Whole Genome v1.0 Assembly & Annotation027481
Prunus sibirica CH320_5 Whole Genome v1.0 Assembly & Annotation4374146196
Prunus sibirica F106 Whole Genome v1.0 Assembly & Annotation3295953021
Prunus yedoensis var. nudiflora Genome v1.0 Assembly & Annotation4129441294
Pyrus betulifolia Genome v1.0 Assembly & Annotation5955259552
Pyrus bretschneideri ‘DangshanSuli’ Genome Assembly v1.14218046174
Pyrus communis Bartlett DH Genome v2.03744537445
Pyrus communis Genome v1.0 Draft Assembly & Annotation4521745217
Pyrus pyrifolia Cuiguan Whole Genome v1.0 Assembly & Annotation4262242622
Pyrus pyrifolia Whole Genome v1.0 Assembly & Annotation448760
Pyrus ussuriensis x communis Zhongai 1 v1.0 Whole Genome Assembly & Annotation4312043120
Rosa chinensis Old Blush homozygous genome v2.05038745469
Rosa chinensis Whole Genome v1.0 Assembly & Annotation4448139669
Rosa rugosa Whole Genome v1.0 Assembly & Annotation3970439704
Rosa wichuraiana Basye's Thornless Genome v1.0 Assembly & Annotation3267432674
Rubus argutus Hillquist Genome v1.0 Assembly & Annotation3850340397
Rubus chingii Hu Whole Genome v1.0 Assembly & Annotation3199431994
Rubus idaeus Anitra Genome v1.0 Assembly & Annotation4817696352
Rubus occidentalis Whole Genome Assembly v1.0 & Annotation v12800528005
Rubus occidentalis Whole Genome Assembly v1.1027612
Rubus occidentalis Whole Genome v3.0 Assembly & Annotation3325333286
 
