Data Overview

 
 Genes : 597226 genes and 659987 mRNAs
 
 Genomes : 23 genome assemblies
 
 Germplasm : 14411 germplasm
 
 Fragaria : 1799
Germplasm TypeNumber of germplasm
breeding_research_material1714
cultivar67
population15
wild_unimproved3
 
 Malus : 4635
Germplasm TypeNumber of germplasm
breeding_research_material2341
cultivar1243
wild_unimproved969
population82
 
 Prunus : 7367
Germplasm TypeNumber of germplasm
breeding_research_material4360
cultivar2879
population107
wild_unimproved21
 
 Pyrus : 465
Germplasm TypeNumber of germplasm
cultivar311
wild_unimproved146
breeding_research_material4
population4
 
 Rosa : 145
Germplasm TypeNumber of germplasm
cultivar126
population9
breeding_research_material8
wild_unimproved2
 
 Rubus : 42
Germplasm TypeNumber of germplasm
cultivar30
population8
breeding_research_material3
wild_unimproved1
 
 Maps : 316 maps
GenusNumber of maps
Fragaria27
Malus108
Prunus171
Pyrus9
Rosa15
Rubus13
 
 Markers : 3286882 markers
 
 Fragaria : 127877
Marker TypeNumber of markers
SNP112676
Indel9528
EST-SSR4423
SSR993
AFLP103
dCAPS51
genetic marker25
EST22
SSCP20
gene marker15
STS9
EST marker5
SCAR5
RFLP1
GENE MARKER1
 
 Malus : 2613842
Marker TypeNumber of markers
SNP2606588
HaploBlock marker3433
SSR1384
AFLP811
DArT665
RAPD359
genetic marker161
EST158
RFLP129
Isozyme29
gene marker25
PCR marker15
candidate gene marker14
DART12
RGA10
HRM10
SCAR9
EST marker9
SNP/indel7
CAPS7
SNP_TSP3
EST-SSR2
STS1
heritable phenotypic marker1
 
 Prunus : 471854
Marker TypeNumber of markers
Indel151479
CAPS131687
SSR94605
SNP76749
SLAF8862
InDel4900
AFLP1238
EST677
RFLP502
gene marker301
candidate gene marker261
RAPD143
EST-SSR133
genetic marker62
RAF39
ISSR37
SRAP32
isozyme31
SCAR24
LTR22
dCAPS19
IMA16
Isozyme12
STS9
overgo probe5
PCR marker3
EST marker3
SNP/Indel1
PHENOTYPIC MARKER1
SSLP1
 
 Pyrus : 1593
Marker TypeNumber of markers
SNP1087
AFLP291
SSR198
IRAP8
STS5
Isozyme3
ISSR1
 
 Rosa : 71716
Marker TypeNumber of markers
SNP68893
AFLP1539
SSR490
CAPS234
NBS148
RAPD130
genetic marker102
RFLP53
gene marker49
RGA41
SSCP17
EST marker8
Marker4
EST4
SCAR2
heritable phenotypic marker2
 
 Rubus : 8743
Marker TypeNumber of markers
SNP7320
SSR579
AFLP529
candidate gene marker165
HRM115
gene marker18
EST-SSR16
genetic marker1
 
 Phenotypes : 389191 phenotypic measurements
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Fragaria sp.99198
Fragaria vesca99198
Fragaria x ananassa66116574
Malus domestica8910970
Malus floribunda1616
Malus sieversii1616
Malus x domestica257162731
Prunus armeniaca112119
Prunus avium4831097
Prunus canescens11
Prunus cerasus3824557
Prunus dulcis19191
Prunus maackii11
Prunus mira2123
Prunus persica4342462
Rubus idaeus637
 
