News and Events

Oxford Nanopore Crop Basecalling Models available (6/25)!
GDR workshop (RGC12) and BIMS workshop (NAPB) materials available (6/25)
QTLs aligned across genomes (6/25)
New genome assemblies for Prunus persica Lovell available (6/25)!
Malus x domestica Golden Delicious FEM v1.1 available (4/25)
Apr 2025 Newsletter available (4/25)
JBrowse2 available (4/25)!
GIGWA available for exploring genotyping data (4/2025)
New GWAS, QTL, marker, and map data are available (4/25)
GDR Monthly Email Archive (4/25)
Two Argentina (Portentilla) genomes available (4/25)
New BIMS Short Tutorial Video: How to use accession template (4/25)
Rubus L. subgenus Rubus Watson Genome (4/25)
Fragaria x ananassa Florida Brilliance Genome V1.0 available (3/25)
Fragaria x ananassa FL17.68-110 Genome v1.0 available (2/25)
Fragaria iinumae KIB CAS Genome v2.0 available (2/25)
Full analysis done for Cerasus speciosa IZO01 Genome v1.0 (2/25)
Prunus zhengheensis Genome v1.0 available (2/2025)
NSF travel award to attend RGC in Spain (1/25)
RosEXEC meeting at PAG 10 AM - 12 PM on Sunday, January 12
Come see us at PAG 32 (1/11-1/13/2025)
Prunus mume Nanko Genome available (12/24)
Three new octoploid strawberry WGS available (12/24)
Video Tutorial: Find orthologs and corresponding function (11/24)
Oct 2024 Newsletter available (10/23)
New GWAS, QTL, marker, and map data are available (10/24)
Genomes with aligned QTLs displayed in MapViewer (9/24)
New GWAS, QTL, marker, map and phenotype data are available (9/24)
GDR activities at ASHS (9/24)
Genome for Malus coronaria and Malus ioensis available (9/24)
New JBrowse tracks for QTLs, GWAS, and markers for Rosa, Rubus, and Pyrus genomes (8/24)
New PathwayCyc available for almond and pear (8/24)
New JBrowse tracks for QTLs, GWAS, and markers (7/24)
Genome for Fragaria x ananassa Florida Brilliance available (7/24)
Genome data for Fragaria x ananassa FL 16.33-8 available (7/24)
New TE data in Rosaceae available in JBrowse and download (7/24)
Malus x domestica Golden Delicious GDT2T Genome available (7/24)
Join us at BIMS workshop at NAPB 2024! (7/24)
New GWAS, QTL, map, and marker data available (6/24)
Cerasus speciosa IZO01 Genome available (6/24)
Golden Delicious haplotype-resolved genome available (6/24)
Genome data for Fragaria x ananassa FL 20.82-27 available (5/24)
Genome data for Prunus dulcis Texas Genome v3.0 available (5/24)
RGC 12 to be held on May 6-9th, 2025 at Costa Brava, Spain
Genome/gene naming guideline updated following AgBioData recommendation (4/24)
Whole genome data for Malus x domestica WA 38 available (4/24)
New GWAS, QTL, phenotype, and genotype data available (4/24)
New Cyc available for two apple genomes (4/24)
Stadardized Rosaceae Trait Terms Updated (3/24)
New Prunus GWAS data available (3/24)
New Video Tutorial: Learn how to download markers from a map region! (3/24)
Whole genome data for Prunus cerasus Montmorency v1.0.a2 (3/24)
BIMS: more permission levels are available (3/24)
Three apple genomes, Fuji and two rootstocks, M9 and MM106, available (3/24)
Prunus armeniaca Yinxiangbai v1.0 available (2/24)
Summary of the first RosEXEC available in the GDR newsletter (2/24)
New Video Tutorial: Learn how to find trait associated markers! (2/24)
Image data management available in BIMS (1/24)!
New GWAS, QTL, phenotype, and genotype data available (1/24)
Haplotype data for Fragaria x ananassa Yanli Genome v1.0 (1/24)
Fragaria moupinensis haplotype Genome v1.0 available (1/24)
GDR activities at PAG 31 (1/24)
Fragaria x ananassa Benihoppe Genome v1.0 available (12/23)
Prunus avium Regina Genome v1.0 available (12/23)
Malus x domestica Antonovka 172670-B Genome v1.0 available (11/23)
Malus angustifolia Genome v1.0 available (11/23)
Pyrus communis d'Anjou Genome v2.3.a1 available (11/23)
Malus x domestica Golden Delicious Genome NCBI annotation available (11/23)
October 2023 newsletter available (10/23)
Rubus 13K SNP array and KASP assay data available (10/23)
RosEXEC October quarterly meeting minutes available (10/23)
Whole genome data for Prunus davidiana ZXST Haplotype Genome available (10/23)
Whole genome data for Prunus campanulata available (10/23)
New expression datasets available to view in heatmap (9/23)
New Video Tutorial: Learn how to create an expression heatmap and view data! (9/23)
Strawberry Pangenome constructed from six diploid Fragaria species are available (9/23)
New rose QTL, marker, and map data available (9/23)
Join us for GDR activities at the ASHS 2023 Conference (7/23)
July 2023 newsletter available (7/23)
New rose QTL, marker, and map data available (7/23)
Whole genome data for two red raspberry genomes available (7/23)
Check out updated video tutorial page (7/23)!