 Genomes : 101 genome assemblies
Source
Cerasus x kanzakura cv. 'Atami-zakura' Whole Genome v1.0 Assembly & Annotation
Cerasus x kanzakura cv. 'Kawazu-zakura' Whole Genome v1.0 Assembly & Annotation
Cerasus x yedoensis Somei-Yoshino Genome v1.0 Assembly & Annotation
Crataegus pinnatifida var. major Genome v1.0 Assembly & Annotation
Fragaria chiloensis Genome v1.0 Assembly & Annotation
Fragaria daltoniana YNU Genome v1.0 Assembly & Annotation
Fragaria iinumae Genome v1.0 Assembly & Annotation
Fragaria mandshurica YNU Genome v1.0 Assembly & Annotation
Fragaria nilgerrensis Genome v1.0 Assembly & Annotation
Fragaria nilgerrensis SCBG Genome v1.0 Assembly & Annotation
Fragaria nilgerrensis YNU Genome v1.0 Assembly & Annotation
Fragaria nubicola SCBG Genome v1.0 Assembly & Annotation
Fragaria pentaphylla YNU Genome v1.0 Assembly & Annotation
Fragaria vesca (CFRA 2339) Whole Genome v1.0 Assembly & Annotation
Fragaria vesca Whole Genome v1.0 (build 8) Assembly & Annotation
Fragaria vesca Whole Genome v1.1.a2 (Re-annotation of v1.1)
Fragaria vesca Whole Genome v1.1 Assembly & Annotation
Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fragaria vesca Whole Genome v4.0.a1 Assembly & Annotation
Fragaria vesca Whole Genome v4.0.a2 (Re-annotation of v4.0.a1)
Fragaria vesca Whole Genome v4.0.a2 (Re-annotation of v4.0.a1, Synteny)
Fragaria vesca ‘Yellow Wonder’ Genome v1.0 Assembly & Annotation
Fragaria vesca ‘Yellow Wonder’ Genome v1.0 Assembly & Annotation
Fragaria viridis SCBG Genome v1.0 Assembly & Annotation
Fragaria viridis YNU Genome v1.0 Assembly & Annotation
Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fragaria x ananassa Camarosa Genome v1.0.a2 (Re-annotation of v1.0.a1)
Fragaria x ananassa FL15.89-25 Genome v1.0 Assembly & Annotation
Fragaria x ananassa Royal Royce Genome v1.0 Assembly & Annotation
Gillenia trifoliata Whole Genome v1.0 Assembly & Annotation
Malus baccata Genome v1.0 Assembly & Annotation
Malus prunifolia Fupingqiuzi Genome v1.0 Assembly & Annotation
Malus sieversii Diploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus sieversii Haploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus sylvestris Diploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus sylvestris Haploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus x domestica cv. Gala Diploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus x domestica cv. Gala Haploid Consensus Whole Genome v1.0 Assembly & Annotation
Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Malus x domestica Genome v1.0 NCBI annotation
Malus x domestica HFTH1 Whole Genome v1.0
Malus x domestica Whole Genome v1.0 Assembly & Annotation
Malus x domestica Whole Genome v1.0p Assembly & Annotation
Malus x domestica Whole Genome v3.0.a1 Assembly & Annotation
Potentilla micrantha Draft Genome v1.0 Assembly & Annotation
Prunus armeniaca cv.Stella Whole Genome v1.0 Assembly & Annotation
Prunus armeniaca Genome v1.0 Assembly & Annotation
Prunus armeniaca Longwangmao Whole Genome v1.0 Assembly & Annotation
Prunus armeniaca Marouch n14 Whole Genome v1.0 Assembly & Annotation
Prunus armeniaca Sungold Whole Genome v1.0 Assembly & Annotation
Prunus avium Big Star Genome v1.0 Assembly & Annotation
Prunus avium Tieton Genome v1.0 Assembly & Annotation
Prunus avium Tieton Genome v2.0 Assembly & Annotation
Prunus avium Whole Genome Assembly v1.0 & Annotation v1 (v1.0.a1)
Prunus cerasus cv. 'Montmorency' haploid Whole Genome v1.0 Assembly & Annotation
Prunus davidiana Whole Genome v1.0 Assembly & Annotation
Prunus davidiana Whole Genome v2.0 Assembly & Annotation
Prunus domestica Draft Genome Assembly v1.0 & Annotation v1.0.a1
Prunus dulcis Lauranne Genome v1.0
Prunus dulcis Nonpareil Genome v1.0 Assembly & Annotation
Prunus dulcis Texas Genome v2.0
Prunus ferganensis Whole Genome v1.0 Assembly & Annotation
Prunus ferganensis Whole Genome v2.0 Assembly & Annotation
Prunus humilis Genome v1.0 Assembly & Annotation
Prunus kansuensis Whole Genome v1.0 Assembly & Annotation
Prunus kansuensis Whole Genome v2.0 Assembly & Annotation
Prunus mandshurica CH264_4 Whole Genome v1.0 Assembly & Annotation
Prunus mira Whole Genome v1.0 Assembly & Annotation
Prunus mira Whole Genome v2.0 Assembly & Annotation
Prunus mume Tortuosa Genome v1.0 Assembly & Annotation
Prunus persica 124 Pan Genome v1.0 Assembly & Annotation
Prunus persica Chinese Cling Whole Genome v1.0 Assembly & Annotation
Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)
Prunus persica Whole Genome v1.0 Assembly & Annotation
Prunus persica Zhongyoutao 14 Genome v1.0 Assembly & Annotation
Prunus salicina Sanyueli FAAS Whole Genome v1.0 Assembly & Annotation
Prunus salicina Sanyueli Whole Genome v2.0 Assembly & Annotation
Prunus salicina Zhongli No. 6 Whole Genome v1.0 Assembly & Annotation
Prunus sibirica CH320_5 Whole Genome v1.0 Assembly & Annotation
Prunus sibirica F106 Whole Genome v1.0 Assembly & Annotation
Prunus yedoensis var. nudiflora Genome v1.0 Assembly & Annotation
Pyrus betulifolia Genome v1.0 Assembly & Annotation
Pyrus bretschneideri ‘DangshanSuli’ Genome Assembly v1.1
Pyrus communis Bartlett DH Genome v2.0
Pyrus communis Genome v1.0 Draft Assembly & Annotation
Pyrus pyrifolia Cuiguan Whole Genome v1.0 Assembly & Annotation
Pyrus pyrifolia Whole Genome v1.0 Assembly & Annotation
Pyrus ussuriensis x communis Zhongai 1 v1.0 Whole Genome Assembly & Annotation
Rosa chinensis Old Blush homozygous genome v2.0
Rosa chinensis Old Blush Illumina genome v1.0
Rosa chinensis Whole Genome v1.0 Assembly & Annotation
Rosa multiflora Draft Genome v1.0 Assembly & Annotation
Rosa rugosa Whole Genome v1.0 Assembly & Annotation
Rosa wichuraiana Basye's Thornless Genome v1.0 Assembly & Annotation
Rubus argutus Hillquist Genome v1.0 Assembly & Annotation
Rubus chingii Hu Whole Genome v1.0 Assembly & Annotation
Rubus idaeus Anitra Genome v1.0 Assembly & Annotation
Rubus occidentalis Whole Genome Assembly v1.0 & Annotation v1
Rubus occidentalis Whole Genome Assembly v1.1
Rubus occidentalis Whole Genome v3.0 Assembly & Annotation
Rubus ulmifolius Burbank Thornless Whole Genome v1.0 Assembly
 
 Germplasm : 23169 germplasm
 
 Fragaria : 2931
Germplasm TypeNumber of germplasm
breeding_research_material1904
cultivar538
wild_unimproved468
population21
 
 Malus : 8181
Germplasm TypeNumber of germplasm
breeding_research_material3204
cultivar2621
wild_unimproved2261
population95
 
