Data Overview

 
 Genes : 338596 genes and 377365 mRNAs
 
 Genomes : 14 genome assemblies
 
 Germplasm : 18700 germplasm
 
 Fragaria : 1972
Germplasm TypeNumber of germplasm
breeding_research_material1901
cultivar56
population13
wild_unimproved2
 
 Malus : 8481
Germplasm TypeNumber of germplasm
breeding_research_material6196
cultivar1259
wild_unimproved971
population55
 
 Prunus : 7645
Germplasm TypeNumber of germplasm
breeding_research_material4876
cultivar2664
population84
wild_unimproved21
 
 Pyrus : 460
Germplasm TypeNumber of germplasm
cultivar304
wild_unimproved146
breeding_research_material6
population4
 
 Rosa : 142
Germplasm TypeNumber of germplasm
cultivar124
population8
breeding_research_material8
wild_unimproved2
 
 Rubus : 34
Germplasm TypeNumber of germplasm
cultivar24
population6
breeding_research_material3
wild_unimproved1
 
 Maps : 224 maps
GenusNumber of maps
Fragaria13
Malus77
Prunus129
Pyrus7
Rosa14
Rubus9
 
 Markers : 3278815 markers
 
 Fragaria : 100710
Marker TypeNumber of markers
SNP90181
Indel9528
SSR712
AFLP103
EST-SSR56
dCAPS51
genetic marker27
SSCP19
gene marker15
STS10
EST marker5
GENE MARKER1
SCAR1
RFLP1
 
 Malus : 2610076
Marker TypeNumber of markers
SNP2606566
SSR1375
AFLP687
DArT665
RAPD361
genetic marker174
RFLP129
Isozyme29
gene marker23
DART12
SNP_TSP10
HRM10
SCAR9
EST marker9
SNP/indel7
CAPS7
heritable phenotypic marker1
STS1
EST-SSR1
 
 Prunus : 495002
Marker TypeNumber of markers
Indel151479
CAPS131687
SSR94206
SNP69236
IRSC candidate SNP32186
IRSC array v1 SNP9000
InDel4900
AFLP992
RFLP501
candidate gene marker261
RAPD143
EST-SSR139
genetic marker52
RAF39
ISSR37
SRAP32
SCAR24
dCAPS18
IMA16
gene marker13
Isozyme12
STS9
RFLP-SDRF7
overgo probe5
PCR marker3
EST marker3
SNP/Indel1
PHENOTYPIC MARKER1
 
 Pyrus : 1582
Marker TypeNumber of markers
SNP1087
AFLP291
SSR195
STS5
Isozyme3
ISSR1
 
 Rosa : 71445
Marker TypeNumber of markers
SNP68893
AFLP1440
SSR388
CAPS235
RAPD130
genetic marker103
NBS68
RFLP61
gene marker51
RGA41
SSCP17
EST marker8
Marker6
heritable phenotypic marker2
SCAR2
 
 Rubus : 7844
Marker TypeNumber of markers
SNP6911
AFLP529
SSR276
HRM118
EST-SSR10
 
 Phenotypes : 876889 phenotypic measurements
SpeciesNumber of trait descriptorsNumber of phenotypic measurements
Fragaria x ananassa68133270
Malus domestica8910970
Malus floribunda1616
Malus sieversii1616
Malus x domestica254610660
Prunus armeniaca111113
Prunus avium3630195
Prunus canescens11
Prunus cerasus3827858
Prunus dulcis19259
Prunus maackii11
Prunus mira2123
Prunus persica3460745
 
