New QTL, marker, genetic map, and genotype data (8/2018)

New QTL, marker, genetic map, and genotype data has been added to GDR. It includes data from 22 publications: 7 from Prunus, 7 from Malus, 6 from Fragaria, 1 from Pyrus, and 1 from Rubus.

Prunus

• Sargent DJ, Cipriani G, Vilanova S, Gil-Ariza D, Arús P, Simpson DW, Tobutt KR, Monfort A. The development of a bin mapping population and the selective mapping of 103 markers in the diploid Fragaria reference map. Genome. 2008 Feb; 51(2):120-127.
• Salazar JA, Rubio M, Ruiz D, Tartarini S, Martínez-Gómez P, Dondini L. SNP development for genetic diversity analysis in apricot. Tree Genetics & Genomes. 2015; 11(15).
• Salazar JA, Batnini M-A, Trifi-Farah N, Ruiz D, Martinez-Gomez P, Rubio M. Quantitative trait loci (QTLs) identification and the transmission of resistance to powdery mildew in apricot. Euphytica. 2016; 211(2):245-254.
• Kulshrestha S, Hallan V, Sharma A, Seth CA, Chauhan A, Zaidi AA. Molecular characterization and intermolecular interaction of coat protein of Prunus necrotic ringspot virus: implications for virus assembly. Indian journal of virology. 2013 Sep; 24(2):235-241.
• Serra O, Giné-Bordonaba J, Eduardo I, Bonany J, Echeverria G, Larrigaudière C, Arús P. Genetic analysis of the slow-melting flesh character in peach.Tree Genetics & Genomes (2017) 13: 77.
• Clarke JB, Sargent DJ, Bošković RI, Belaj A, Tobutt KR. A cherry map from the inter-specific cross Prunus avium ‘Napoleon’ x P. nipponica based on microsatellite, gene-specific and isoenzyme markers. Tree Genetics & Genomes. 2009; 5(1):41-51.
• Goonetilleke SN, March TJ, Wirthensohn MG, Arús P, Walker AR, Mather DE. Genotyping-by-Sequencing in Almond: SNP Discovery, Linkage Mapping and Marker Design. G3. 2017 Nov 15; 8(1):161-172.

Malus

• Vogt J, Schiller D, Ulrich D, Schwab W, Dunemann F. Identification of lipoxygenase (LOX) genes putatively involved in fruit flavour formation in apple (Malus × domestica). Tree genetics & genomes. 2013; 9(6):1493-1511.
• Chagne D, Dayatilake D, Diack R, Oliver M, Ireland H, Watson A, Gardiner SE, Johnston JW, Schaffer RJ, Tustin S. Genetic and environmental control of fruit maturation, dry matter and firmness in apple (Malus x domestica Borkh.). Horticulture Research. 2014; 1:14046.
• Harrison N, Harrison RJ, Barber-Perez N, Cascant-Lopez E, Cobo-Medina M, Lipska M, Conde-Ruíz R, Brain P, Gregory PJ, Fernández-Fernández F. A new three-locus model for rootstock-induced dwarfing in apple revealed by genetic mapping of root bark percentage. Journal of experimental botany. 2016 Jan 29; 67(6):1871-1881.
• Costa F, Cappellin L, Farneti B, Tadiello A, Romano A, Soukoulis C, Sansavini S, Velasco R, Biasioli F. Advances in QTL mapping for ethylene production in apple (Malus x domestica Borkh.). Postharvest Biology and Technology. 2014; 87:126-132.
• Verdu CF, Guyot S, Childebrand N, Bahut M, Celton J-M, Gaillard S, Lasserre-Zuber P, Troggio M, Guilet D, Laurens F. QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple. PLoS ONE. 2014; 9(10):e107103.
• Micheletti D, Troggio M, Zharkikh A, Costa F, Malnoy M, Velasco R, Salvi S. Genetic diversity of the genus Malus and implications for linkage mapping with SNPs. Tree Genetics & Genomes. 2011; 7(4):857-868.
• Di Pierro EA, Gianfranceschi L, Di Guardo M, Koehorst-van Putten HJ, Kruisselbrink JW, Longhi S, Troggio M, Bianco L, Muranty H, Pagliarani G, Tartarini S, Letschka T, Lozano Luis L, Garkava-Gustavsson L, Micheletti D, Bink MC, Voorrips RE, Aziz E, Velasco R, Laurens F, van de Weg WE. A high-density, multi-parental SNP genetic map on apple validates a new mapping approach for outcrossing species. Horticulture Research. 2016; 3:16057.

Fragaria

• Isobe SN, Hirakawa H, Sato S, Maeda F, Ishikawa M, Mori T, Yamamoto Y, Shirasawa K, Kimura M, Fukami M, Hashizume F, Tsuji T, Sasamoto S, Kato M, Nanri K, Tsuruoka H, Minami C, Takahashi C, Wada T, Ono A, Kawashima K, Nakazaki N, Kishida Y, Kohara M, Nakayama S, Yamada M, Fujishiro T, Watanabe A, Tabata S. Construction of an integrated high density simple sequence repeat linkage map in cultivated strawberry (Fragaria × ananassa) and its applicability. DNA research : an international journal for rapid publication of reports on genes and genomes. 2013 Feb; 20(1):79-92.
• Sánchez-Sevilla JF, Horvath A, Botella MA, Gaston A, Folta K, Kilian A, Denoyes B, Amaya I. Diversity Arrays Technology (DArT) Marker Platforms for Diversity Analysis and Linkage Mapping in a Complex Crop, the Octoploid Cultivated Strawberry (Fragaria × ananassa). PloS one. 2015; 10(12):e0144960.           
• Wei N, Govindarajulu R, Tennessen JA, Liston A, Ashman TL. Genetic mapping and phylogenetic analysis reveal intraspecific variation in sex chromosomes of the Virginian strawberry. The Journal of Heredity. 2017 Sep 27; 108(7):731-739.
• Urrutia M, Rambla JL, Alexiou KG, Granell A, Monfort A. Genetic analysis of the wild strawberry (Fragaria vesca) volatile composition. Plant physiology and biochemistry. 2017 Oct 25; 121:99-117.
• Nagano S, Shirasawa K, Hirakawa H, Maeda F, Ishikawa M, Isobe SN. Discrimination of candidate subgenome-specific loci by linkage map construction with an S1 population of octoploid strawberry (Fragaria × ananassa). BMC Genomics. 2017; 18(374).
• Spigler RB, Lewers KS, Main DS, Ashman TL. Genetic mapping of sex determination in a wild strawberry, Fragaria virginiana, reveals earliest form of sex chromosome. Heredity. 2008 Dec; 101(6):507-517.

Pyrus

• Perchepied L, Leforestier D, Ravon E, Guérif P, Denancé C, Tellier M, Terakami S, Yamamoto T, Chevalier M, Lespinasse Y, Durel CE. Genetic mapping and pyramiding of two new pear scab resistance QTLs. Molecular Breeding. 2015; 35(197).

Rubus

• Simpson CG, Cullen DW, Hackett CA, Smith K, Hallett PD, McNicol J, Woodhead M, Graham J. Mapping and expression of genes associated with raspberry fruit ripening and softening. Theoretical and Applied Genetics. 2017; 130(3):557-572.