 Prunus : 7956
Germplasm TypeNumber of germplasm
breeding_research_material4158
cultivar3426
wild_unimproved250
population122
 
 Pyrus : 3899
Germplasm TypeNumber of germplasm
cultivar2308
wild_unimproved974
breeding_research_material610
population7
 
 Rosa : 202
Germplasm TypeNumber of germplasm
cultivar177
population14
breeding_research_material9
wild_unimproved2
 
 Rubus : 1066
Germplasm TypeNumber of germplasm
cultivar418
wild_unimproved331
breeding_research_material309
population8
 
 Maps : 387 maps
GenusNumber of maps
Fragaria32
Malus122
Prunus196
Pyrus25
Rosa27
Rubus13
 
 Markers : 4250328 markers
 
 Fragaria : 638872
Marker TypeNumber of markers
SNP621005
Indel12044
EST-SSR4423
SSR994
DArT131
AFLP110
dCAPS51
EST marker27
SSCP26
genetic marker25
gene marker16
STS9
SCAR5
HRM5
RFLP1
 
 Malus : 2653840
Marker TypeNumber of markers
SNP2646025
HaploBlock marker3433
SSR1586
AFLP977
DArT677
RAPD359
genetic marker185
EST marker167
EST-SSR159
RFLP129
gene marker31
Isozyme29
SCAR22
PCR marker18
candidate gene marker14
RGA10
SNP/Indel7
CAPS7
SNP_TSP3
STS1
Heritable Phenotypic Marker1
 
 Prunus : 484983
Marker TypeNumber of markers
Indel156379
CAPS131687
SSR94612
SNP89841
SLAF8862
AFLP1267
EST marker680
RFLP502
gene marker301
candidate gene marker261
RAPD143
EST-SSR133
genetic marker62
Isozyme43
RAF39
ISSR37
SRAP32
SCAR24
LTR22
dCAPS19
IMA16
STS9
overgo probe5
PCR marker3
Heritable Phenotypic Marker2
SNP/Indel1
SSLP1
 
 Pyrus : 394408
Marker TypeNumber of markers
SNP290314
SSR102835
AFLP683
Indel557
IRAP8
STS5
Isozyme3
gene marker2
ISSR1
 
 Rosa : 78225
Marker TypeNumber of markers
SNP74612
AFLP2200
SSR620
CAPS234
NBS148
RAPD130
genetic marker106
RFLP52
gene marker49
RGA41
SSCP17
EST marker12
Heritable Phenotypic Marker2
SCAR2
 
 Rubus : 8741
Marker TypeNumber of markers
SNP7320
SSR577
AFLP529
candidate gene marker165
HRM115
gene marker18
EST-SSR16
genetic marker1
 
