Fragaria vesca Whole Genome v1.0 (build 8) Assembly & Annotation

Ab Initio GeneMark Predictions
Ab initio GeneMark gene prediction were generated by Mark Borodovsky, Paul Burns and Alexandre Lomsadze (Georgia Institute of Technology, Atlanta, Georgia, USA) dated 10-12-2009. The ab initio predictions for Fragaria vesca were created using the new 2.51 version of the GeneMark-ES program¹ developed by Paul Burns. This program uses an iterative self-training algorithm to train a GMHMM gene model, which is used for gene prediction inside the iterative training as well as for the final prediction step. ^[1]Lomsadze A., Ter-Hovhannisyan V., Chernoff Y. and Borodovsky M. Gene identification in novel eukaryotic genomes by self-training algorithm. Nucleic Acids Research, 2005, Vol. 33, No. 20, 6494-6506

Hybrid GeneMark Predictions
Hybrid GeneMark gene prediction were generated by Mark Borodovsky, Paul Burns and Alexandre Lomsadze (Georgia Institute of Technology, Atlanta, Georgia, USA) with EST data constraints released 16-11-2009. The ab initio predictions for Fragaria vesca were created using the new 2.51 version of the GeneMark-ES program¹ developed by Paul Burns. This program uses an iterative self-training algorithm to train a GMHMM gene model, which is used for gene prediction inside the iterative training as well as for the final prediction step. ^[1]Lomsadze A., Ter-Hovhannisyan V., Chernoff Y. and Borodovsky M. Gene identification in novel eukaryotic genomes by self-training algorithm. Nucleic Acids Research, 2005, Vol. 33, No. 20, 6494-6506.

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