 Publications : 7509 publications
 
 QTL : 3799 QTL and 103 MTL for 392 agronomic traits
 
 Fragaria 489 QTL 5 MTL for 122 traits
Trait CategoryNumber of QTLsNumber of MTLs
1-decanol content80
1-hexanol content10
1-methylbutyl butanoate content20
1-methylhexyl acetate content10
1-methyloctyl butanoate content30
1-octanol content120
1-penten-3-ol content20
1-penten-3-one content60
2,1-pentenyl furan content10
2,3-butanedioldi acetate content10
2-decenal content40
2-heptanol content10
2-heptanone content10
2-heptenal content60
2-hexen-1-ol content30
2-hexenal content10
2-hexenyl acetate content10
2-methylbutyl acetate content50
2-nonanol content30
2-nonanone content40
2-nonenal content10
2-octenal content30
2-pentanone content10
2-pentenal content30
2-pentylfuran content20
2-tridecanol content10
2-undecanol content30
3-hexenal content10
3-hexenyl acetate content10
3-methyl-2-butenyl acetate content20
3-methylbutyl acetate content100
6-methyl-5-hepten-2-one content60
acetone content20
acetophenone content40
alpha farnesene content20
alpha ionone content10
alpha pinene content10
anthocyanin content90
benzaldehyde content20
benzyl acetate content110
beta ionone content10
butyl acetate content70
butyl butanoate content80
butyl hexanoate content100
cinnamyl acetate content70
citric acid content60
day neutrality80
decanal content10
decyl acetate content90
ethanol content10
ethyl 2-hexenoate content10
ethyl acetate content10
ethyl butanoate content10
ethyl decanoate content40
ethyl dodecanoate content20
ethyl hexanoate content20
ethyl methylthioacetate content10
eugenol content50
Female fertility12
fructose content20
fruit color60
fruit diameter40
fruit diameter to length ratio50
fruit dry weight30
fruit firmness90
fruit length70
fruit number60
fruit set30
fruit skin color140
fruit weight60
gamma-decalactone content30
gamma-dodecalactone content50
glucose content50
heptanal content10
heptanol content10
hexanal content10
hexanol content20
hexyl acetate content30
hexyl butanoate content20
hexyl hexanoate content20
L-Ascorbic acid content60
limonene content10
linalool content60
male sterility12
malic acid content40
mesifurane content70
methyl 2-aminobenzoate content20
methyl 2-hexenoate content10
methyl 3-hydroxyoctanoate content10
methyl benzoate content100
methyl butanoate content20
methyl cinnamate content10
methyl decanoate content60
methyl dodecanoate content40
methyl hexanoate content60
methyl octanoate content40
methyl pentanoate content70
myrtenol content60
myrtenyl acetate content40
nerol content30
nerolidol content60
nonanal content10
nonyl acetate content40
octanal content10
octyl acetate content70
octyl butanoate content70
octyl hexanoate content90
pentyl acetate content10
perpetual flowering20
PH90
plant height40
plant width30
propyl butanoate content20
resistance to Colletotrichum acutatum50
resistance to Phytophthora cactorum50
ripening time60
sucrose content20
terpineol content110
titratable acidity110
total water soluble content70
vernalization requirement01
yield trait60
 
