Fragaria x ananassa 'Florida Brilliance' Genome v1.0 Assembly & Annotation
Overview
Publication Han, H., Salinas, N., Barbey, C. R., Jang, Y. J., Fan, Z., Verma, S., Whitaker, V. M., & Lee, S. (2025). A telomere-to-telomere phased genome of an octoploid strawberry reveals a receptor kinase conferring anthracnose resistance. GigaScience. GigaScience, Volume 14, 2025, giaf005, https://doi.org/10.1093/gigascience/giaf005 The data set is made available under the CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. Abstract Background Results Conclusions Table 1: Statistics of the ‘Florida Brilliance’ genome assembly and annotation
Homology
Homology of the Fragaria x ananassa Florida Brilliance genome v1.0 proteins was determined by pairwise sequence comparison using the blastp algorithm against various protein databases. An expectation value cutoff less than 1e-6 for the Arabidoposis proteins (Araport11, 2022-09), UniProtKB/SwissProt (Release 2025-02), and UniProtKB/TrEMBL (Release 2025-02) databases. The best hit reports are available for download in Excel format. Protein Homologs
Assembly
The Fragaria x ananassa Florida Brilliance v1.0 assembly files files are available in GFF3 and FASTA formats. From each of the 28 parental pairs of octoploid strawberry chromosomes we selected the most contiguous pseudomolecule from the corresponding phase-1/phase-2 parents sets to produce an optimal haploid genome assembly labelled ‘FaFB1’. Downloads
Gene Predictions
The Fragaria x ananassa Florida Brilliance v1.0 genome gene prediction files are available in GFF3 and FASTA formats. Downloads
Functional Analysis
Functional annotation for the Fragaria x ananassa Florida Brilliance genome v1.0 are available for download below. The Fragaria x ananassa Florida Brilliance genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS). Downloads
Transcript Alignments
Transcript alignments were performed by the GDR Team of Main Bioinformatics Lab at WSU. The alignment tool 'BLAT' was used to map transcripts to the Fragaria x ananassa Florida Brilliance genome v1.0 assembly. Alignments with an alignment length of 97% and 97% identify were preserved. The available files are in GFF3.
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