Access genome data in JBrowse and genome page

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Click on the genome names in bold to view in JBrowse2.  Also see our JBrowse2 Tutorial and Video.

Annotations of genomes within the same species (or crop) are displayed against the key genomes as tracks within JBrowse2.  For more information about the LiftOn tracks and to access the data files, go to the LiftOn Analysis pages: Fragaria | Malus | Prunus | Pyrus | Rubus | Rosa

Fragaria

  1. Fragaria chiloensis KIB CAS Genome v1.0:  JBrowse | Genome page
  2. Fragaria chiloensis v1.0: JBrowse | Genome page
  3. Fragaria daltoniana YNU Genome v1.0 : JBrowse | Genome page
  4. Fragaria iinumae KIB CAS Genome v1.0 : JBrowse | Genome page
  5. Fragaria iinumae Genome v1.0 : JBrowse | Genome page
  6. Fragaria iinumae  (FII_r1.1): JBrowse | Genome page
  7. Fragaria mandschurica YNU Genome v1.0 : JBrowse | Genome page
  8. Fragaria moupinensis haplotype Genome v1.0: JBrowse | Genome page
  9. Fragaria nilgerrensis YNU Genome v1.0 : JBrowse | Genome page
  10. Fragaria nilgerrensis SCBG Genome v1.0: JBrowse | Genome page
  11. Fragaria nilgerrensis Genome v1.0: JBrowse | Genome page
  12. Fragaria nipponica KIB CAS Genome v1.0: JBrowse | Genome page
  13. Fragaria nipponica  (FNI_r1.1): JBrowse | Genome page
  14. Fragaria nubicola  (FNU_r1.1): JBrowse | Genome page
  15. Fragaria nubicola SCBG Genome v1.0: JBrowse | Genome page
  16. Fragaria orientalis  (FOR_r1.1): JBrowse | Genome page
  17. Fragaria pentaphylla YNU Genome v1.0 : JBrowse | Genome page
  18. Fragaria viridis YNU Genome v1.0 : JBrowse | Genome page
  19. Fragaria viridis SCBG Genome v1.0: JBrowse | Genome page
  20. Fragaria virginiana KIB CAS Genome  v1.0: JBrowse | Genome page
  21. Fragaria vesca CFRA 2339 Genome v1.0: JBrowse | Genome page
  22. Fragaria vesca ‘Hawaii 4’ NAU Genome v1.0: JBrowse | Genome page
  23. Fragaria vesca Ruegen NAU Genome v1.0: JBrowse | Genome page
  24. Fragaria vesca Yellow Wonder Genome v1.0: JBrowse | Genome page
  25. Fragaria vesca Genome v4.0: JBrowse | Genome page
  26. Fragaria vesca Genome v2.0: JBrowse | Genome page
  27. Fragaria vesca Genome v1.1: JBrowse | Genome page (v1.1.a1 | v1.1.a2)
  28. Fragaria vesca Genome v1.0 scaffolds: JBrowse | Genome page
  29. Fragaria vesca Genome v1.0 pseudomolecules: JBrowse | Genome page
  30. Fragaria x ananassa Benihoppe HZAU Genome v1.0: JBrowse | Genome page
  31. Fragaria x ananassa Benihoppe Genome v1.0: JBrowse | Genome page
  32. Fragaria x ananassa Camarosa Genome v1.0: JBrowse | Genome page
  33. Fragaria x ananassa FL15.89-25 Genome v1.0: JBrowse | Genome page
  34. Fragaria x ananassa FL17.68-110 Genome v1.0:  JBrowse | Genome page
  35. Fragaria x ananassa FL20.82-27 Genome v1.0: JBrowse | Genome page
  36. Fragaria x ananassa Florida Brilliance Genome v1.0: JBrowse | Genome page
  37. Fragaria x ananassa Florida Medallion Genome v1.0: JBrowse | Genome page
  38. Fragaria x ananassa Royal Royce Genome v1.0: JBrowse | Genome page
  39. Fragaria x ananassa Yanli Genome v1.0: JBrowse | Genome page
  40. Fragaria x ananassa  (FAN_r1.1): JBrowse | Genome page
  41. Fragaria x ananassa  (FANhybrid_r1.2): JBrowse | Genome page

