New QTL, marker, map, and haplotype data available (2/22)

New marker, map, QTL and haplotype data available for apple, apricot, plum,  pear, rose, strawberry and sweet cherry (2/22)

Publications

• Apple

  • Chagné D, Vanderzande S, Kirk C, Profitt N, Weskett R, Gardiner SE, Peace CP, Volz RK, Bassil NV. Validation of SNP markers for fruit quality and disease resistance loci in apple (Malus x domestica Borkh.) using the OpenArray platform. Horticulture research. 2019; 6:30.

• Apricot

  • Juan Alfonso Salazar, David Ruiz, José Antonio Campoy, Stefano Tartarini, Luca Dondini, Pedro Martínez-Gómez. Inheritance of reproductive phenology traits and related QTL identification in apricot. Tree Genetics & Genomes. 2016; 12(71).

• Plum

  • Battistoni B, Salazar J, Vega W, Valderrama-Soto D, Jiménez-Muñoz P, Sepúlveda-González A, Ahumada S, Cho I, Gardana C, Morales H, Peña Á, Silva H, Maldonado J, González M, Infante R and Pacheco I (2022) An Upgraded, Highly Saturated Linkage Map of the Japanese Plum (Prunus salicina Lindl.), and the Identification of a New Major Locus Controlling the Flavan-3-ol Composition in Fruits. Front. Plant Sci. 13:805744. doi: 10.3389/fpls.2022.805744

• Pear

  • Xue H, Zhang P, Shi T, Yang J, Wang L, Wang S, Su Y, Zhang H, Qiao Y, Li X. Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear. BMC genomics. 2018 Jun 18; 19(1):473.

• Rose

  • Yan M, Byrne DH, Klein PE, Yang J, Dong Q, Anderson N. Genotyping-by-sequencing application on diploid rose and a resulting high-density SNP-based consensus map. Horticulture Research. 2018; 5:17.

• Strawberry

  • Pincot DDA, Poorten TJ, Hardigan MA, Harshman JM, Acharya CB, Cole GS, Gordon TR, Stueven M, Edger PP, Knapp SJ. Genome-Wide Association Mapping Uncovers Fw1, a Dominant Gene Conferring Resistance to Fusarium Wilt in Strawberry. G3 (Bethesda). 2018 Mar 30; 8(5):1817-1828.

  • Natarajan S, Hossain MR, Kim HT, Denison MIJ, Ferdous MJ, Jung HJ, Park JI, Nou IS. ddRAD-seq derived genome-wide SNPs, high density linkage map and QTLs for fruit quality traits in strawberry (Fragaria x ananassa).. 3 Biotech. 2020 Aug; 10(8):353.

• Sweet Cherry

  • Crump WW, Peace C, Zhang Z, McCord P. Detection of breeding-relevant fruit cracking and fruit firmness QTLs in sweet cherry via pedigree-based and genome-wide association approaches. 2022. Accepted to frontiers in Plant Sciences.

  • Cai L, Voorrips R, vandeWeg E, Peace C, Iezzoni A. Genetic structure of a QTL hotspot on chromosome 2 in sweet cherry indicates positive selection for favorable haplotypes. Mol Breeding. 2017; 37:85.

  • Klagges C, Campoy JA, Quero-García J, Guzmán A, Mansur L, Gratacós E, Silva H, Rosyara UR, Iezzoni A, Meisel LA, Dirlewanger E. Construction and comparative analyses of highly dense linkage maps of two sweet cherry intra-specific progenies of commercial cultivars. PloS one. 2013; 8(1):e54743.

QTL Search

Haplotype Block Search (choose Sweet_Cherry-Cai-Haplotype-2017 under Dataset)

View QTLs and haplotype blocks in MapViewer