Whole genome data for Fragaria vesca ‘Hawaii 4’ available (7/23)
Whole genome data for Malus x domestica 'Hanfu' available (7/23)
Whole genome data for Prunus mongolica available (7/23)
Whole genome data for three Fragaria genomes available (6/23)
GWAS data template available! (5/23)
Whole genome data for Prunus salicina Lindl cv. Wushancuili (5/23)
New SNP array, QTL, marker, map, and haplotype data available (4/23)
Synteny between Gillenia and other key apple and pear genomes available (4/23)
Ortholog page added to gene/mRNA page (3/23)
New Video Tutorial: Learn how to view genomes linked to genetic maps! (3/23)
New Video Tutorial:Learn how to search markers (2/23)
Whole genome data for Malus fusca (4/23)
Join Us at RGC11!
RosEXEC January Meeting Minutes available (2/23)
January 2023 GDR Newsletter available (1/23)
New GWAS, QTL, marker, map, and genotype data available (1/23)
Whole genome data for Potentilla anserina (1/23)
Whole genome data for Eriobotrya japonica (1/23)
Whole genome data for Prunus cerasus cv. 'Montmorency' (1/23)
Whole genome data for Prunus fruticosa 27e12(2) (1/23)
Whole genome data for Fragaria x ananassa Yanli Genome v1.0 (1/23)
RosEXEC in-person at PAG 30, Jan. 15, 2023 (1/23)
Join us at PAG 30 (1/23)
New Cyc available for apple genome v1.0 NCBI annotation (12/22)
New video tutorial: Overlaying Omics Data in PathwayCyc (11/22)
Methylation tracks for strawberry mutants available in JBrowse (12/22)
October 2022 GDR Newsletter available (10/22)
Whole genome data for Pyrus communis d'Anjou (10/22)
Ortholog Search Powered by MegaSearch (10/22)
MegaSearch: user selected downloading enabled (10/22)
New video tutorial: BLAST to mRNA details to JBrowse (9/22)
Whole genome data for Malus x domestica Honeycrisp (9/22)
Whole genome data for Fragaria x ananassa Florida Brilliance (9/22)
Whole genome data for Rubus idaeus Joan J Genome v2.0 (9/22)
Whole genome data for Fragaria x ananassa FL15.89-25 (9/22)
Whole genome data for Prunus dulcis Nonpareil (9/22)
Whole genome data for Prunus humilis (9/22)
New short video tutorial - How to use MegaSearch for Genetic Maps (8/22)
New search pages available for Trait and Trait Descriptor (8/22)
GDR presentations at ASHS, ASPB, ISHS, and PAG 2022 (8/22)
July 2022 GDR Newsletter available (7/22)
Whole genome data for Rubus argutus Hillquist (7/22)
New short video tutorial 'How to use MegaSearch for QTL'! (6/22)
Whole genome data for Fragaria vesca Yellow Wonder (6/22)
Whole genome data for Fragaria x ananassa FL15.89-25 (6/22)
New short video tutorial 'How to use the BLAST tool! (5/22)
Check out new corresponding matrices in MapViewer (6/22)
MapViewer and map page updated to display details of bin map (6/22)
Whole genome data for the cultivated hawthorn (6/22)
Whole genome data for Fragaria chiloensis (6/22)
April 2022 GDR Newsletter available (4/22)
Whole genome data for Rubus idaeus Anitra (4/22)
Whole genome data for Malus prunifolia Fupingqiuzi (4/22)
Search Orthologs and Paralogs tool updated (4/22)
Whole genome data for Prunus mume Tortuosa (4/22)
Whole genome data for Rosa wichuraiana Basye's Thornless (4/22)
Whole genome data for two new Prunus persica genome (4/22)
Retrieve corresponding genes across multiple apple assemblies (4/22)
Search Orthologs and Paralogs tool available (3/22)
New filter added to Search Nearby Marker page (3/22)
New short video tutorial 'How to Search Marker' (3/22)
Whole genome data for Pyrus pyrifolia Cuiguan (3/22)
Whole genome data for Prunus avium Big Star (3/22)
New QTL, marker, map, and haplotype data available (2/22)
January 2022 GDR Newsletter available (1/22)
Whole genome data for two flowering cherry species (1/22)
BIMS Manual updated (1/22)
Whole genome data available for Fragaria x ananassa Royal Royce (1/22)
Whole genome data available for four wild relatives of peach (12/21)
New whole genome data for five strawberry species (11/21)
Rosa rugosa Whole Genome available (9/21)
New apple SNP genotype data available (9/21)