 Phenotypes : 527017 phenotypic measurements
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Fragaria bucharica524
Fragaria cascadensis27252
Fragaria chiloensis482839
Fragaria chinensis625
Fragaria corymbosa428
Fragaria daltoniana36
Fragaria gracilis24
Fragaria hybrid1280
Fragaria iinumae1253
Fragaria iturupensis328
Fragaria mandshurica24
Fragaria moschata45499
Fragaria moupinensis24
Fragaria nilgerrensis432
Fragaria nipponica528
Fragaria nubicola12
Fragaria orientalis744
Fragaria pentaphylla424
Fragaria sp.99198
Fragaria spp.1332
Fragaria tibetica36
Fragaria vesca1411770
Fragaria virginiana451428
Fragaria viridis1351
Fragaria x ananassa113141712
Fragaria x bifera720
Fragaria x bringhurstii22355
Fragaria x vescana1329
Malus angustifolia23379
Malus baccata421227
Malus brevipes4167
Malus coronaria411270
Malus doumeri11
Malus florentina4088
Malus floribunda53294
Malus fusca39709
Malus halliana39307
Malus honanensis1738
Malus hupehensis39528
Malus hybrid597821
Malus ioensis41729
Malus kansuensis23130
Malus mandshurica2376
Malus ombrophila1962
Malus orientalis21878
Malus orthocarpa1718
Malus prattii20196
Malus prunifolia41806
Malus pumila30246
Malus sargentii40457
Malus sieversii3823911
Malus sikkimensis23240
Malus spectabilis37157
Malus spp.39662
Malus sylvestris39488
Malus toringo23456
Malus toringoides21245
Malus transitoria18103
Malus trilobata11
Malus tschonoskii1719
Malus x adstringens1932
Malus x arnoldiana3992
Malus x asiatica21285
Malus x astracanica1616
Malus x atrosanguinea2340
Malus x dawsoniana4176
Malus x domestica280193408
Malus x hartwigii2090
Malus x magdeburgensis3686
Malus x micromalus37304
Malus x moerlandsii2239
Malus x platycarpa23139
Malus x purpurea42131
Malus x robusta41394
Malus x scheideckeri3258
Malus x soulardii2060
Malus x sublobata1768
Malus yunnanensis41356
Malus zhaojiaoensis1684
Malus zumi3680
Prunus americana1562
Prunus angustifolia428
Prunus argentea2880
Prunus armeniaca333318
Prunus avium4417431
Prunus bokhariensis1744
Prunus bucharica832
Prunus canescens11
Prunus cerasifera23650
Prunus cerasus3416313
Prunus consociiflora14
Prunus davidiana18270
Prunus domestica281324
Prunus dulcis485467
Prunus fasciculata410
Prunus ferganensis1982
Prunus ferganica1742
Prunus hortulana24
Prunus hybrid921110
Prunus japonica516
Prunus kansuensis718
Prunus kuramica728
Prunus maackii11
Prunus mexicana416
Prunus mira39233
Prunus mume1122
Prunus nigra36
Prunus pedunculata8186
Prunus persica6833164
Prunus petunnikowii764
Prunus rivularis818
Prunus salicina25472
Prunus simonii1636
Prunus spinosa8214
Prunus spp.761300
Prunus subcordata556
Prunus tangutica8184
Prunus tenella756
Prunus texana36
Prunus triloba728
Prunus undulata12
Prunus webbii28174
Prunus x blireiana620
Prunus x dasycarpa934
Pyrus betulifolia441144
Pyrus calleryana461832
Pyrus communis4923902
Pyrus cordata43289
Pyrus cossonii42141
Pyrus dimorphophylla41483
Pyrus elaeagrifolia48345
Pyrus fauriei45724
Pyrus gharbiana40117
Pyrus glabra1434
Pyrus hondoensis46616
Pyrus hybrid503533
Pyrus koehnei39181
Pyrus korshinskyi11
Pyrus mamorensis43166
Pyrus pashia40362
Pyrus pseudopashia1722
Pyrus pyrifolia482497
Pyrus regelii2269
Pyrus sachokiana11
Pyrus salicifolia44152
Pyrus spinosa37275
Pyrus spp.48218
Pyrus syriaca2095
Pyrus ussuriensis491303
Pyrus x bretschneideri37335
Pyrus x canescens11
Pyrus x complexa24
Pyrus x nivalis44225
Pyrus x phaeocarpa3847
Pyrus x sinkiangensis18
Pyrus x uyematsuana3650
Rubus acanthophyllos12
Rubus adenotrichos36
Rubus allegheniensis750
Rubus alumnus24
Rubus amphidasys48
Rubus anglocandicans36
Rubus apetalus12
Rubus arcticus952
Rubus argutus25122
Rubus armeniacus844
Rubus assamensis48
Rubus axillaris3064
Rubus bambusarum36
Rubus bogotensis14
Rubus briareus14
Rubus buergeri48
Rubus caesius31186
Rubus canadensis2680
Rubus canescens2246
Rubus caucasicus2864
Rubus chamaemorus114
Rubus chingii412
Rubus cissoides12
Rubus clinocephalus622
Rubus cockburnianus614
Rubus columellaris38
Rubus conothyrsoides410
Rubus corchorifolius316
Rubus coreanus1252
Rubus corylifolius36
Rubus crataegifolius25110
Rubus cyri48
Rubus deliciosus36
Rubus distractiformis36
Rubus drejeri2348
Rubus echinatus12
Rubus ellipticus412
Rubus enslenii12
Rubus erythrops410
Rubus eustephanos1238
Rubus flagellaris526
Rubus floribundus316
Rubus flosculosus2174
Rubus formosensis510
Rubus geoides26
Rubus georgicus48
Rubus glabratus310
Rubus glabricarpus12
Rubus glandithyrsos12
Rubus glandulosus36
Rubus glaucus532
Rubus grabowskii23108
Rubus hartmanii48
Rubus hawaiensis414
Rubus henryi1020
Rubus hirsutus21100
Rubus hirtus30168
Rubus hispidus48
Rubus hoffmeisterianus414
Rubus humulifolius24
Rubus hunanensis48
Rubus hybrid333258
Rubus hypargyrus48
Rubus ichangensis36
Rubus idaeus437659
Rubus ikenoensis410
Rubus illecebrosus1944
Rubus innominatus1340
Rubus insularis48
Rubus irenaeus622
Rubus irritans12
Rubus kawakamii12
Rubus kennedyanus12
Rubus laciniatus2972
Rubus lambertianus1250
Rubus lasiococcus1754
Rubus lasiostylus21116
Rubus leucodermis27216
Rubus lindebergii12
Rubus lineatus12
Rubus macilentus48
Rubus macraei12
Rubus macvaughianus414
Rubus megalococcus12
Rubus mesogaeus36
Rubus microphyllus524
Rubus minusculus48
Rubus miszczenkoi36
Rubus moluccanus38
Rubus moschus12
Rubus mulleri412
Rubus neglectus35310
Rubus neomexicanus1748
Rubus nepalensis412
Rubus nessensis12
Rubus nivalis36
Rubus niveus420
Rubus nubigenus312
Rubus nutkanus27216
Rubus occidentalis34692
Rubus odoratus2166
Rubus orarius12
Rubus palmatus522
Rubus parvifolius27286
Rubus parvus36
Rubus pectinellus414
Rubus pedatus520
Rubus pensilvanicus36
Rubus pentalobus510
Rubus phoenicolasius1348
Rubus plicatus2858
Rubus polyanthemos12
Rubus praecox24
Rubus pseudojaponicus36
Rubus pubescens410
Rubus pungens1536
Rubus pyramidalis36
Rubus rigidus1428
Rubus riograndis12
Rubus roseus36
Rubus rosifolius520
Rubus rugosus48
Rubus sachalinensis726
Rubus sanctus524
Rubus saxatilis510
Rubus schmidelioides38
Rubus separinus410
Rubus setchuenensis418
Rubus shankii2464
Rubus sieboldii12
Rubus simplex918
Rubus slesvicensis29178
Rubus spectabilis25176
Rubus spp.28226
Rubus squarrosus614
Rubus sumatranus1736
Rubus swinhoei36
Rubus taiwanicola36
Rubus tephrodes524
Rubus thibetanus48
Rubus trianthus48
Rubus tricolor36
Rubus trifidus1740
Rubus trivialis27182
Rubus tsangiorum48
Rubus tuberculatus12
Rubus ulmifolius24136
Rubus ursinus32296
Rubus urticifolius310
Rubus vermontanus12
Rubus vernus12
Rubus vestitus12
Rubus vigorosus12
Rubus wahlbergii2860
Rubus wallichianus36
Rubus x loganobaccus28122
 
