New QTL, markers and genetic map data available (4/14/17)

New QTL, markers, genetic map and genotype data have been added to GDR. It includes data from 17 publications: 10 from Prunus, 6 from Malus, and 1 from Pyrus.

Prunus

• Lambert P, Campoy JA, Pacheco I, Mauroux JB, Linge CDS, Micheletti D, Bassi D, Rossini L, Dirlewanger E, Pascal T, Troggio M, Aranzana MJ, Patocchi A, Arús P. Identifying SNP markers tightly associated with six major genes in peach [Prunus persica (L.) Batsch] using a high-density SNP array with an objective of marker-assisted selection (MAS). Tree Genetics & Genomes (2016) 12: 121.
• Guajardo V, Solís S, Sagredo B, Gainza F, Muñoz C, Gasic K, Hinrichsen P. Construction of high density sweet cherry (Prunus avium L.) linkage maps using microsatellite markers and SNPs detected by genotyping-by-sequencing (GBS). PLoS ONE 2015.
• Donoso JM, Eduardo I, Picañol R, Batlle I, Howad W, Aranzana MJ, Arús P. High-density mapping suggests cytoplasmic male sterility with two restorer genes in almond × peach progenies. Horticulture Research 2015 2: 15016
• Pacheco I, Bassi D, Eduardo I, Ciacciulli A, Pirona R, Rossini L, Vecchietti A. QTL mapping for brown rot (Monilinia fructigena) resistance in an intraspecific peach (Prunus persica L. Batsch) F1 progeny. Tree genetics & genomes. 2014; 10(5):1223-1242.
• Blaker KM, Chaparro JX, Beckman TG. Identification of QTLs controlling seed dormancy in peach (Prunus persica). Tree genetics & genomes. 2013; 9(3):659-668.
• Martínez-García PJ, Parfitt DE, Ogundiwin EA, Fass J, Chan HM, Ahmad R, Lurie S, Dandekar A, Gradziel TM, Crisosto CH. High density SNP mapping and QTL analysis for fruit quality characteristics in peach (Prunus persica L.). Tree genetics & genomes. 2013; 9(1):19-36.
• Sajer O, Scorza R, Dardick C, Zhebentyayeva T, Abbott AG, Horn R. Development of sequence-tagged site markers linked to the pillar growth type in peach (Prunus persica). 2012. Plant Breed. 131: 186-192
• Peace C, Bassil N, Main D, Ficklin S, Rosyara UR, Stegmeir T, Sebolt A, Gilmore B, Lawley C, Mockler TC, Bryant DW, Wilhelm L, Iezzoni A. Development and evaluation of a genome-wide 6K SNP array for diploid sweet cherry and tetraploid sour cherry. PloS one. 2012; 7(12):e48305.
• Soriano JM, Domingo ML, Zuriaga E, Romero C, Zhebentyayeva T, Abbott AG, Badenes ML. Identification of simple sequence repeat markers tightly linked to plum pox virus resistancein apricot. Molecular breeding. 2012; 30(2):1017-1026.
• Narrowing down the apricot Plum pox virus resistance locus and comparative analysis with the peach genome syntenic region. 2011. MOLECULAR PLANT PATHOLOGY. 12(6): 535–547

Malus

• Luigi Falginella, Guido Cipriani, Corinne Monte, Roberto Gregori, Raffaele Testolin, Riccardo Velasco, Michela Troggio, Stefano Tartarini. A major QTL controlling apple skin russeting maps on the linkage group 12 of ‘Renetta Grigia di Torriana’. BMC Plant Biology. 2015; 15:150.
• Yuansheng Chang, Rui Sun, Huanhuan Sun, Yongbo Zhao, Yuepeng Han, Dongmei Chen, Yi Wang, Xinzhong Zhang, Zhenhai Han. Mapping of quantitative trait loci corroborates independent genetic control of apple size and shape. Scientia Horticulturae. 2014; 174:126–132.
• Troggio M, Surbanovski N, Bianco L, Moretto M, Giongo L, Banchi E, Viola R, Fernández FF, Costa F, Velasco R, Cestaro A, Sargent DJ. Evaluation of SNP Data from the Malus Infinium Array Identifies Challenges for Genetic Analysis of Complex Genomes of Polyploid Origin. PloS one. 2013; 8(6):e67407.
• Yauk YK, Chagné D, Tomes S, Matich AJ, Wang MY, Chen X, Maddumage R, Hunt MB, Rowan DD, Atkinson RG. The O-methyltransferase MdoOMT1 is required for biosynthesis of methylated phenylpropenes in ripe apple fruit. The Plant journal : for cell and molecular biology. 2015 Apr 22.
• Fernández-Fernández F, Antanaviciute L, van Dyk MM, Tobutt KR, Evans KM, Rees DJG, Dunwell JM, Sargent DJ. A genetic linkage map of an apple rootstock progeny anchored to the Malus genome sequence. Tree genetics & genomes. 2012; 8(5):991-1002.
• Fernández-Fernández F, Antanaviciute L, van Dyk MM, Tobutt KR, Evans KM, Rees DJG, Dunwell JM, Sargent DJ. A genetic linkage map of an apple rootstock progeny anchored to the Malus genome sequence. Tree genetics & genomes. 2012; 8(5):991-1002.
• Peil A, Hanke M, Flachowsky H, Garcia-Libreros T, Horner M, Bus V, Richter K, Celton J, Gardiner S. Confirmation of the fire blight QTL of Malus x robusta 5 on linkage group 3. Acta horticulturae. 2008; (793)297-303.

Pyrus

• Perchepied L, Guérif P, Ravon E, Denancé C, Laurens F, Robert P, Bouvier L, Lespinasse Y, Durel CE. Polygenic inheritance of resistance to Cacopsylla pyri in a Pyrus communis × P. ussuriensis progeny is explained by three QTLs involving an epistatic interaction. Tree Genetics & Genomes. 2016 12: 108.