 Malus 1528 QTL 36 MTL for 143 traits
Trait CategoryNumber of QTLsNumber of MTLs
2-methyl butyl acetate content30
3-octanol content10
allylanisol content40
alpha farnesene content50
base diameter20
base diameter increment80
basis angle of long sylleptic axillary shoots10
beta damascenone content20
bitter pit20
bloom date180
branch number20
butanol content20
butyl 2-methyl butanoate content20
butyl acetate content30
butyl butanoate content40
butyl hexanoate content10
catechin content140
chlorogenic acid content60
cord bending of long sylleptic axillary shoots20
cyanidin 3-O-arabinoside content50
date of budbreak20
date of green point190
dehydroascorbate content in fruit flesh30
dry matter content330
epicatechin content160
ethylene production40
flesh browning20
flowering date20
foliar dehydroascorbate content20
foliar glutathione concentration40
foliar L-ascorbic acid content10
foliar oxidized GSH content40
fructose content110
fruit color70
fruit crispness80
fruit crunchiness20
fruit diameter210
fruit fibrousness30
fruit firmness170
fruit firmness after storage510
fruit firmness at harvest380
fruit firmness of shaded side of the fruit100
fruit firmness of the sunny side of the fruit70
fruit graininess30
fruit hardness100
fruit height90
fruit juiciness90
fruit length80
fruit mealiness60
fruit meltiness50
fruit number10
fruit russet140
fruit shape130
fruit size130
fruit skin color30
fruit stiffness80
fruit texture2340
fruit weight250
glucose content140
harvest date630
harvest index90
heptanol content10
hexanol content60
hexyl acetate content40
hexyl butanoate content30
hexyl hexanoate content50
internode length120
internode number70
Iso-pentanol content20
juice browning30
juvenile phase length20
L-ascorbic acid content in fruit flesh180
leaf break80
leaf color01
length of the longest internode of long sylleptic axillary shoots20
length of the longest internode of the trunk10
loss of firmness during storage380
malic acid content10
mean internode length of long sylleptic axillary shoots10
mesocarp color01
number of axillary shoots40
number of brindles10
number of flower bunches20
number of latents buds on the trunk20
number of long shoots20
number of spurs20
O-methyl transferase activity10
p-coumaroyl quinic acid content200
pentanol content10
pentyl acetate content20
percentage of long shoots10
phenolic compound content1090
phloridzin-xyloside content10
plant height growth rate40
plant height increment240
plant surface10
plant volume10
preharvest fruit drop20
procyanidin B2 content110
propyl acetate content20
propyl hexanoate content10
quercetin 3-O-arabinofuranoside content10
quercetin 3-O-glucoside content20
quercetin 3-O-rutinoside content20
quercetin 3-O-xyloside content10
resistance to Botryosphaeria dothidea621
resistance to Dysaphis cf. devecta40
resistance to Dysaphis plantaginea51
resistance to Erwinia amylovora511
resistance to Penicillium expansum20
resistance to powdery mildew360
resistance to Venturia inaequalis638
ripening time20
rootstock-induced dwarfing30
russet-calyx20
russet-pedicel40
seedling leaf size20
seedling stem diameter40
self-incompatibility01
skin_color01
sorbitol content120
stem diameter150
stem length50
stem node number70
stomatal conductance50
sucrose content130
sugar content70
sugar content of shaded side of the fruit70
sugar content of the sunny side of the fruit80
time of initial vegetative budbreak270
titratable acidity40
total acidity180
total growth increment60
total water soluble content130
transpiration rate60
tree growth morphology01
unbranched upper zone of trunk10
unknown procyanidin oligomer 1 content40
unknown procyanidin oligomer 2 content40
unknown procyanidin oligomer 3 content30
unknown procyanidin oligomer 4 content50
unknown procyanidin oligomer 5 content60
volatile organic compounds content530
 