 Publications : 9878 publications
 
 QTL : 4228 QTL and 126 MTL for 415 agronomic traits
 
 Fragaria 525 QTL 5 MTL for 125 traits
Trait CategoryNumber of QTLsNumber of MTLs
1-decanol content80
1-hexanol content10
1-methylbutyl butanoate content20
1-methylhexyl acetate content10
1-methyloctyl butanoate content30
1-octanol content120
1-penten-3-ol content20
1-penten-3-one content60
2,1-pentenyl furan content10
2,3-butanedioldi acetate content10
2-decenal content40
2-heptanol content10
2-heptanone content10
2-heptenal content60
2-hexen-1-ol content30
2-hexenal content10
2-hexenyl acetate content10
2-methylbutyl acetate content50
2-nonanol content30
2-nonanone content40
2-nonenal content10
2-octenal content30
2-pentanone content10
2-pentenal content30
2-pentylfuran content20
2-tridecanol content10
2-undecanol content30
3-hexenal content10
3-hexenyl acetate content10
3-methyl-2-butenyl acetate content20
3-methylbutyl acetate content100
6-methyl-5-hepten-2-one content60
acetone content20
acetophenone content40
alpha farnesene content20
alpha ionone content10
alpha pinene content10
anthocyanin content90
benzaldehyde content20
benzyl acetate content110
beta ionone content10
butyl acetate content70
butyl butanoate content80
butyl hexanoate content100
cinnamyl acetate content70
citric acid content60
day neutrality80
decanal content10
decyl acetate content90
ethanol content10
ethyl 2-hexenoate content10
ethyl acetate content10
ethyl butanoate content10
ethyl decanoate content40
ethyl dodecanoate content20
ethyl hexanoate content20
ethyl methylthioacetate content10
eugenol content50
Female fertility12
fructose content20
fruit color60
fruit diameter80
fruit diameter to length ratio50
fruit dry weight30
fruit firmness90
fruit length130
fruit number60
fruit set30
fruit skin color140
fruit weight100
gamma-decalactone content60
gamma-dodecalactone content50
glucose content50
heptanal content10
heptanol content10
hexanal content10
hexanol content20
hexyl acetate content30
hexyl butanoate content20
hexyl hexanoate content20
L-Ascorbic acid content60
limonene content10
linalool content60
male sterility12
malic acid content40
mesifurane content70
methyl 2-aminobenzoate content20
methyl 2-hexenoate content10
methyl 3-hydroxyoctanoate content10
methyl benzoate content100
methyl butanoate content20
methyl cinnamate content10
methyl decanoate content60
methyl dodecanoate content40
methyl hexanoate content60
methyl octanoate content40
methyl pentanoate content70
myrtenol content60
myrtenyl acetate content40
nerol content30
nerolidol content60
nonanal content10
nonyl acetate content40
octanal content10
octyl acetate content70
octyl butanoate content70
octyl hexanoate content90
pentyl acetate content10
perpetual flowering20
PH90
plant height40
plant width30
propyl butanoate content20
resistance to Colletotrichum acutatum50
resistance to Fusarium oxysporum f. sp. fragariae20
resistance to Gloeosporium and Colletotrichum species10
resistance to Phytophthora cactorum50
resistance to powdery mildew120
ripening time60
sucrose content20
terpineol content110
titratable acidity110
total water soluble content110
vernalization requirement01
yield trait60
 