Malus

  1. Malus angustifolia Genome v1.0: JBrowse | Genome page
  2. Malus baccata v1.0: JBrowse | Genome page
  3. Malus coronaria v1.0: JBrowse | Genome page
  4. Malus fusca v1.1 : JBrowse | Genome page
  5. Malus ioensis v1.0: JBrowse | Genome page
  6. Malus prunifolia Fupingqiuzi v1.0 genome: JBrowse | Genome page 
  7. Malus sieversii haploid v1.0 genome: JBrowse | Genome page
  8. Malus sieversii diploid v1.0 genome: JBrowse | Genome page
  9. Malus sylvestris haploid v1.0 genome: JBrowse | Genome page
  10. Malus sylvestris diploid v1.0 genome: JBrowse | Genome page
  11. Malus x domestica Antonovka 172670-B: JBrowse | Genome page
  12. Malus x domestica Cox's Orange Pippin  BUA v1.0.a2: JBrowse | Genome page
  13. Malus x domestica 'Fuji' v1.0.a2: JBrowse | Genome page
  14. Malus x domestica Gala haploid v1.0 genome: JBrowse | Genome page
  15. Malus x domestica Gala diploid v1.0 genome: JBrowse | Genome page
  16. Malus x domestica Granny Smith BUA v1.0.a2: JBrowse | Genome page
  17. Malus x domestica 'Hanfu' v1.0: JBrowse | Genome page
  18. Malus x domestica HFTH1 v1.0: JBrowse | Genome page
  19. Malus x domestica Honeycrisp v1.1: JBrowse | Genome page
  20. Malus x domestica Jiguan BUA v1.0.a2: JBrowse | Genome page
  21. Malus x domestica 'M9' v1.0.a2: JBrowse | Genome page
  22. Malus x domestica 'MM106' v1.0.a2: JBrowse | Genome page
  23. Malus x domestica Golden Delicious FEM v1.2: JBrowse | Genome page
  24. Malus x domestica Golden Delicious GDT2T v1.0: JBrowse | Genome page
  25. Malus x domestica Genome (GDDH13 v1.1): JBrowse | Genome page
  26. Malus x domestica Golden Delicious Genome NCBI annotation: JBrowse | Genome page
  27. Malus x domestica Orin BUA Whole Genome v1.0.a2: JBrowse | Genome page
  28. Malus x domestica Ottawa Whole Genome v1.0.a1: JBrowse | Genome page
  29. Malus x domestica Red Fuji BUA v1.0.a2: JBrowse | Genome page
  30. Malus x domestica WA 38: JBrowse | Genome page
  31. Malus x domestica v1.0 NCBI annotation: JBrowse | Genome page
  32. Malus x domestica v3.0.a1 pseudomolecules: JBrowse | Genome page
  33. Malus x domestica v3.0.a1 contigs: JBrowse | Genome page
  34. Malus x domestica v1.0 pseudomolecules: JBrowse | Genome page
  35. Malus x domestica v1.0: JBrowse | Genome page
  36. Malus x domestica v1.0 primary: JBrowse | Genome page

Prunus (and Cerasus)

Pyrus

  1. Pyrus betulifolia Genome v1.0: JBrowse | Genome page
  2. Pyrus bretschneideri v1.1 genome: JBrowse | Genome page
  3. Pyrus communis d'Anjou Genome v2.3.a1: JBrowse | Genome page
  4. Pyrus communis d'Anjou draft  Genome v1.0: JBrowse | Genome page
  5. Pyrus communis Bartlett DH Genome v2.1: JBrowse | Genome page
  6. Pyrus communis Bartlett DH Genome v2.0: JBrowse | Genome page
  7. Pyrus communis v1.0 draft genome: JBrowse | Genome page
  8. Pyrus pyrifolia Cuiguan Genome v1.0: JBrowse | Genome page
  9. Pyrus pyrifolia Genome v1.0: JBrowse | Genome page
  10. Pyrus ussuriensis x communis Genome v1.0: JBrowse | Genome page

Rosa

  1. Rosa chinensis Genome v1.0: JBrowse | Genome page
  2. Rosa chinensis Illumina Genome v1.0: JBrowse | Genome page
  3. Rosa chinensis Homozygous Genome v2.0: JBrowse | Genome page
  4. Rosa multiflora Genome v1.0: JBrowse | Genome page
  5. Rosa rugosa Genome v1.0: JBrowse | Genome page
  6. Rosa wichuraiana Basye's Thornless Genome v1.0: JBrowse | Genome page

Rubus

Potentilla (or Argentina)

 

  1. Potentilla anserina v1.0: JBrowse | Genome page
  2. Potentilla micrantha v1.0: JBrowse | Genome page
  3. Argentina anserina v1.0: JBrowse | Genome page
  4. Argentina lineata v1.0: JBrowse | Genome page

Others

  1. Crataegus pinnatifida var. major Genome v1.0: JBrowse | Genome page
  2. Eriobotrya japonica Genome v1.0: JBrowse | Genome page
  3. Gillenia trifoliata Genome v1.0: JBrowse | Genome page