 Prunus 1491 QTL 39 MTL for 148 traits
Trait CategoryNumber of QTLsNumber of MTLs
abnormal growth after insufficient stratification10
amygdalin hydrolase activity30
annual trunk net growth30
anther color01
anthocyanin content30
ATPphosphofructokinase activity50
bloom date1030
broomy growth habit11
chilling injury resistance440
chilling requirement1280
citrate content70
citric acid content70
date of budbreak30
days to maturity180
double flower01
ecodormancy release date40
endodormancy release date50
evergrowing01
firmness loss280
flavonoid content50
flesh adhesion141
flesh browning90
flesh color around the stone71
flower color22
flowering date500
flowering time100
flower shape02
fresh weight30
fructokinase activity160
fructose-1,6-bisphosphatase activity30
fructose content350
fruit chewiness40
fruit cohesiveness40
fruit color30
Fruit depth180
fruit development period90
fruit diameter50
fruit firmness150
fruit flavor trait10
fruit fresh weight170
fruit gumminess60
fruit hairiness01
fruit hardness80
fruit height110
fruit resilience20
fruit ripening trait40
fruit shape31
fruit skin color191
fruit springiness20
fruit texture70
fruit weight600
Fruit width180
gametophytic incompatibility03
germination date50
glucose content300
glucosyltransferase activity trait30
heat requirement170
heat requirement for blooming20
heat requirement for ecodormancy release40
hexokinase activity150
hybrid incompatibility01
internode length30
kernel diameter20
kernel length40
kernel spherical index10
kernel taste31
kernel thickness30
kernel weight10
kernel width20
late blooming41
leaf area20
leaf color21
leaf gland01
leaf length40
leaf shape71
leaf vein density50
leaf vein number60
leaf width50
linoleic acid content20
malate content130
male sterility01
malic acid content80
mandelonitrile lyase activity20
mesocarp color312
nematode damage resistance01
neutral invertase activity20
non-acid fruit01
nut diameter20
nut length40
nut size20
nut spherical index40
nut thickness30
nut weight20
nut width30
oleic acid content20
palmitic acid content20
palmitoleic acid content40
period of time between endodormancy and ecodormancy release20
period of time between endodormancy release and blooming50
petiole length30
PH90
phenolic compound content30
phosphoglucomutase activity70
pistil death20
plant height11
pollen germination20
polycarpel01
protein content20
prunasin hydrolase activity40
quinic acid content10
red skin pigmentation90
relative antioxidant capacity30
resistance to Dysaphis cf. devecta320
resistance to Meloidogyne arenaria61
resistance to Meloidogyne incognita32
resistance to Meloidogyne javanica01
resistance to Monilinia fructicola310
resistance to Myzus persicae91
resistance to peach tree short life syndrome90
resistance to plum pox virus362
resistance to powdery mildew871
resistance to Pseudomonas syringae pv. Syringae70
restistance to Candidatus Phytoplasma pruni40
ripening time631
seed set number30
seed size10
self-incompatibility40
shell hardness01
sorbitol content200
sorbitol oxidase activity20
stearic acid content50
stem diameter30
stem length20
stem taper50
stratification requirement20
sucrose content330
sugar content40
titratable acidity120
tocopherol homologues content50
total acidity90
total branch number20
total fat content20
total water soluble content500
tree shape30
trunk diameter120
UDP-glucose pyrophosphorylase activity70
Xanthomonas resistence130
yield trait30
 
 Pyrus 15 QTL 3 MTL for 5 traits
Trait CategoryNumber of QTLsNumber of MTLs
leaf color01
resistance to Cacopsylla pyri110
resistance to Venturia nashicola01
scab resistance40
self-incompatibility01
 
 Rosa 166 QTL 13 MTL for 28 traits
Trait CategoryNumber of QTLsNumber of MTLs
anther color01
chlorophyll content80
days to flowering20
double flower02
flower color02
flower size40
geranyl acetate content02
growth rate100
internode length10
internode number80
leaf area80
leaf dry weight100
leaf size50
nerol content01
neryl acetate content01
petal number10
plant height50
presence of prickles31
resistance to Diplocarpon rosae01
resistance to powdery mildew511
self-incompatibility01
shoot dry weight100
shoot habit60
specific leaf area80
stem angle20
stem diameter100
stem dry weight80
stem length60
 
 Rubus 110 QTL 7 MTL for 32 traits
Trait CategoryNumber of QTLsNumber of MTLs
caffeic acid glucoside content40
caffeic acid unknown content20
cane pubescence01
catechin unknown content30
chilling requirement70
cyanidin 3-O-2G-glucosylrutinoside content90
cyanidin 3-O-2G-xylosylrutinoside content30
cyanidin 3-O-2G-xylosylrutinoside & cyanidin 3-O-rutinoside content40
cyanidin 3-O-glucoside content30
cyanidin 3-O-glucoside & cyanidin 3-O-sambubioside content50
cyanidin 3-O-rutinoside content50
cyanidin 3-O-sophoroside content110
floricane fruiting01
fruit color20
fruit length10
fruit shape10
fruit size10
fruit texture130
fruit weight40
p-coumaric glucoside content60
pelargonidin 3-O-glucoside content20
pelargonidin 3-O-glucosylrutinoside content30
pelargonidin 3-O-rutinoside content60
petal color20
plant height01
presence of prickles22
quercetin 3-O-rutinoside content20
quercetin glucoside content20
quercetin glucuronide content30
quercetin unknown content40
resistance to Amphorophora agathonica01
resistance to large raspberry aphid01
 