 Malus 1614 QTL 53 MTL for 149 traits
Trait CategoryNumber of QTLsNumber of MTLs
2-methyl butyl acetate content30
3-octanol content10
allylanisol content40
alpha farnesene content50
base diameter20
base diameter increment80
basis angle of long sylleptic axillary shoots10
beta damascenone content20
bitter pit20
bloom date180
branch number20
butanol content20
butyl 2-methyl butanoate content20
butyl acetate content30
butyl butanoate content40
butyl hexanoate content10
catechin content140
chilling injury resistance20
chlorogenic acid content60
cord bending of long sylleptic axillary shoots20
cyanidin 3-O-arabinoside content50
date of budbreak20
date of green point190
dehydroascorbate content in fruit flesh30
dry matter content330
epicatechin content160
ethylene production40
flesh browning rate220
flowering date20
foliar dehydroascorbate content20
foliar glutathione concentration40
foliar L-ascorbic acid content10
foliar oxidized GSH content40
fructose content120
fruit acidity120
fruit circumference40
fruit color70
fruit crispness80
fruit crunchiness20
fruit diameter260
fruit fibrousness30
fruit firmness170
fruit firmness after storage510
fruit firmness at harvest380
fruit firmness of shaded side of the fruit100
fruit firmness of the sunny side of the fruit70
fruit graininess30
fruit hardness100
fruit height90
fruit juiciness90
fruit length160
fruit mealiness60
fruit meltiness50
fruit number10
fruit russet140
fruit shape200
fruit size130
fruit skin color31
fruit stiffness80
fruit texture2340
fruit weight290
gametophytic incompatibility01
glucose content160
growth rate40
harvest date630
harvest index90
heptanol content10
hexanol content60
hexyl acetate content40
hexyl butanoate content30
hexyl hexanoate content50
internode length120
internode number70
Iso-pentanol content20
juice browning60
juvenile phase length20
L-ascorbic acid content in fruit flesh180
leaf break80
leaf color01
length of the longest internode of long sylleptic axillary shoots20
length of the longest internode of the trunk10
loss of firmness during storage380
malic acid content30
mean internode length of long sylleptic axillary shoots10
mesocarp color01
number of axillary shoots40
number of brindles10
number of flower bunches20
number of latents buds on the trunk20
number of long shoots20
number of spurs20
O-methyl transferase activity10
p-coumaroyl quinic acid content200
pentanol content10
pentyl acetate content20
percentage of long shoots10
phenolic compound content1090
phloridzin-xyloside content10
plant height increment240
plant surface10
plant volume10
preharvest fruit drop20
procyanidin B2 content110
propyl acetate content20
propyl hexanoate content10
quercetin 3-O-arabinofuranoside content10
quercetin 3-O-glucoside content20
quercetin 3-O-rutinoside content20
quercetin 3-O-xyloside content10
resistance to Agrobacterium tumefaciens01
resistance to Botryosphaeria dothidea637
resistance to Dysaphis cf. devecta40
resistance to Dysaphis plantaginea51
resistance to Erwinia amylovora511
resistance to Penicillium expansum20
resistance to powdery mildew360
resistance to Venturia inaequalis638
ripening time20
rooting rate30
rootstock-induced dwarfing30
russet-calyx20
russet-pedicel40
seedling leaf size20
seedling stem diameter40
soft scald50
soggy breakdown40
sorbitol content130
stem diameter150
stem length50
stem node number70
stomatal conductance50
sucrose content140
sugar content70
sugar content of shaded side of the fruit70
sugar content of the sunny side of the fruit80
time of initial vegetative budbreak270
titratable acidity60
total acidity180
total growth increment60
total water soluble content130
transpiration rate60
tree growth morphology01
unbranched upper zone of trunk10
unknown procyanidin oligomer 1 content40
unknown procyanidin oligomer 2 content40
unknown procyanidin oligomer 3 content30
unknown procyanidin oligomer 4 content50
unknown procyanidin oligomer 5 content60
volatile organic compounds content530
 