 Publications : 7158 publications
 
 QTL : 2802 QTL and 99 MTL for 321 agronomic traits
 
 Fragaria 361 QTL 2 MTL for 78 traits
Trait CategoryNumber of QTLsNumber of MTLs
1-decanol content50
1-methyloctyl butanoate content10
1-octanol content90
1-penten-3-one content60
2-decenal content20
2-heptanone content10
2-heptenal content40
2-hexen-1-ol content20
2-methylbutyl acetate content40
2-nonanone content30
2-octenal content20
2-pentenal content20
3-methylbutyl acetate content90
6-methyl-5-hepten-2-one content60
anthocyanin content90
benzaldehyde content10
benzyl acetate content90
butyl acetate content60
butyl butanoate content60
butyl hexanoate content70
cinnamyl acetate content50
citric acid content60
day neutrality80
decyl acetate content70
ethyl acetate content10
ethyl decanoate content20
ethyl hexanoate content10
eugenol content40
Female fertility01
fructose content20
fruit color60
fruit diameter40
fruit diameter to length ratio50
fruit dry weight30
fruit firmness90
fruit length70
fruit number60
fruit set30
fruit skin color140
fruit weight60
gamma-decalactone content30
gamma-dodecalactone content50
glucose content50
heptanal content10
heptanol content10
hexanol content20
hexyl acetate content30
hexyl hexanoate content10
L-Ascorbic acid content60
linalool content50
male sterility01
malic acid content40
mesifurane content60
methyl benzoate content60
methyl decanoate content40
methyl hexanoate content50
methyl octanoate content10
methyl pentanoate content70
myrtenol content30
myrtenyl acetate content20
nerolidol content40
nonanal content10
nonyl acetate content40
octyl acetate content60
octyl butanoate content60
octyl hexanoate content60
perpetual flowering20
PH90
plant height40
plant width30
resistance to Colletotrichum acutatum50
resistance to Phytophthora cactorum50
ripening time60
sucrose content20
terpineol content110
titratable acidity110
total water soluble content70
yield trait60
 
 Malus 1129 QTL 36 MTL for 135 traits
Trait CategoryNumber of QTLsNumber of MTLs
2-methyl butyl acetate content30
3-octanol content10
allylanisol content40
alpha farnesene content50
base diameter20
base diameter increment80
basis angle of long sylleptic axillary shoots10
beta damascenone content20
bitter pit20
bloom date180
branch number20
butanol content20
butyl 2-methyl butanoate content20
butyl acetate content20
butyl butanoate content20
catechin content60
chlorogenic acid content60
cord bending of long sylleptic axillary shoots20
cyanidin 3-O-arabinoside content50
date of budbreak20
date of green point190
dehydroascorbate content in fruit flesh30
epicatechin content80
flesh browning20
flowering date20
foliar dehydroascorbate content20
foliar glutathione concentration40
foliar L-ascorbic acid content10
foliar oxidized GSH content40
fructose content110
fruit color70
fruit crispness80
fruit crunchiness20
fruit diameter210
fruit fibrousness30
fruit firmness170
fruit firmness of shaded side of the fruit100
fruit firmness of the sunny side of the fruit70
fruit graininess30
fruit hardness100
fruit height90
fruit juiciness90
fruit length80
fruit mealiness60
fruit meltiness50
fruit number10
fruit russet140
fruit shape130
fruit size130
fruit skin color30
fruit stiffness80
fruit texture2340
fruit weight250
glucose content140
harvest date40
harvest index90
heptanol content10
hexanol content20
hexyl acetate content30
hexyl butanoate content20
hexyl hexanoate content10
internode length120
internode number70
Iso-pentanol content20
juice browning30
juvenile phase length20
L-ascorbic acid content in fruit flesh180
leaf break80
leaf color01
length of the longest internode of long sylleptic axillary shoots20
length of the longest internode of the trunk10
malic acid content10
mean internode length of long sylleptic axillary shoots10
mesocarp color01
number of axillary shoots40
number of brindles10
number of flower bunches20
number of latents buds on the trunk20
number of long shoots20
number of spurs20
O-methyl transferase activity10
p-coumaroyl quinic acid content110
pentanol content10
pentyl acetate content10
percentage of long shoots10
phloridzin-xyloside content10
plant height growth rate40
plant height increment240
plant surface10
plant volume10
preharvest fruit drop20
procyanidin B2 content40
propyl acetate content20
propyl hexanoate content10
quercetin 3-O-arabinofuranoside content10
quercetin 3-O-glucoside content20
quercetin 3-O-rutinoside content20
quercetin 3-O-xyloside content10
resistance to Botryosphaeria dothidea621
resistance to Dysaphis cf. devecta40
resistance to Dysaphis plantaginea51
resistance to Erwinia amylovora511
resistance to Penicillium expansum20
resistance to powdery mildew360
resistance to Venturia inaequalis638
ripening time20
russet-calyx20
russet-pedicel40
seedling leaf size20
seedling stem diameter40
self-incompatibility01
skin_color01
sorbitol content120
stem diameter150
stem length50
stem node number70
stomatal conductance50
sucrose content130
sugar content70
sugar content of shaded side of the fruit70
sugar content of the sunny side of the fruit80
time of initial vegetative budbreak270
titratable acidity40
total acidity180
total growth increment60
total water soluble content130
transpiration rate60
tree growth morphology01
unbranched upper zone of trunk10
unknown procyanidin oligomer 1 content40
unknown procyanidin oligomer 2 content40
unknown procyanidin oligomer 3 content30
unknown procyanidin oligomer 4 content50
unknown procyanidin oligomer 5 content60
volatile organic compounds content360
 