 SNP Genotype : 12229 markers 10787946 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
Prunus cerasus20396123
Malus x domestica3704355584
Prunus avium1414669206
Rosaceae Family Genera sp.5362144
Prunus armeniaca953515
Prunus persica62779661374
 
 SSR Genotype : 5044 markers 18623 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
Malus x domestica400314569
Prunus armeniaca14218
Prunus avium3651219
Prunus cerasus164555
Prunus dulcis13
Prunus persica44899
Prunus salicina153
Pyrus pyrifolia227
Pyrus sp.229
Rosaceae Family Genera sp.4481051
Total504418623
 
 Species : 1967 species
GenusNumber of species
Acaena24
Adenostoma1
Agrimonia4
Alchemilla99
Amelanchier31
Amygdalus6
Aphanes4
Arabidopsis1
Aremonia1
Argentina6
Aria3
Armeniaca1
Aronia4
Aruncus2
Bencomia4
Cercocarpus2
Chaenomeles3
Chamaebatia1
Chamaebatiaria1
Chamaecallis1
Chamaemeles1
Chamaemespilus1
Chamaerhodos4
Cliffortia149
Coluria2
Comarum2
Cormus1
Cotoneaster64
Crataegus104
Cydonia1
Dasiphora4
Dendriopoterium2
Dichotomanthes1
Docynia2
Docyniopsis1
Dryas5
Drymocallis5
Duchesnea1
Eriobotrya12
Eriolobus1
Exochorda2
Fallopia1
Fallugia1
Filipendula2
Fragaria50
Geum26
Gillenia2
Hagenia1
Hesperomeles2
Heteromeles1
Holodiscus2
Horkelia5
Horkeliella1
Ivesia11
Kageneckia2
Kerria2
Lachemilla4
Leucosidea1
Lindleya1
Luetkea1
Lyonothamnus3
Malacomeles1
Maleae1
Malus111
Marcetella2
Margyricarpus3
Mespilus2
Neillia12
Neviusia1
null1
Oemleria1
Osteomeles3
Pentactina1
Peraphyllum1
Petrophytum2
Photinia28
Physocarpus7
Pisum1
Polylepis22
Potaninia1
Potentilla118
Poterium1
Prinsepia4
Prunus271
Pseudocydonia1
Purshia1
Pygeum8
Pyracantha5
Pyronia1
Pyrus42
Rhaphiolepis2
Rhodotypos1
Rosa216
Rosaceae2
Rosaceae Family Genera1
Rubus276
Sanguisorba11
Sarcopoterium1
Sibbaldia5
Sibbaldianthe2
Sibbaldiopsis1
Sibiraea4
Sieversia2
Solanum1
Sorbaria5
Sorbus40
Spenceria1
Spiraea48
Stranvaesia4
synthetic1
Taihangia1
Torminalis2
Vauquelinia2
Waldsteinia1
Xerospiraea1
 
 Transcripts
SourceNumber of features
Fragaria ananassa GDR RefTrans V174947
Fragaria Unigene v5.0singlets : 12008
contigs : 6226
Malus Unigene v5.0singlets : 60918
contigs : 25525
Malus x domestica GDR RefTrans V1482648
Prunus avium GDR RefTrans V1257186
Prunus persica GDR RefTrans V1168828
Prunus Unigene v5.0contigs : 10934
singlets : 22957
Pyrus Unigene v5.0singlets : 964
contigs : 259
Rosaceae Family Unigene v5.0contigs : 33916
singlets : 166551
Rosa Unigene v5.0singlets : 3707
contigs : 1215
Rubus GDR RefTrans V137326
Rubus GDR RefTrans V244291
Rubus Unigene v5.0contigs : 359
singlets : 1734