 Prunus 1764 QTL 40 MTL for 163 traits
Trait CategoryNumber of QTLsNumber of MTLs
abnormal growth after insufficient stratification10
aborting fruit01
amygdalin hydrolase activity30
annual trunk net growth30
anther color01
anthocyanin content30
ATP phosphofructokinase activity50
bloom date1680
broomy growth habit11
catechin content20
catechin epicatechin ratio40
chilling injury resistance530
chilling requirement1280
citrate content70
citric acid content70
cyanidin 3-O-glucoside content20
cyanidin 3-O-rutinoside content30
date of budbreak30
days to maturity600
double flower01
ecodormancy release date40
endodormancy release date50
epicatechin content20
evergrowing01
firmness loss280
flavan-3-ol-a content20
flavan-3-ol-b content20
flavonoid content50
flesh adhesion141
flesh color around the stone71
flower color22
flowering date500
flowering time100
flower shape02
fresh weight30
fructokinase activity160
fructose-1,6-bisphosphatase activity30
fructose content350
fruit chewiness40
fruit cohesiveness40
fruit color30
fruit cracking50
Fruit depth180
fruit development period420
fruit diameter90
fruit firmness300
fruit flavor trait10
fruit flesh color120
fruit fresh weight170
fruit gumminess60
fruit hairiness01
fruit hardness80
fruit height110
fruit resilience20
fruit ripening trait40
fruit shape31
fruit size60
fruit skin color301
fruit springiness20
fruit texture70
fruit weight720
Fruit width180
gametophytic incompatibility43
germination date50
glucose content300
glucosyltransferase activity trait30
heat requirement170
heat requirement for blooming20
heat requirement for ecodormancy release40
hexokinase activity150
hybrid incompatibility01
internode length30
kernel diameter20
kernel length40
kernel spherical index10
kernel taste31
kernel thickness30
kernel weight10
kernel width20
late blooming41
leaf area20
leaf color21
leaf gland01
leaf length40
leaf shape71
leaf vein density50
leaf vein number60
leaf width50
linoleic acid content20
malate content130
male sterility01
malic acid content80
mandelonitrile lyase activity20
mesocarp color312
nematode damage resistance01
neochlorogenic acid content50
neutral invertase activity20
non-acid fruit01
nut diameter20
nut length40
nut size20
nut spherical index40
nut thickness30
nut weight20
nut width30
oleic acid content20
palmitic acid content20
palmitoleic acid content40
p-coumaric acid content20
p-coumaroyl quinic acid content20
peonidin 3-O-glucoside content30
peonidin 3-O-rutinoside content30
period of time between endodormancy and ecodormancy release20
period of time between endodormancy release and blooming50
petiole length30
PH90
phenolic compound content30
phosphoglucomutase activity70
pistil death20
plant height11
pollen germination20
polycarpel01
proanthocyanidin B1 content20
protein content20
prunasin hydrolase activity40
quinic acid content10
red skin pigmentation130
relative antioxidant capacity30
resistance to Dysaphis cf. devecta320
resistance to Meloidogyne arenaria61
resistance to Meloidogyne incognita32
resistance to Meloidogyne javanica01
resistance to Monilinia fructicola310
resistance to Myzus persicae91
resistance to peach tree short life syndrome90
resistance to plum pox virus362
resistance to powdery mildew871
resistance to Pseudomonas syringae pv. Syringae70
resistance to Xanthomonas arboricola pv. Pruni130
restistance to Candidatus Phytoplasma pruni40
ripening time681
seed set number30
seed size10
shell hardness61
sorbitol content200
sorbitol oxidase activity20
stearic acid content50
stem diameter30
stem length20
stem taper50
stratification requirement20
sucrose content330
sugar content40
titratable acidity180
tocopherol homologues content50
total acidity130
total branch number20
total fat content20
total water soluble content590
tree shape30
trunk diameter120
UDP-glucose pyrophosphorylase activity70
yield trait30
 
 Pyrus 47 QTL 3 MTL for 16 traits
Trait CategoryNumber of QTLsNumber of MTLs
fruit color40
fruit juiciness20
fruit seed number60
fruit skin texture20
fruit transverse diameter30
fruit vertical diameter30
fruit weight20
gametophytic incompatibility01
leaf color01
mesocarp color20
pedicel length30
resistance to Cacopsylla pyri110
resistance to Venturia nashicola01
russet-calyx20
scab resistance40
total water soluble content30
 
 Rosa 168 QTL 17 MTL for 31 traits
Trait CategoryNumber of QTLsNumber of MTLs
anther color01
bloom date10
chlorophyll content80
days to flowering20
double flower02
flower color02
flower size40
gametophytic incompatibility01
geranyl acetate content02
growth rate100
internode length10
internode number80
leaf area80
leaf dry weight100
leaf size50
nerol content01
neryl acetate content01
perpetual flowering01
petal number22
plant height50
presence of prickles31
prickles on the petiole01
resistance to Diplocarpon rosae01
resistance to powdery mildew511
shoot dry weight100
shoot habit60
specific leaf area80
stem angle20
stem diameter100
stem dry weight80
stem length60
 