Rubus chingii Hu Whole Genome available (8/21)
Retrieval of sequence around SNP and genes available (8/21)
Six apple whole genome data available (8/21)
Prunus salicina Sanyueli FAAS Whole Genome data available (7/21)
Fragaria vesca (CFRA 2339) Whole Genome data available (7/21)
Genes linked to gene family trees in PhyloGenes (6/21)
New QTL and haplotype data available for peach (6/21)
GDR Gene Database Updated (6/21)
Four apricot whole genome data are available (6/21)
Genome for Gillenia trifoliata available (5/21)
Genomes for two apricot cultivars and one wild species added (4/21)
IRSC 1K SNP for pear searchable (4/21)
Protein sequences available for predicted genes from whole genome assemblies (3/21)
Updated DNA Testing Handbook for Strawberry available (3/21)
Dynamic Rosaceae Trait Ontology page available (2/21)
New 50K SNP array for apple, QTL data and haplotype data (2/21)
New apple SSR genotype data from NLGRP USDA available (2/21)
Video tutorials from GDR workshop at RGC10 available (1/21)
Pyrus pyrifolia Genome v1.0 available (1/21)
Prunus persica Chinese Cling Genome v1.0 available (1/21)
Chinese plum genome data (P. salicina Sanyueli) v2.0 available (12/20)
Prunus avium Tieton Genome v2.0 available (12/20)
GDR workshop at RGC10 at 7PM GMT+1, 10AM PST, 1 PM EST Dec 17th
Forests Webinar on December 3, 2020
Positions of IRSC 9K SNP in the GDDH13 v1.1 available (10/20)
Virtual RGC10 on December 9-11 & 16-18
F. nilgerrensis, F. nubicola, and F. viridis whole genome data available (10/20)
SNP genotype data for apple, peach and sweet cherry from RosBREED available (10/20)
Pyrus NCGR collection SNP genotyping data available (10/20)
New QTL, marker and genetic map data (9/20)
Chinese plum genome data (P. salicina Sanyueli) available (9/20)
Chinese plum genome data (P. salicina Zhongli No.6) available (8/20)
Genome data of four wild relatives of peach available (8/20)
Cherry 6+9K SNP array data available (8/20)
3K informative SNP for peach SeqSNP assay available (7/20)
Fragaria nilgerrensis Genome v1.0 available (7/20)
Prunus avium Tieton Genome v1.0 available (7/20)
The 7th International Horticulture Research Conference, Online, July 1-30, 2020
Pyrus Axiom 70K SNP array data available (5/20)
New QTL, marker and genetic map data (4/20)
Updated functionality available in SNP marker search (3/20)
Strawberry 850K/50K SNP array data available (3/20)
New Cyc available for cultivated strawberry (2/20)
Two special issues in Agronomy on dormancy and domestication (1/20)
GDR and Mainlab Bioinformatics Activities at PAG 2020 (1/20)
Reference transcriptome available for Pyrus genus (12/19)
New haplotype block search available (12/19)
Pyrus ussuriensis x communis Genome v1.0 available (12/19)
Prunus armeniaca Genome v1.0 available (12/19)
New Cyc available for apple, strawberry, peach, black raspberry (11/19)
New QTL, marker and genetic map data (11/19)
Fragaria iinumae Genome v1.0 available (11/19)
Pyrus betulifolia Genome v1.0 available (9/19)
Strawberry Genomics Workshop to be held at PAG XXVIII, Jan 2020
Malus baccata Genome v1.0 available (9/19)
Cerasus x yedoensis Somei-Yoshino Genome v1.0 available (8/25)
New search tool 'MegaSearch' available (7/19)
RGC10 on Mar 31 - Apr 3, 2020 Barcelona, Spain
Prunus dulcis Lauranne Genome v1.0 available (7/19)
New members elected to RosEXEC 2019 (5/19)
Pyrus communis Bartlett DH Genome v2.0 available (5/19)
Strawberry DNA Testing Handbook available (5/19)
New QTL, marker and genetic map data from 12 publications (5/19)
New annotation Fragaria vesca v4.0.a2 available (5/19)
Voting now open for RosEXEC 2019 membership (5/19)
Access markers aligned to P. persica v2.0 in search/JBrowse (4/19)
Alignments of F. x ananassa 90K SNP to F. x ananassa genome (4/19)
Malus x domestica HFTH1 Whole Genome v1.0 available (4/2019)
New QTL, marker, genetic map, and genotype data (4/2019)
Transcriptome data of Rubus idaeus ¨Heritage¨ fruit available (4/2019)
BIMS training at RosBREED participants meeting (3/19)
Fragaria x ananassa Camarosa Genome v1.0 available (1/2019)