 Prunus 1043 QTL 39 MTL for 123 traits
Trait CategoryNumber of QTLsNumber of MTLs
abnormal growth after insufficient stratification10
amygdalin hydrolase activity30
anther color01
anthocyanin content30
bloom date790
broomy growth habit11
chilling injury resistance440
chilling requirement1050
citric acid content70
date of budbreak30
double flower01
ecodormancy release date40
endodormancy release date50
evergrowing01
flavonoid content50
flesh adhesion141
flesh browning90
flesh color around the stone71
flower color22
flowering date90
flowering time100
flower shape02
fresh weight30
fructose content190
fruit color30
fruit development period90
fruit diameter50
fruit firmness150
fruit flavor trait10
fruit hairiness01
fruit ripening trait40
fruit shape31
fruit skin color191
fruit texture70
fruit weight360
gametophytic incompatibility03
germination date50
glucose content100
glucosyltransferase activity trait30
heat requirement50
heat requirement for blooming20
heat requirement for ecodormancy release40
hybrid incompatibility01
internode length30
kernel diameter20
kernel length40
kernel spherical index10
kernel taste31
kernel thickness30
kernel weight10
kernel width20
late blooming41
leaf area20
leaf color21
leaf gland01
leaf length40
leaf shape71
leaf vein density50
leaf vein number60
leaf width50
linoleic acid content20
male sterility01
malic acid content80
mandelonitrile lyase activity20
mesocarp color312
nematode damage resistance01
non-acid fruit01
nut diameter20
nut length40
nut size20
nut spherical index40
nut thickness30
nut weight20
nut width30
oleic acid content20
palmitic acid content20
palmitoleic acid content40
period of time between endodormancy and ecodormancy release20
period of time between endodormancy release and blooming50
petiole length30
PH90
phenolic compound content30
pistil death20
plant height11
pollen germination20
polycarpel01
protein content20
prunasin hydrolase activity40
quinic acid content10
red skin pigmentation90
relative antioxidant capacity30
resistance to Dysaphis cf. devecta320
resistance to Meloidogyne arenaria61
resistance to Meloidogyne incognita32
resistance to Meloidogyne javanica01
resistance to Monilinia fructicola310
resistance to Myzus persicae91
resistance to peach tree short life syndrome90
resistance to plum pox virus362
resistance to powdery mildew661
ripening time631
seed set number30
seed size10
self-incompatibility40
shell hardness01
sorbitol content70
stearic acid content50
stem diameter30
stem length20
stem taper50
stratification requirement20
sucrose content160
sugar content40
titratable acidity120
tocopherol homologues content50
total acidity90
total branch number20
total fat content20
total water soluble content500
tree shape30
trunk diameter20
Xanthomonas resistence130
yield trait30
 
 Pyrus 11 QTL 3 MTL for 4 traits
Trait CategoryNumber of QTLsNumber of MTLs
leaf color01
resistance to Cacopsylla pyri110
resistance to Venturia nashicola01
self-incompatibility01
 
 Rosa 166 QTL 13 MTL for 28 traits
Trait CategoryNumber of QTLsNumber of MTLs
anther color01
chlorophyll content80
days to flowering20
double flower02
flower color02
flower size40
geranyl acetate content02
growth rate100
internode length10
internode number80
leaf area80
leaf dry weight100
leaf size50
nerol content01
neryl acetate content01
petal number10
plant height50
presence of prickles31
resistance to Diplocarpon rosae01
resistance to powdery mildew511
self-incompatibility01
shoot dry weight100
shoot habit60
specific leaf area80
stem angle20
stem diameter100
stem dry weight80
stem length60
 