 Rubus 110 QTL 8 MTL for 33 traits
Trait CategoryNumber of QTLsNumber of MTLs
caffeic acid glucoside content40
caffeic acid unknown content20
cane pubescence01
catechin unknown content30
chilling requirement70
cyanidin 3-O-2G-glucosylrutinoside content90
cyanidin 3-O-2G-xylosylrutinoside content30
cyanidin 3-O-2G-xylosylrutinoside & cyanidin 3-O-rutinoside content40
cyanidin 3-O-glucoside content30
cyanidin 3-O-glucoside & cyanidin 3-O-sambubioside content50
cyanidin 3-O-rutinoside content50
cyanidin 3-O-sophoroside content110
floricane fruiting01
fruit color20
fruit length10
fruit shape10
fruit size10
fruit texture130
fruit weight40
p-coumaric glucoside content60
pelargonidin 3-O-glucoside content20
pelargonidin 3-O-glucosylrutinoside content30
pelargonidin 3-O-rutinoside content60
petal color20
plant height01
presence of prickles22
quercetin 3-O-rutinoside content20
quercetin glucoside content20
quercetin glucuronide content30
quercetin unknown content40
resistance to Amphorophora agathonica01
resistance to Amphorophora idaei01
resistance to large raspberry aphid01
 
 SNP Genotype : 99014 markers 131153737 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
Prunus persica47636861429
Prunus armeniaca953515
Rosaceae Family Genera sp.5362144
Fragaria x ananassa105443085712
Malus x domestica128107305668
Prunus avium49141217952
Prunus cerasus765331632
Pyrus communis64562112325334
Pyrus x bretschneideri915656
Fragaria iinumae164695
 
 SSR Genotype : 5041 markers 69540 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
Malus x domestica400052276
Prunus armeniaca14218
Prunus avium36510168
Prunus cerasus164560
Prunus dulcis13
Prunus persica445155
Prunus salicina153
Pyrus pyrifolia227
Pyrus sp.229
Rosaceae Family Genera sp.4481051
Total504169540
 
 Species : 2305 species
GenusNumber of species
Acaena25
Adenostoma1
Agrimonia14
Alchemilla101
Amelanchier36
Amygdalus6
Aphanes4
Arabidopsis1
Aremonia1
Argentina6
Aria4
Armeniaca1
Aronia6
Aruncus3
Bencomia5
Cannabis1
Cerasus2
Cercocarpus6
Chaenomeles3
Chamaebatia1
Chamaebatiaria1
Chamaecallis1
Chamaemeles1
Chamaemespilus1
Chamaerhodos4
Cliffortia149
Coleogyne1
Coluria2
Comarum2
Cormus1
Cotoneaster71
Crataegus113
Cydonia1
Dasiphora4
Dendriopoterium2
Dichotomanthes1
Docynia2
Docyniopsis1
Dryas8
Drymocallis6
Duchesnea1
Eriobotrya12
Eriolobus1
Exochorda3
Fallopia1
Fallugia1
Filipendula3
Fragaria54
Geum29
Gillenia2
Hagenia1
Hesperomeles2
Heteromeles1
Holodiscus3
Horkelia5
Horkeliella1
Ivesia11
Kageneckia3
Kelseya1
Kerria2
Lachemilla4
Leucosidea1
Lindleya1
Luetkea1
Lyonothamnus3
Malacomeles1
Maleae1
Malus114
Marcetella2
Margyricarpus3
Mespilus2
Neillia12
Neviusia2
null1
Oemleria1
Osteomeles3
Pentactina1
Peraphyllum1
Petrophytum2
Phippsiomeles1
Photinia32
Physocarpus9
Pisum1
Polylepis24
Potaninia1
Potentilla143
Poterium2
Pourthiaea3
Prinsepia5
Prunus295
Prunus (and Cerasus)1
Pseudocydonia1
Purshia3
Pygeum8
Pyracantha5
Pyronia1
Pyrus57
Rhaphiolepis2
Rhodotypos1
Rosa225
Rosaceae2
Rosaceae Family Genera1
Rubus386
Sanguisorba15
Sarcopoterium1
Sibbaldia6
Sibbaldianthe3
Sibbaldiopsis1
Sibiraea4
Sieversia2
Solanum1
Sorbaria5
Sorbus86
Spenceria1
Spiraea55
Stranvaesia5
synthetic1
Taihangia1
Tetraglochin7
Torminalis2
Vauquelinia4
Waldsteinia1
Xerospiraea1
xPyronia1
xSorbopyrus1
 
 Transcripts
SourceNumber of features
Fragaria ananassa GDR RefTrans V174947
Fragaria Unigene v5.0contigs : 6226
singlets : 12008
Malus Unigene v5.0contigs : 25525
singlets : 60918
Malus x domestica GDR RefTrans V1482648
Prunus avium GDR RefTrans V1257186
Prunus persica GDR RefTrans V1168828
Prunus Unigene v5.0contigs : 10934
singlets : 22957
Pyrus GDR RefTrans V1.063681
Pyrus Unigene v5.0contigs : 259
singlets : 964
Rosaceae Family Unigene v5.0contigs : 33916
singlets : 166551
Rosa GDR RefTrans V1.040539
Rosa Unigene v5.0contigs : 1215
singlets : 3707
Rubus GDR RefTrans V137326
Rubus GDR RefTrans V244291
Rubus Unigene v5.0contigs : 359
singlets : 1734