Rosa multiflora Draft Genome v1.0 Assembly & Annotation

Overview
Analysis NameRosa multiflora Draft Genome v1.0 Assembly & Annotation
MethodSOAPdenovo (rev240)
SourceRosa multiflora Draft Genome v1.0 Assembly & Annotation
Date performed2018-03-02

Publication

 

Genome annotation facts and statistics

The draft genome sequence of a wild rose (Rosa multiflora Thunb.) was determined using Illumina MiSeq and HiSeq platforms. The total length of the scaffolds was 739,637,845 bp, consisting of 83,189 scaffolds, which was close to the 711 Mbp length estimated by k-mer analysis. N50 length of the scaffolds was 90,830 bp, and extent of the longest was 1,133,259 bp. The average GC content of the scaffolds was 38.9%. After gene prediction, 67,380 candidates exhibiting sequence homology to known genes and domains were extracted, which included complete and partial gene structures. This large number of genes for a diploid plant may reflect heterogeneity of the genome originating from self-incompatibility in R. multiflora. According to CEGMA analysis, 91.9% and 98.0% of the core eukaryotic genes were completely and partially conserved in the scaffolds, respectively. Genes presumably involved in flower color, scent and flowering are assigned.  The results of this study will serve as a valuable resource for fundamental and applied research in the rose, including breeding and phylogenetic study of cultivated roses.

Assembly

Downloads

Pseudomolecule (FASTA file) Rosa multiflora v1.fasta.gz

 

Gene Predictions

Downloads

mRNA sequences (FASTA file) Rosa_multiflora_v1.0_CDs.fasta.gz
Peptide sequences (FASTA file) Rosa_multiflora_v1.0_pep.fasta.gz
Gene models (GFF3 file) Rosa_multiflora_v1.0_gene_models.gff3.gz
Predicted CDs sequences (FASTA file) Rosa_multiflora_v1.0_BRAKER1_CDs.fasta.gz
Predicted peptide sequences (FASTA file) Rosa_multiflora_v1.0_BRAKER1_pep.fasta.gz
Predicted Gene models (GFF3 file) Rosa_multiflora_v1.0_BRAKER1_gene_models.gff3.gz

 

Downloads

All annotation files are available for download by selecting the desired data type in the left-hand "Resources" side bar.  Each data type page will provide a description of the available files and links do download.  Alternatively, you can use the FTP repository for bulk download.