 Rubus 92 QTL 6 MTL for 28 traits
Trait CategoryNumber of QTLsNumber of MTLs
caffeic acid glucoside content40
caffeic acid unknown content20
cane pubescence01
catechin unknown content30
chilling requirement70
cyanidin 3-O-2G-glucosylrutinoside content90
cyanidin 3-O-2G-xylosylrutinoside content30
cyanidin 3-O-2G-xylosylrutinoside & cyanidin 3-O-rutinoside content40
cyanidin 3-O-glucoside content30
cyanidin 3-O-glucoside & cyanidin 3-O-sambubioside content50
cyanidin 3-O-rutinoside content50
cyanidin 3-O-sophoroside content110
floricane fruiting01
fruit color20
fruit shape10
fruit size10
p-coumaric glucoside content60
pelargonidin 3-O-glucoside content20
pelargonidin 3-O-glucosylrutinoside content30
pelargonidin 3-O-rutinoside content60
petal color20
plant height01
presence of prickles22
quercetin 3-O-rutinoside content20
quercetin glucoside content20
quercetin glucuronide content30
quercetin unknown content40
resistance to large raspberry aphid01
 
 SNP Genotype : 12284 markers 10496544 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
Prunus persica62779680091
Rosaceae Family Genera sp.5363216
Malus x domestica3704355584
Prunus avium1767457653
 
 SSR Genotype : 5013 markers 17867 genotypic measurements
Species TypeNumber of markersNumber of genotypic measurements
Malus x domestica400314569
Prunus armeniaca14218
Prunus avium355927
Prunus cerasus163534
Prunus dulcis13
Prunus persica24456
Prunus salicina153
Pyrus pyrifolia227
Pyrus sp.229
Rosaceae Family Genera sp.4481051
Total501317867
 
 Species : 1967 species
GenusNumber of species
Acaena24
Adenostoma1
Agrimonia4
Alchemilla99
Amelanchier31
Amygdalus6
Aphanes4
Arabidopsis1
Aremonia1
Argentina6
Aria3
Armeniaca1
Aronia4
Aruncus2
Bencomia4
Cercocarpus2
Chaenomeles3
Chamaebatia1
Chamaebatiaria1
Chamaecallis1
Chamaemeles1
Chamaemespilus1
Chamaerhodos4
Cliffortia149
Coluria2
Comarum2
Cormus1
Cotoneaster64
Crataegus104
Cydonia1
Dasiphora4
Dendriopoterium2
Dichotomanthes1
Docynia2
Docyniopsis1
Dryas5
Drymocallis5
Duchesnea1
Eriobotrya12
Eriolobus1
Exochorda2
Fallopia1
Fallugia1
Filipendula2
Fragaria50
Geum26
Gillenia2
Hagenia1
Hesperomeles2
Heteromeles1
Holodiscus2
Horkelia5
Horkeliella1
Ivesia11
Kageneckia2
Kerria2
Lachemilla4
Leucosidea1
Lindleya1
Luetkea1
Lyonothamnus3
Malacomeles1
Maleae1
Malus111
Marcetella2
Margyricarpus3
Mespilus2
Neillia12
Neviusia1
null1
Oemleria1
Osteomeles3
Pentactina1
Peraphyllum1
Petrophytum2
Photinia28
Physocarpus7
Pisum1
Polylepis22
Potaninia1
Potentilla118
Poterium1
Prinsepia4
Prunus271
Pseudocydonia1
Purshia1
Pygeum8
Pyracantha5
Pyronia1
Pyrus42
Rhaphiolepis2
Rhodotypos1
Rosa216
Rosaceae2
Rosaceae Family Genera1
Rubus276
Sanguisorba11
Sarcopoterium1
Sibbaldia5
Sibbaldianthe2
Sibbaldiopsis1
Sibiraea4
Sieversia2
Solanum1
Sorbaria5
Sorbus40
Spenceria1
Spiraea48
Stranvaesia4
synthetic1
Taihangia1
Torminalis2
Vauquelinia2
Waldsteinia1
Xerospiraea1
 
 Transcripts
SourceNumber of features
Fragaria ananassa GDR RefTrans V174947
Fragaria Unigene v5.0singlets : 12008
contigs : 6226
Malus Unigene v5.0singlets : 60918
contigs : 25525
Malus x domestica GDR RefTrans V1482648
Prunus avium GDR RefTrans V1257186
Prunus persica GDR RefTrans V1168828
Prunus Unigene v5.0contigs : 10934
singlets : 22957
Pyrus Unigene v5.0singlets : 964
contigs : 259
Rosaceae Family Unigene v5.0contigs : 33916
singlets : 166551
Rosa Unigene v5.0singlets : 3707
contigs : 1215
Rubus GDR RefTrans V137326
Rubus GDR RefTrans V244291
Rubus Unigene v5.0contigs : 359
singlets : 1734