Pyrus bretschneideri ‘DangshanSuli’ Genome v1.1 available (1/2019)
Prunus domestica Draft Genome Assembly v1.0 available (1/2019)
Reference transcriptome available for Rosa genus (1/19)
GDR and Mainlab Bioinformatics Activities at PAG 2019 (1/19)
Easy access page for genome data (12/2018)
GDR manuscript published in NAR (10/2018)
TE Detection by RepetDB available (10/2018)
Prunus dulcis Texas Whole Genome v2.0 available (10/2018)
Prunus yedoensis Whole Genome v1.0 available (10/2018)
Gene/transcript search page updated (9/2018)
JBrowse for Malus x domestica v1.0 pseudomolecule (9/2018)
New QTL, marker, genetic map, and genotype data (8/2018)
Rubus occidentalis Whole Genome v3.0 available (7/2018)
Rosa chinensis Old Blush homozygous genome v2.0 available (7/2018)
RGC9 on June 26-30, 2018 Nanjing, China
Rosaceae genome synteny analysis and new viewer available (6/2018)
Potentilla micrantha v1.0 draft genome available (6/2018)
Rubus occidentalis whole genome v3.0 assembly available (5/2018)
BIMS Webinar May 2018 (5/2018)
Enhanced SNP genotype search page available (5/2018)
BIMS Webinar April 2018 (4/2018)
JBrowse plugin multivariant viewer implemented (4/2018)
All genome data available from JBrowse (4/2018)
Rosa multiflora genome v1.0 assembly & annotation added (3/2018)
New QTL, markers, genetic map and genotype data (3/2018)
Rosa chinensis v1.0 genome assembly & annotation available (3/2018)
BIMS training workshop for rosaceae breeders (3/2018)
F. vesca v4.0.a1 genome assembly & annotation available (1/2018)
Output customization added to gene/sequence search (1/2018)
Rubus occidentalis genome assembly v1.1 available (1/2018)
GDR and Mainlab Bioinformatics Activities at PAG 2018 (12/17)
RosBREED cherry genotype and phenotype data updated (12/19/17)
New QTL, markers, genetic map and genotype data (12/19/17)
New trait evaluation search available (12/11/17)
Mapping between NCBI annotated gene and genes from the original genome assembly available (11/28/17)
RosEXEC 2018 election now open (11/27/17)
New annotation Fragaria vesca v2.0.a2 available (10/26/17)
Malus x domestica genome sequence/annotation (GDDH13 v1.1) and the GDR annotation available (10/2/17)
Prunus persica v2.0.a1 genome assembly/annotation (3/18/17) and genetic map data available (9/29/17)
New QTL, markers and genetic map data available (9/29/17)
Pathway Inspector from FEM available in GDR (8/31/17)
Reference transcriptomes available for BLAST search (8/7/17)
Malus x domestica GDDH13 v1.1 genome available in JBrowse and Blast (7/27/17)
New enhanced BLAST interface on GDR (7/25/17)
Prunus avium v1.0.a1 genome and annotation available (7/19/17)
Hold the date for RGC9 in Nanjing, China, June 26-30, 2018 (4/26/17)
New QTL, markers and genetic map data available (4/14/17)
SNP genotype search page available (2/10/17)
Reference transcriptome available for Malus x domestica, Prunus avium and Prunus persica (2/10/17)
GDR at PAG 2017: Fruit/Nut; GDR workshop; Computer Demo; RosEXEC/RosIGI; Click for more information
Search by trait available in marker search (12/20/16)
SNP marker search available (12/12/16)
RubusCyc available (11/16/2016)
New QTL, markers and genetic map data available (10/31/16)
Vote now for new RosEXEC members (10/17/16)
Rosaceae Trait Ontology available (09/14/16)
Newly designed GDR launched (8/01/16)
Rubus RNASeq reference transcriptome available (8/01/16)
Germplasm image search available (8/01/16)
View synteny between apple, peach, strawberry and pear (7/25/16)
GDRCyc databases updated with MetaCyc v19.5 (4/14/16)
GDR Newsletter April 2016 available (04/13/16)
NCBI SRA RNASeq and GBS data summary pages available (04/12/16)
Black raspberry genome sequence and annotation available (04/01/16)
New QTL, markers and genetic map data available (3/31/16)
Species summary information contributed by community members available (3/31/16)
8th International Rosaceae Genomics Conference (RGC8) on June 21-24, 2016 in Angers, France
Announcements archive